RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 CCER2I3L3R5 266 aa28.32■■■□□ 2.12
CASC4-204ENST00000557945 OVOS2A0A0G2JMS6 1433 aa28.31■■■□□ 2.12
CASC4-204ENST00000557945 FCHSD2O94868 740 aa28.3■■■□□ 2.12
CASC4-204ENST00000557945 PRKAR2BP31323 418 aa28.3■■■□□ 2.12
CASC4-204ENST00000557945 PDE3BQ13370 1112 aa28.3■■■□□ 2.12
CASC4-204ENST00000557945 ZCRB1Q8TBF4 217 aaKnown RBP28.3■■■□□ 2.12
CASC4-204ENST00000557945 RSPH6AQ9H0K4 717 aa28.3■■■□□ 2.12
CASC4-204ENST00000557945 PARP4Q9UKK3 1724 aaKnown RBP28.3■■■□□ 2.12
CASC4-204ENST00000557945 ADAMTS8Q9UP79 889 aa28.28■■■□□ 2.12
CASC4-204ENST00000557945 PLEKHO1Q53GL0 409 aaPredicted RBP28.27■■■□□ 2.12
CASC4-204ENST00000557945 PNISRQ8TF01 805 aaKnown RBP28.27■■■□□ 2.12
CASC4-204ENST00000557945 SPG7Q9UQ90 795 aa28.27■■■□□ 2.12
CASC4-204ENST00000557945 TNS2Q63HR2 1409 aa28.27■■■□□ 2.12
CASC4-204ENST00000557945 LRRC37A3O60309 1634 aa28.27■■■□□ 2.12
CASC4-204ENST00000557945 DDX54Q8TDD1 881 aaKnown RBP28.26■■■□□ 2.12
CASC4-204ENST00000557945 PNNQ9H307 717 aaKnown RBP28.26■■■□□ 2.12
CASC4-204ENST00000557945 KRT27Q7Z3Y8 459 aa28.25■■■□□ 2.11
CASC4-204ENST00000557945 AMOTQ4VCS5 1084 aa28.24■■■□□ 2.11
CASC4-204ENST00000557945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.24■■■□□ 2.115e-6■■□□□ 13.2
CASC4-204ENST00000557945 NEFMP07197 916 aa28.24■■■□□ 2.11
CASC4-204ENST00000557945 FAM9BQ8IZU0 186 aa28.23■■■□□ 2.11
CASC4-204ENST00000557945 BRWD3Q6RI45 1802 aa28.22■■■□□ 2.11
CASC4-204ENST00000557945 PHACTR3Q96KR7 559 aa28.22■■■□□ 2.11
CASC4-204ENST00000557945 PCDH11XQ9BZA7 1347 aa28.21■■■□□ 2.11
CASC4-204ENST00000557945 PCDH11YQ9BZA8 1340 aa28.21■■■□□ 2.11
CASC4-204ENST00000557945 PLEKHG2Q9H7P9 1386 aa28.21■■■□□ 2.11
CASC4-204ENST00000557945 ZNF530Q6P9A1 599 aaPredicted RBP28.21■■■□□ 2.11
CASC4-204ENST00000557945 CCDC146Q8IYE0 955 aa28.21■■■□□ 2.11
CASC4-204ENST00000557945 MARCH10Q8NA82 808 aaPredicted RBP28.21■■■□□ 2.11
CASC4-204ENST00000557945 MAPK8IP3Q9UPT6 1336 aa28.21■■■□□ 2.11
CASC4-204ENST00000557945 FAM182BQ5T319 152 aa28.2■■■□□ 2.1
CASC4-204ENST00000557945 PKD1L3Q7Z443 1732 aa28.19■■■□□ 2.1
CASC4-204ENST00000557945 MTHFSDQ2M296 383 aaKnown RBP28.19■■■□□ 2.1
CASC4-204ENST00000557945 PLEKHF1Q96S99 279 aa28.19■■■□□ 2.1
CASC4-204ENST00000557945 CYP27B1O15528 508 aa28.17■■■□□ 2.1
CASC4-204ENST00000557945 C1orf141Q5JVX7 400 aa28.17■■■□□ 2.1
CASC4-204ENST00000557945 IFNL2Q8IZJ0 200 aa28.16■■■□□ 2.1
CASC4-204ENST00000557945 GAS2L2Q8NHY3 880 aa28.16■■■□□ 2.1
CASC4-204ENST00000557945 RUNDC1Q96C34 613 aa28.16■■■□□ 2.1
CASC4-204ENST00000557945 PHKG2P15735 406 aa28.15■■■□□ 2.1
CASC4-204ENST00000557945 ILDR2Q71H61 639 aa28.14■■■□□ 2.1
CASC4-204ENST00000557945 SHANK3Q9BYB0 1731 aa28.14■■■□□ 2.1
CASC4-204ENST00000557945 AKAP4Q5JQC9 854 aa28.11■■■□□ 2.09
CASC4-204ENST00000557945 FAM196AQ6ZSG2 479 aa28.11■■■□□ 2.09
CASC4-204ENST00000557945 HSP90AB1P08238 724 aaKnown RBP28.09■■■□□ 2.09
CASC4-204ENST00000557945 NFE2L2Q16236 605 aa28.09■■■□□ 2.09
CASC4-204ENST00000557945 GNAT3A8MTJ3 354 aa28.07■■■□□ 2.08
CASC4-204ENST00000557945 NKX1-1Q15270 411 aaPredicted RBP28.07■■■□□ 2.08
CASC4-204ENST00000557945 MPRIPQ6WCQ1 1025 aa28.07■■■□□ 2.08
CASC4-204ENST00000557945 ACSBG1Q96GR2 724 aa28.07■■■□□ 2.08
CASC4-204ENST00000557945 MAP3K5Q99683 1374 aa28.07■■■□□ 2.08
CASC4-204ENST00000557945 APAF1O14727 1248 aa28.06■■■□□ 2.08
CASC4-204ENST00000557945 RRP7AQ9Y3A4 280 aaKnown RBP28.06■■■□□ 2.08
CASC4-204ENST00000557945 TMPOP42166 694 aaKnown RBP28.05■■■□□ 2.08
CASC4-204ENST00000557945 NEUROD2Q15784 382 aa28.05■■■□□ 2.08
CASC4-204ENST00000557945 DCAF5Q96JK2 942 aa28.05■■■□□ 2.08
CASC4-204ENST00000557945 RIPK4P57078 832 aa28.04■■■□□ 2.08
CASC4-204ENST00000557945 RTF1Q92541 710 aaKnown RBP28.04■■■□□ 2.08
CASC4-204ENST00000557945 SENP3-EIF4A1A0A087X0R7 540 aa28.03■■■□□ 2.08
CASC4-204ENST00000557945 BCL9O00512 1426 aa28.03■■■□□ 2.08
CASC4-204ENST00000557945 SYTL4Q96C24 671 aaPredicted RBP28.02■■■□□ 2.08
CASC4-204ENST00000557945 PRIM1P49642 420 aaKnown RBP28.01■■■□□ 2.07
CASC4-204ENST00000557945 LGR6Q9HBX8 967 aa28.01■■■□□ 2.07
CASC4-204ENST00000557945 KAT6BQ8WYB5 2073 aa28.01■■■□□ 2.07
CASC4-204ENST00000557945 RNMTO43148 476 aaKnown RBP28■■■□□ 2.07
CASC4-204ENST00000557945 KDM6AO15550 1401 aaPredicted RBP28■■■□□ 2.07
CASC4-204ENST00000557945 TRIM37O94972 964 aa27.99■■■□□ 2.07
CASC4-204ENST00000557945 KCNQ2O43526 872 aa27.99■■■□□ 2.07
CASC4-204ENST00000557945 HTATSF1O43719 755 aaKnown RBP27.99■■■□□ 2.07
CASC4-204ENST00000557945 MCM10Q7L590 875 aa27.99■■■□□ 2.07
CASC4-204ENST00000557945 DOT1LQ8TEK3 1739 aa27.98■■■□□ 2.07
CASC4-204ENST00000557945 DCTN1Q14203 1278 aa27.98■■■□□ 2.07
CASC4-204ENST00000557945 IL17REQ8NFR9 667 aa27.98■■■□□ 2.07
CASC4-204ENST00000557945 ERVV-2B6SEH9 535 aa27.97■■■□□ 2.07
CASC4-204ENST00000557945 CABP4P57796 275 aa27.97■■■□□ 2.07
CASC4-204ENST00000557945 LMOD3Q0VAK6 560 aa27.97■■■□□ 2.07
CASC4-204ENST00000557945 DLG5Q8TDM6 1919 aa27.95■■■□□ 2.07
CASC4-204ENST00000557945 TOGARAM1Q9Y4F4 1720 aa27.95■■■□□ 2.06
CASC4-204ENST00000557945 PTF1AQ7RTS3 328 aa27.95■■■□□ 2.06
CASC4-204ENST00000557945 BCL11BQ9C0K0 894 aaPredicted RBP27.95■■■□□ 2.06
CASC4-204ENST00000557945 TMOD3Q9NYL9 352 aa27.95■■■□□ 2.06
CASC4-204ENST00000557945 SALL2Q9Y467 1007 aaPredicted RBP27.94■■■□□ 2.06
CASC4-204ENST00000557945 SBF2Q86WG5 1849 aa27.93■■■□□ 2.06
CASC4-204ENST00000557945 TEFQ10587 303 aa27.93■■■□□ 2.06
CASC4-204ENST00000557945 THUMPD2Q9BTF0 503 aaKnown RBP27.93■■■□□ 2.06
CASC4-204ENST00000557945 SCN11AQ9UI33 1791 aa27.92■■■□□ 2.06
CASC4-204ENST00000557945 NFATC2IPQ8NCF5 419 aa27.92■■■□□ 2.06
CASC4-204ENST00000557945 SLC52A2Q9HAB3 445 aa27.92■■■□□ 2.06
CASC4-204ENST00000557945 TRIM35Q9UPQ4 493 aa27.92■■■□□ 2.06
CASC4-204ENST00000557945 NHSQ6T4R5 1651 aa27.92■■■□□ 2.06
CASC4-204ENST00000557945 SF3B2Q13435 895 aaKnown RBP27.91■■■□□ 2.06
CASC4-204ENST00000557945 PIGBQ92521 554 aa27.91■■■□□ 2.06
CASC4-204ENST00000557945 CEMIPQ8WUJ3 1361 aa27.9■■■□□ 2.06
CASC4-204ENST00000557945 EP400Q96L91 3159 aa27.9■■■□□ 2.06
CASC4-204ENST00000557945 ADAMTS7Q9UKP4 1686 aa27.89■■■□□ 2.06
CASC4-204ENST00000557945 ITGB4P16144 1822 aa27.88■■■□□ 2.05
CASC4-204ENST00000557945 APBA3O96018 575 aa27.87■■■□□ 2.05
CASC4-204ENST00000557945 VIRMAQ69YN4 1812 aaKnown RBP27.87■■■□□ 2.05
CASC4-204ENST00000557945 UPF1Q92900 1129 aaKnown RBP eCLIP27.86■■■□□ 2.05
CASC4-204ENST00000557945 MRC1P22897 1456 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms