RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 DIEXFQ68CQ4 756 aaKnown RBP29.03■■■□□ 2.24
SNX1-206ENST00000559389 HMOX1P09601 288 aa29.02■■■□□ 2.24
SNX1-206ENST00000559389 KRT27Q7Z3Y8 459 aa29.02■■■□□ 2.24
SNX1-206ENST00000559389 EXOC5O00471 708 aa29■■■□□ 2.23
SNX1-206ENST00000559389 U2AF1L5P0DN76 240 aaPredicted RBP28.99■■■□□ 2.23
SNX1-206ENST00000559389 U2AF1Q01081 240 aaKnown RBP eCLIP28.99■■■□□ 2.23
SNX1-206ENST00000559389 PDE3BQ13370 1112 aa28.98■■■□□ 2.23
SNX1-206ENST00000559389 CCDC184Q52MB2 194 aa28.97■■■□□ 2.23
SNX1-206ENST00000559389 ZCRB1Q8TBF4 217 aaKnown RBP28.97■■■□□ 2.23
SNX1-206ENST00000559389 RSPH6AQ9H0K4 717 aa28.96■■■□□ 2.23
SNX1-206ENST00000559389 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.96■■■□□ 2.235e-7■□□□□ 9.9
SNX1-206ENST00000559389 MARCH10Q8NA82 808 aaPredicted RBP28.95■■■□□ 2.22
SNX1-206ENST00000559389 PCDH11XQ9BZA7 1347 aa28.94■■■□□ 2.22
SNX1-206ENST00000559389 PCDH11YQ9BZA8 1340 aa28.94■■■□□ 2.22
SNX1-206ENST00000559389 BCL9O00512 1426 aa28.94■■■□□ 2.22
SNX1-206ENST00000559389 SPG7Q9UQ90 795 aa28.93■■■□□ 2.22
SNX1-206ENST00000559389 FCHSD2O94868 740 aa28.91■■■□□ 2.22
SNX1-206ENST00000559389 PRKAR2BP31323 418 aa28.91■■■□□ 2.22
SNX1-206ENST00000559389 FAM182BQ5T319 152 aa28.91■■■□□ 2.22
SNX1-206ENST00000559389 MRS2Q9HD23 443 aa28.91■■■□□ 2.22
SNX1-206ENST00000559389 AMOTQ4VCS5 1084 aa28.9■■■□□ 2.22
SNX1-206ENST00000559389 DOT1LQ8TEK3 1739 aa28.89■■■□□ 2.22
SNX1-206ENST00000559389 CYP27B1O15528 508 aa28.89■■■□□ 2.22
SNX1-206ENST00000559389 WDR43Q15061 677 aaKnown RBP eCLIP28.89■■■□□ 2.22
SNX1-206ENST00000559389 PLEKHO1Q53GL0 409 aaPredicted RBP28.89■■■□□ 2.22
SNX1-206ENST00000559389 DDX54Q8TDD1 881 aaKnown RBP28.89■■■□□ 2.22
SNX1-206ENST00000559389 SBF2Q86WG5 1849 aa28.88■■■□□ 2.21
SNX1-206ENST00000559389 NHSQ6T4R5 1651 aa28.87■■■□□ 2.21
SNX1-206ENST00000559389 TOGARAM1Q9Y4F4 1720 aa28.87■■■□□ 2.21
SNX1-206ENST00000559389 FAM196AQ6ZSG2 479 aa28.86■■■□□ 2.21
SNX1-206ENST00000559389 ZNF530Q6P9A1 599 aaPredicted RBP28.85■■■□□ 2.21
SNX1-206ENST00000559389 TNS1Q9HBL0 1735 aaKnown RBP28.84■■■□□ 2.21
SNX1-206ENST00000559389 PHKG2P15735 406 aa28.84■■■□□ 2.21
SNX1-206ENST00000559389 PLEKHF1Q96S99 279 aa28.84■■■□□ 2.21
SNX1-206ENST00000559389 PHACTR3Q96KR7 559 aa28.83■■■□□ 2.21
SNX1-206ENST00000559389 MTHFSDQ2M296 383 aaKnown RBP28.82■■■□□ 2.2
SNX1-206ENST00000559389 IFNL2Q8IZJ0 200 aa28.82■■■□□ 2.2
SNX1-206ENST00000559389 PNISRQ8TF01 805 aaKnown RBP28.82■■■□□ 2.2
SNX1-206ENST00000559389 ADAMTS8Q9UP79 889 aa28.82■■■□□ 2.2
SNX1-206ENST00000559389 ADAMTS7Q9UKP4 1686 aa28.82■■■□□ 2.2
SNX1-206ENST00000559389 CCER2I3L3R5 266 aa28.81■■■□□ 2.2
SNX1-206ENST00000559389 NKX1-1Q15270 411 aaPredicted RBP28.81■■■□□ 2.2
SNX1-206ENST00000559389 PNNQ9H307 717 aaKnown RBP28.81■■■□□ 2.2
SNX1-206ENST00000559389 MIER1Q8N108 512 aa28.8■■■□□ 2.2
SNX1-206ENST00000559389 GAS2L2Q8NHY3 880 aa28.8■■■□□ 2.2
SNX1-206ENST00000559389 KDM6AO15550 1401 aaPredicted RBP28.79■■■□□ 2.2
SNX1-206ENST00000559389 SCN11AQ9UI33 1791 aa28.78■■■□□ 2.2
SNX1-206ENST00000559389 C1orf141Q5JVX7 400 aa28.78■■■□□ 2.2
SNX1-206ENST00000559389 MAPK8IP3Q9UPT6 1336 aa28.77■■■□□ 2.2
SNX1-206ENST00000559389 AKAP4Q5JQC9 854 aa28.77■■■□□ 2.2
SNX1-206ENST00000559389 MAP3K5Q99683 1374 aa28.76■■■□□ 2.2
SNX1-206ENST00000559389 VIRMAQ69YN4 1812 aaKnown RBP28.76■■■□□ 2.19
SNX1-206ENST00000559389 NEFMP07197 916 aa28.76■■■□□ 2.19
SNX1-206ENST00000559389 HSP90AB1P08238 724 aaKnown RBP28.76■■■□□ 2.19
SNX1-206ENST00000559389 DLG5Q8TDM6 1919 aa28.75■■■□□ 2.19
SNX1-206ENST00000559389 ITGB4P16144 1822 aa28.74■■■□□ 2.19
SNX1-206ENST00000559389 MRC1P22897 1456 aa28.74■■■□□ 2.19
SNX1-206ENST00000559389 CCDC146Q8IYE0 955 aa28.74■■■□□ 2.19
SNX1-206ENST00000559389 BTAF1O14981 1849 aa28.73■■■□□ 2.19
SNX1-206ENST00000559389 RUNDC1Q96C34 613 aa28.73■■■□□ 2.19
SNX1-206ENST00000559389 ACSBG1Q96GR2 724 aa28.73■■■□□ 2.19
SNX1-206ENST00000559389 DCAF5Q96JK2 942 aa28.73■■■□□ 2.19
SNX1-206ENST00000559389 TRIM37O94972 964 aa28.72■■■□□ 2.19
SNX1-206ENST00000559389 UPF1Q92900 1129 aaKnown RBP eCLIP28.71■■■□□ 2.19
SNX1-206ENST00000559389 EP400Q96L91 3159 aa28.7■■■□□ 2.19
SNX1-206ENST00000559389 NFE2L2Q16236 605 aa28.7■■■□□ 2.18
SNX1-206ENST00000559389 KCNQ2O43526 872 aa28.69■■■□□ 2.18
SNX1-206ENST00000559389 PTF1AQ7RTS3 328 aa28.69■■■□□ 2.18
SNX1-206ENST00000559389 BCL11BQ9C0K0 894 aaPredicted RBP28.69■■■□□ 2.18
SNX1-206ENST00000559389 RGPD3A6NKT7 1758 aaPredicted RBP28.69■■■□□ 2.18
SNX1-206ENST00000559389 RGPD4Q7Z3J3 1758 aa28.69■■■□□ 2.18
SNX1-206ENST00000559389 GNAT3A8MTJ3 354 aa28.68■■■□□ 2.18
SNX1-206ENST00000559389 MPRIPQ6WCQ1 1025 aa28.68■■■□□ 2.18
SNX1-206ENST00000559389 CCDC125Q86Z20 511 aa28.68■■■□□ 2.18
SNX1-206ENST00000559389 PRIM1P49642 420 aaKnown RBP28.67■■■□□ 2.18
SNX1-206ENST00000559389 SIPA1L3O60292 1781 aaPredicted RBP28.65■■■□□ 2.18
SNX1-206ENST00000559389 RNMTO43148 476 aaKnown RBP28.65■■■□□ 2.18
SNX1-206ENST00000559389 FAM9BQ8IZU0 186 aa28.65■■■□□ 2.18
SNX1-206ENST00000559389 SYTL4Q96C24 671 aaPredicted RBP28.65■■■□□ 2.18
SNX1-206ENST00000559389 CEMIPQ8WUJ3 1361 aa28.64■■■□□ 2.18
SNX1-206ENST00000559389 ERVV-2B6SEH9 535 aa28.64■■■□□ 2.18
SNX1-206ENST00000559389 SOCS7O14512 581 aa28.64■■■□□ 2.18
SNX1-206ENST00000559389 TMPOP42166 694 aaKnown RBP28.64■■■□□ 2.18
SNX1-206ENST00000559389 PAPPAQ13219 1627 aa28.63■■■□□ 2.17
SNX1-206ENST00000559389 LGR6Q9HBX8 967 aa28.63■■■□□ 2.17
SNX1-206ENST00000559389 HTATSF1O43719 755 aaKnown RBP28.62■■■□□ 2.17
SNX1-206ENST00000559389 SF3B2Q13435 895 aaKnown RBP28.62■■■□□ 2.17
SNX1-206ENST00000559389 IL17REQ8NFR9 667 aa28.61■■■□□ 2.17
SNX1-206ENST00000559389 TMOD3Q9NYL9 352 aa28.61■■■□□ 2.17
SNX1-206ENST00000559389 RRP7AQ9Y3A4 280 aaKnown RBP28.6■■■□□ 2.17
SNX1-206ENST00000559389 KAT6BQ8WYB5 2073 aa28.6■■■□□ 2.17
SNX1-206ENST00000559389 APAF1O14727 1248 aa28.59■■■□□ 2.17
SNX1-206ENST00000559389 CABP4P57796 275 aa28.59■■■□□ 2.17
SNX1-206ENST00000559389 PIGBQ92521 554 aa28.59■■■□□ 2.17
SNX1-206ENST00000559389 RTF1Q92541 710 aaKnown RBP28.59■■■□□ 2.17
SNX1-206ENST00000559389 LY75O60449 1722 aa28.59■■■□□ 2.17
SNX1-206ENST00000559389 RREB1Q92766 1687 aa28.58■■■□□ 2.17
SNX1-206ENST00000559389 APBA3O96018 575 aa28.58■■■□□ 2.17
SNX1-206ENST00000559389 RIPK4P57078 832 aa28.58■■■□□ 2.17
SNX1-206ENST00000559389 SLC52A2Q9HAB3 445 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms