RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 NSRP1Q9H0G5 558 aaKnown RBP16.14■□□□□ 0.18
CSPG4P12-202ENST00000559989 SERPINA10Q9UK55 444 aa16.14■□□□□ 0.18
CSPG4P12-202ENST00000559989 TRAK1Q9UPV9 953 aa16.14■□□□□ 0.18
CSPG4P12-202ENST00000559989 ZSCAN25Q6NSZ9 544 aa16.14■□□□□ 0.17
CSPG4P12-202ENST00000559989 TNNT1P13805 278 aa16.14■□□□□ 0.17
CSPG4P12-202ENST00000559989 SMARCC1Q92922 1105 aaPredicted RBP16.14■□□□□ 0.17
CSPG4P12-202ENST00000559989 LRRC45Q96CN5 670 aa16.14■□□□□ 0.17
CSPG4P12-202ENST00000559989 RAB3GAP2Q9H2M9 1393 aa16.14■□□□□ 0.17
CSPG4P12-202ENST00000559989 AIMP1Q12904 312 aaKnown RBP16.13■□□□□ 0.17
CSPG4P12-202ENST00000559989 IKBKGQ9Y6K9 419 aa16.13■□□□□ 0.17
CSPG4P12-202ENST00000559989 CEP112Q8N8E3 955 aa16.13■□□□□ 0.17
CSPG4P12-202ENST00000559989 MRPS9P82933 396 aaKnown RBP16.13■□□□□ 0.17
CSPG4P12-202ENST00000559989 KIF4BQ2VIQ3 1234 aa16.13■□□□□ 0.17
CSPG4P12-202ENST00000559989 PSMD1Q99460 953 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 MYO15BQ96JP2 1530 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 LARP1BQ659C4 914 aaKnown RBP16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 CARMIL2Q6F5E8 1435 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 PSME1Q06323 249 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 STK3Q13188 491 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 ALS2CR12Q96Q35 445 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 MXRA7P84157 204 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 PRDM10Q9NQV6 1147 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 WASHC2CQ9Y4E1 1318 aa16.12■□□□□ 0.17
CSPG4P12-202ENST00000559989 A0A1W2PRG0 241 aa16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 GNAI3P08754 354 aa16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 DRC1Q96MC2 740 aa16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 CNNM1Q9NRU3 951 aa16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 HSF2BPO75031 334 aa16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 NUTM2DQ5VT03 806 aaPredicted RBP16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 NUP133Q8WUM0 1156 aa16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 SFPQP23246 707 aaKnown RBP eCLIP16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 HLTFQ14527 1009 aaKnown RBP eCLIP16.11■□□□□ 0.17
CSPG4P12-202ENST00000559989 SLU7O95391 586 aaKnown RBP16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 MAP3K11Q16584 847 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 CCDC30Q5VVM6 783 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 CEP83Q9Y592 693 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 TPD52P55327 224 aaPredicted RBP16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 ANKS4BQ8N8V4 417 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 APAF1O14727 1248 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 LMAN1P49257 510 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 CCDC155Q8N6L0 562 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 MKRN1Q9UHC7 482 aaKnown RBP16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 K7ELQ4 463 aaPredicted RBP16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 MAP7D1Q3KQU3 841 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 APBB1IPQ7Z5R6 666 aaPredicted RBP16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 PIBF1Q8WXW3 757 aa16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.1■□□□□ 0.17
CSPG4P12-202ENST00000559989 MSL1Q68DK7 614 aa16.09■□□□□ 0.17
CSPG4P12-202ENST00000559989 SPDYE4A6NLX3 237 aa16.09■□□□□ 0.17
CSPG4P12-202ENST00000559989 CEP135Q66GS9 1140 aa16.09■□□□□ 0.17
CSPG4P12-202ENST00000559989 URI1O94763 535 aaPredicted RBP16.09■□□□□ 0.17
CSPG4P12-202ENST00000559989 MAATS1Q7Z4T9 603 aa16.09■□□□□ 0.17
CSPG4P12-202ENST00000559989 CPSF2Q9P2I0 782 aaKnown RBP16.09■□□□□ 0.17
CSPG4P12-202ENST00000559989 CCDC144AA2RUR9 1427 aa16.08■□□□□ 0.17
CSPG4P12-202ENST00000559989 RAPGEF4Q8WZA2 1011 aa16.08■□□□□ 0.17
CSPG4P12-202ENST00000559989 IVLP07476 585 aa16.08■□□□□ 0.17
CSPG4P12-202ENST00000559989 ESPNB1AK53 854 aa16.08■□□□□ 0.16
CSPG4P12-202ENST00000559989 GTF2F1P35269 517 aaKnown RBP eCLIP16.08■□□□□ 0.16
CSPG4P12-202ENST00000559989 TMEM87AQ8NBN3 555 aa16.08■□□□□ 0.16
CSPG4P12-202ENST00000559989 SWAP70Q9UH65 585 aa16.08■□□□□ 0.16
CSPG4P12-202ENST00000559989 ZFYP08048 801 aaPredicted RBP16.08■□□□□ 0.16
CSPG4P12-202ENST00000559989 FEZ2Q9UHY8 353 aaPredicted RBP16.08■□□□□ 0.16
CSPG4P12-202ENST00000559989 FAM184BQ9ULE4 1060 aa16.08■□□□□ 0.16
CSPG4P12-202ENST00000559989 EFCAB2Q5VUJ9 269 aa16.07■□□□□ 0.16
CSPG4P12-202ENST00000559989 SURF6O75683 361 aaKnown RBP16.07■□□□□ 0.16
CSPG4P12-202ENST00000559989 PSMC4P43686 418 aa16.07■□□□□ 0.16
CSPG4P12-202ENST00000559989 RPUSD2Q8IZ73 545 aaKnown RBP16.07■□□□□ 0.16
CSPG4P12-202ENST00000559989 MACROD2A1Z1Q3 448 aa16.07■□□□□ 0.16
CSPG4P12-202ENST00000559989 TOP1P11387 765 aaKnown RBP16.07■□□□□ 0.16
CSPG4P12-202ENST00000559989 GCC1Q96CN9 775 aa16.07■□□□□ 0.16
CSPG4P12-202ENST00000559989 CKAP4Q07065 602 aaKnown RBP16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 RRBP1Q9P2E9 1410 aaKnown RBP16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 ZSCAN31Q96LW9 406 aaPredicted RBP16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 KIF4AO95239 1232 aa16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 CEP120Q8N960 986 aa16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 NUP88Q99567 741 aaPredicted RBP16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 DYNC1I1O14576 645 aa16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 MIA2Q96PC5 1412 aa16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 IFI16Q16666 785 aaKnown RBP16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 ZSCAN30Q86W11 494 aa16.06■□□□□ 0.16
CSPG4P12-202ENST00000559989 UBAC1Q9BSL1 405 aa16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 VGFO15240 615 aaPredicted RBP16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 GNAI2P04899 355 aa16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 CFAP58Q5T655 872 aa16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 SMC6Q96SB8 1091 aa16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 STMN4Q9H169 189 aaPredicted RBP16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 ANO10Q9NW15 660 aa16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 SEC63Q9UGP8 760 aaKnown RBP16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 MPNDQ8N594 471 aa16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 SCLT1Q96NL6 688 aa16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 RBM5P52756 815 aaKnown RBP eCLIP16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 YEATS4O95619 227 aa16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 IRX3P78415 501 aaPredicted RBP16.05■□□□□ 0.16
CSPG4P12-202ENST00000559989 GOLGA6L9A6NEM1 432 aa16.04■□□□□ 0.16
CSPG4P12-202ENST00000559989 MIPOL1Q8TD10 442 aa16.04■□□□□ 0.16
CSPG4P12-202ENST00000559989 IQCGQ9H095 443 aaKnown RBP16.04■□□□□ 0.16
CSPG4P12-202ENST00000559989 PPP6R1Q9UPN7 881 aa16.04■□□□□ 0.16
CSPG4P12-202ENST00000559989 CETN1Q12798 172 aa16.04■□□□□ 0.16
CSPG4P12-202ENST00000559989 CTNNA3Q9UI47 895 aa16.04■□□□□ 0.16
CSPG4P12-202ENST00000559989 ODF2LQ9ULJ1 636 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms