RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 NISCHQ9Y2I1 1504 aa50.47■■■■■ 5.67
CASC4-204ENST00000557945 CCDC180Q9P1Z9 1646 aa44.56■■■■■ 4.72
CASC4-204ENST00000557945 ABCC9O60706 1549 aa43.21■■■■■ 4.51
CASC4-204ENST00000557945 ZCCHC6Q5VYS8 1495 aaKnown RBP42.15■■■■■ 4.34
CASC4-204ENST00000557945 DCAF8L2P0C7V8 631 aa42.14■■■■■ 4.34
CASC4-204ENST00000557945 NACADO15069 1562 aa41.81■■■■■ 4.28
CASC4-204ENST00000557945 RB1CC1Q8TDY2 1594 aa41.74■■■■■ 4.27
CASC4-204ENST00000557945 DCAF1Q9Y4B6 1507 aa41.73■■■■■ 4.27
CASC4-204ENST00000557945 MYO15BQ96JP2 1530 aa41.68■■■■■ 4.26
CASC4-204ENST00000557945 SCRIBQ14160 1630 aa40.82■■■■■ 4.12
CASC4-204ENST00000557945 UNC13AQ9UPW8 1703 aa40.75■■■■■ 4.11
CASC4-204ENST00000557945 PABPN1Q86U42 306 aaKnown RBP eCLIP40.52■■■■■ 4.08
CASC4-204ENST00000557945 BICRAQ9NZM4 1560 aa40.43■■■■■ 4.06
CASC4-204ENST00000557945 SHROOM4Q9ULL8 1493 aa40.36■■■■■ 4.05
CASC4-204ENST00000557945 EIF4G1Q04637 1599 aaKnown RBP39.34■■■■□ 3.89
CASC4-204ENST00000557945 CECR2Q9BXF3 1484 aa39.29■■■■□ 3.88
CASC4-204ENST00000557945 DNAJC5BQ9UF47 199 aa39.15■■■■□ 3.86
CASC4-204ENST00000557945 BAZ1AQ9NRL2 1556 aaPredicted RBP39.08■■■■□ 3.85
CASC4-204ENST00000557945 CC2D2AQ9P2K1 1620 aa39.06■■■■□ 3.84
CASC4-204ENST00000557945 SMARCA4P51532 1647 aa39.03■■■■□ 3.84
CASC4-204ENST00000557945 MROH2BQ7Z745 1585 aa38.93■■■■□ 3.82
CASC4-204ENST00000557945 ATAD2BQ9ULI0 1458 aa38.71■■■■□ 3.79
CASC4-204ENST00000557945 RSF1Q96T23 1441 aaPredicted RBP38.69■■■■□ 3.78
CASC4-204ENST00000557945 SMARCA2P51531 1590 aa38.67■■■■□ 3.78
CASC4-204ENST00000557945 PEG3Q9GZU2 1588 aa38.6■■■■□ 3.77
CASC4-204ENST00000557945 NCAPD3P42695 1498 aa38.58■■■■□ 3.77
CASC4-204ENST00000557945 WIZO95785 1651 aa38.54■■■■□ 3.76
CASC4-204ENST00000557945 BAZ1BQ9UIG0 1483 aaKnown RBP38.44■■■■□ 3.74
CASC4-204ENST00000557945 HMGXB3Q12766 1538 aa38.41■■■■□ 3.74
CASC4-204ENST00000557945 SUPT5HO00267 1087 aaKnown RBP38.27■■■■□ 3.72
CASC4-204ENST00000557945 TOP2AP11388 1531 aaKnown RBP38.14■■■■□ 3.7
CASC4-204ENST00000557945 CCDC88BA6NC98 1476 aa37.73■■■■□ 3.63
CASC4-204ENST00000557945 NESP48681 1621 aa37.53■■■■□ 3.6
CASC4-204ENST00000557945 CADPSQ9ULU8 1353 aa37.52■■■■□ 3.6
CASC4-204ENST00000557945 LAMC3Q9Y6N6 1575 aa37.46■■■■□ 3.59
CASC4-204ENST00000557945 CFTRP13569 1480 aa37.38■■■■□ 3.58
CASC4-204ENST00000557945 PDS5BQ9NTI5 1447 aa37.24■■■■□ 3.55
CASC4-204ENST00000557945 ERCC6Q03468 1493 aa37.22■■■■□ 3.55
CASC4-204ENST00000557945 FANCD2Q9BXW9 1451 aa37.1■■■■□ 3.53
CASC4-204ENST00000557945 PRDM2Q13029 1718 aa37.09■■■■□ 3.53
CASC4-204ENST00000557945 KIF21AQ7Z4S6 1674 aa37.06■■■■□ 3.52
CASC4-204ENST00000557945 CEP164Q9UPV0 1460 aa37■■■■□ 3.51
CASC4-204ENST00000557945 MRC2Q9UBG0 1479 aa36.82■■■■□ 3.49
CASC4-204ENST00000557945 THOC2Q8NI27 1593 aaKnown RBP36.77■■■■□ 3.48
CASC4-204ENST00000557945 URB2Q14146 1524 aaKnown RBP36.68■■■■□ 3.46
CASC4-204ENST00000557945 WDR62O43379 1518 aa36.64■■■■□ 3.46
CASC4-204ENST00000557945 ABCC8Q09428 1581 aa36.56■■■■□ 3.44
CASC4-204ENST00000557945 TOPBP1Q92547 1522 aa36.55■■■■□ 3.44
CASC4-204ENST00000557945 DNMBPQ6XZF7 1577 aa36.54■■■■□ 3.44
CASC4-204ENST00000557945 CUX2O14529 1486 aa36.53■■■■□ 3.44
CASC4-204ENST00000557945 WRNQ14191 1432 aaPredicted RBP eCLIP36.49■■■■□ 3.43
CASC4-204ENST00000557945 CUX1P39880 1505 aa36.48■■■■□ 3.43
CASC4-204ENST00000557945 SYNJ1O43426 1573 aa36.34■■■■□ 3.41
CASC4-204ENST00000557945 TOP2BQ02880 1626 aa36.3■■■■□ 3.4
CASC4-204ENST00000557945 FGD5Q6ZNL6 1462 aa36.29■■■■□ 3.4
CASC4-204ENST00000557945 POLA1P09884 1462 aaPredicted RBP36.29■■■■□ 3.4
CASC4-204ENST00000557945 BIVM-ERCC5R4GMW8 1640 aa36.27■■■■□ 3.4
CASC4-204ENST00000557945 IFT140Q96RY7 1462 aa36.19■■■■□ 3.38
CASC4-204ENST00000557945 SOGA1O94964 1423 aa36.18■■■■□ 3.38
CASC4-204ENST00000557945 RAD54L2Q9Y4B4 1467 aa36.16■■■■□ 3.38
CASC4-204ENST00000557945 TRIM41Q8WV44 630 aa36.09■■■■□ 3.37
CASC4-204ENST00000557945 TARBP1Q13395 1621 aaKnown RBP36.07■■■■□ 3.37
CASC4-204ENST00000557945 ZNF608Q9ULD9 1512 aaPredicted RBP36■■■■□ 3.35
CASC4-204ENST00000557945 CHIC1Q5VXU3 224 aa35.98■■■■□ 3.35
CASC4-204ENST00000557945 ABCA10Q8WWZ4 1543 aa35.93■■■■□ 3.34
CASC4-204ENST00000557945 TDRD9Q8NDG6 1382 aaKnown RBP35.93■■■■□ 3.34
CASC4-204ENST00000557945 WDR97A6NE52 1622 aa35.88■■■■□ 3.33
CASC4-204ENST00000557945 AQRO60306 1485 aaKnown RBP eCLIP35.88■■■■□ 3.338e-8■■■■■ 39.5
CASC4-204ENST00000557945 EIF4G3O43432 1585 aaKnown RBP35.85■■■■□ 3.33
CASC4-204ENST00000557945 GAPVD1Q14C86 1478 aa35.76■■■■□ 3.31
CASC4-204ENST00000557945 ABCA5Q8WWZ7 1642 aa35.72■■■■□ 3.31
CASC4-204ENST00000557945 KIF27Q86VH2 1401 aa35.68■■■■□ 3.3
CASC4-204ENST00000557945 GRIN2BQ13224 1484 aa35.67■■■■□ 3.3
CASC4-204ENST00000557945 PBRM1Q86U86 1689 aa35.6■■■■□ 3.29
CASC4-204ENST00000557945 SNAPC4Q5SXM2 1469 aa35.56■■■■□ 3.28
CASC4-204ENST00000557945 RUSC2Q8N2Y8 1516 aa35.54■■■■□ 3.28
CASC4-204ENST00000557945 ERICH3Q5RHP9 1530 aa35.51■■■■□ 3.27
CASC4-204ENST00000557945 MAGI1Q96QZ7 1491 aaPredicted RBP35.49■■■■□ 3.27
CASC4-204ENST00000557945 IGF1RP08069 1367 aa35.47■■■■□ 3.27
CASC4-204ENST00000557945 FBLN2P98095 1184 aa35.43■■■■□ 3.26
CASC4-204ENST00000557945 CHMP7Q8WUX9 453 aaPredicted RBP35.38■■■■□ 3.26
CASC4-204ENST00000557945 FAM9AQ8IZU1 332 aaPredicted RBP35.38■■■■□ 3.25
CASC4-204ENST00000557945 FHAD1B1AJZ9 1412 aa35.36■■■■□ 3.25
CASC4-204ENST00000557945 SYNJ2O15056 1496 aa35.36■■■■□ 3.25
CASC4-204ENST00000557945 ADAMTS12P58397 1594 aa35.36■■■■□ 3.25
CASC4-204ENST00000557945 EEA1Q15075 1411 aa35.34■■■■□ 3.25
CASC4-204ENST00000557945 CUL7Q14999 1698 aa35.29■■■■□ 3.24
CASC4-204ENST00000557945 CARMIL1Q5VZK9 1371 aa35.29■■■■□ 3.24
CASC4-204ENST00000557945 CHD1O14646 1710 aa35.28■■■■□ 3.24
CASC4-204ENST00000557945 CSRNP3Q8WYN3 585 aa35.28■■■■□ 3.24
CASC4-204ENST00000557945 OSCARQ8IYS5 282 aa35.2■■■■□ 3.23
CASC4-204ENST00000557945 GRIN2AQ12879 1464 aa35.2■■■■□ 3.22
CASC4-204ENST00000557945 RAPGEF2Q9Y4G8 1499 aa35.12■■■■□ 3.21
CASC4-204ENST00000557945 PRXQ9BXM0 1461 aa35.11■■■■□ 3.21
CASC4-204ENST00000557945 NUP160Q12769 1436 aa35■■■■□ 3.19
CASC4-204ENST00000557945 CEP170Q5SW79 1584 aa34.99■■■■□ 3.19
CASC4-204ENST00000557945 EHMT2Q96KQ7 1210 aa34.93■■■■□ 3.18
CASC4-204ENST00000557945 KIF21BO75037 1637 aa34.92■■■■□ 3.18
CASC4-204ENST00000557945 CLASP1Q7Z460 1538 aa34.89■■■■□ 3.18
CASC4-204ENST00000557945 KIAA0586Q9BVV6 1533 aa34.82■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms