RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 PSDA5PKW4 1024 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-213ENST00000554600 TATP17735 454 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-213ENST00000554600 CNGB1Q14028 1251 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-213ENST00000554600 PTF1AQ7RTS3 328 aa14.56□□□□□ -0.08
SHMT2-213ENST00000554600 ZCRB1Q8TBF4 217 aaKnown RBP14.56□□□□□ -0.08
SHMT2-213ENST00000554600 PARD3Q8TEW0 1356 aa14.56□□□□□ -0.08
SHMT2-213ENST00000554600 WASHC2AQ641Q2 1341 aa14.55□□□□□ -0.08
SHMT2-213ENST00000554600 BCL9O00512 1426 aa14.54□□□□□ -0.08
SHMT2-213ENST00000554600 PKD1L3Q7Z443 1732 aa14.53□□□□□ -0.08
SHMT2-213ENST00000554600 KCNQ2O43526 872 aa14.53□□□□□ -0.08
SHMT2-213ENST00000554600 R3HDM1Q15032 1099 aaKnown RBP14.53□□□□□ -0.08
SHMT2-213ENST00000554600 ITGB4P16144 1822 aa14.52□□□□□ -0.08
SHMT2-213ENST00000554600 CC2D1BQ5T0F9 858 aaKnown RBP14.52□□□□□ -0.09
SHMT2-213ENST00000554600 NBPF14Q5TI25 921 aa14.52□□□□□ -0.09
SHMT2-213ENST00000554600 SYTL4Q96C24 671 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-213ENST00000554600 EIF4A2Q14240 407 aaKnown RBP14.51□□□□□ -0.09
SHMT2-213ENST00000554600 AMER1Q5JTC6 1135 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-213ENST00000554600 EYA1Q99502 592 aa14.51□□□□□ -0.09
SHMT2-213ENST00000554600 PLSCR1O15162 318 aa14.5□□□□□ -0.09
SHMT2-213ENST00000554600 PCDH11XQ9BZA7 1347 aa14.49□□□□□ -0.09
SHMT2-213ENST00000554600 PCDH11YQ9BZA8 1340 aa14.49□□□□□ -0.09
SHMT2-213ENST00000554600 PER1O15534 1290 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-213ENST00000554600 PRIM1P49642 420 aaKnown RBP14.47□□□□□ -0.09
SHMT2-213ENST00000554600 TXNRD1Q16881 649 aa14.47□□□□□ -0.09
SHMT2-213ENST00000554600 SPG7Q9UQ90 795 aa14.47□□□□□ -0.09
SHMT2-213ENST00000554600 TOGARAM1Q9Y4F4 1720 aa14.46□□□□□ -0.09
SHMT2-213ENST00000554600 VIRMAQ69YN4 1812 aaKnown RBP14.46□□□□□ -0.09
SHMT2-213ENST00000554600 NCAPD2Q15021 1401 aa14.46□□□□□ -0.09
SHMT2-213ENST00000554600 LY75O60449 1722 aa14.46□□□□□ -0.1
SHMT2-213ENST00000554600 MTHFSP49914 203 aa14.45□□□□□ -0.1
SHMT2-213ENST00000554600 LRP5O75197 1615 aa14.44□□□□□ -0.1
SHMT2-213ENST00000554600 IGSF1Q8N6C5 1336 aa14.44□□□□□ -0.1
SHMT2-213ENST00000554600 CYP27B1O15528 508 aa14.44□□□□□ -0.1
SHMT2-213ENST00000554600 PROM2Q8N271 834 aa14.44□□□□□ -0.1
SHMT2-213ENST00000554600 ANO8Q9HCE9 1232 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-213ENST00000554600 STK32BQ9NY57 414 aa14.43□□□□□ -0.1
SHMT2-213ENST00000554600 NPC1L1Q9UHC9 1359 aa14.43□□□□□ -0.1
SHMT2-213ENST00000554600 MPRIPQ6WCQ1 1025 aa14.42□□□□□ -0.1
SHMT2-213ENST00000554600 TAF1LQ8IZX4 1826 aa14.41□□□□□ -0.1
SHMT2-213ENST00000554600 TUBGCP6Q96RT7 1819 aa14.41□□□□□ -0.1
SHMT2-213ENST00000554600 SULT6B1Q6IMI4 303 aa14.41□□□□□ -0.1
SHMT2-213ENST00000554600 AEBP1Q8IUX7 1158 aa14.41□□□□□ -0.1
SHMT2-213ENST00000554600 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.41□□□□□ -0.1
SHMT2-213ENST00000554600 CASZ1Q86V15 1759 aa14.4□□□□□ -0.1
SHMT2-213ENST00000554600 PLEKHO1Q53GL0 409 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-213ENST00000554600 IFNL2Q8IZJ0 200 aa14.4□□□□□ -0.1
SHMT2-213ENST00000554600 C5P01031 1676 aa14.39□□□□□ -0.11
SHMT2-213ENST00000554600 DIAPH1O60610 1272 aaKnown RBP14.39□□□□□ -0.11
SHMT2-213ENST00000554600 PHKG2P15735 406 aa14.39□□□□□ -0.11
SHMT2-213ENST00000554600 IL13P35225 146 aa14.39□□□□□ -0.11
SHMT2-213ENST00000554600 ZNF530Q6P9A1 599 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-213ENST00000554600 PAPPAQ13219 1627 aa14.39□□□□□ -0.11
SHMT2-213ENST00000554600 SCN11AQ9UI33 1791 aa14.38□□□□□ -0.11
SHMT2-213ENST00000554600 HMOX1P09601 288 aa14.38□□□□□ -0.11
SHMT2-213ENST00000554600 KCNQ4P56696 695 aa14.38□□□□□ -0.11
SHMT2-213ENST00000554600 SLC15A2Q16348 729 aa14.38□□□□□ -0.11
SHMT2-213ENST00000554600 SLC27A3Q5K4L6 730 aa14.38□□□□□ -0.11
SHMT2-213ENST00000554600 QSER1Q2KHR3 1735 aa14.38□□□□□ -0.11
SHMT2-213ENST00000554600 U2SURPO15042 1029 aaKnown RBP14.37□□□□□ -0.11
SHMT2-213ENST00000554600 AMOTQ4VCS5 1084 aa14.37□□□□□ -0.11
SHMT2-213ENST00000554600 C1orf141Q5JVX7 400 aa14.37□□□□□ -0.11
SHMT2-213ENST00000554600 LRRC4BQ9NT99 713 aa14.37□□□□□ -0.11
SHMT2-213ENST00000554600 TMOD3Q9NYL9 352 aa14.37□□□□□ -0.11
SHMT2-213ENST00000554600 CCNL1Q9UK58 526 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-213ENST00000554600 PLEKHG2Q9H7P9 1386 aa14.36□□□□□ -0.11
SHMT2-213ENST00000554600 NKX1-1Q15270 411 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-213ENST00000554600 CFAP53Q96M91 514 aa14.36□□□□□ -0.11
SHMT2-213ENST00000554600 PALLDQ8WX93 1383 aa14.35□□□□□ -0.11
SHMT2-213ENST00000554600 HSP90AB1P08238 724 aaKnown RBP14.35□□□□□ -0.11
SHMT2-213ENST00000554600 SMARCC1Q92922 1105 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-213ENST00000554600 SPON1Q9HCB6 807 aa14.35□□□□□ -0.11
SHMT2-213ENST00000554600 KDRP35968 1356 aa14.34□□□□□ -0.11
SHMT2-213ENST00000554600 COL3A1P02461 1466 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-213ENST00000554600 ZBTB7AO95365 584 aa14.34□□□□□ -0.11
SHMT2-213ENST00000554600 ZNF827Q17R98 1081 aa14.34□□□□□ -0.11
SHMT2-213ENST00000554600 PIGBQ92521 554 aa14.34□□□□□ -0.11
SHMT2-213ENST00000554600 PDGFDQ9GZP0 370 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-213ENST00000554600 PPP1R1BQ9UD71 204 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-213ENST00000554600 YY1P25490 414 aa14.33□□□□□ -0.12
SHMT2-213ENST00000554600 PPP2R1AP30153 589 aa14.33□□□□□ -0.12
SHMT2-213ENST00000554600 ZEB1P37275 1124 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-213ENST00000554600 CABP4P57796 275 aa14.32□□□□□ -0.12
SHMT2-213ENST00000554600 DDX10Q13206 875 aaKnown RBP14.32□□□□□ -0.12
SHMT2-213ENST00000554600 DCAF5Q96JK2 942 aa14.32□□□□□ -0.12
SHMT2-213ENST00000554600 TFCP2L1Q9NZI6 479 aa14.32□□□□□ -0.12
SHMT2-213ENST00000554600 ATF5Q9Y2D1 282 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-213ENST00000554600 NUDCQ9Y266 331 aa14.31□□□□□ -0.12
SHMT2-213ENST00000554600 C4BP0C0L5 1744 aa14.31□□□□□ -0.12
SHMT2-213ENST00000554600 KDM6AO15550 1401 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-213ENST00000554600 UBR3Q6ZT12 1888 aa14.3□□□□□ -0.12
SHMT2-213ENST00000554600 ERVV-2B6SEH9 535 aa14.3□□□□□ -0.12
SHMT2-213ENST00000554600 MSH5O43196 834 aa14.3□□□□□ -0.12
SHMT2-213ENST00000554600 AKT1S1Q96B36 256 aa14.3□□□□□ -0.12
SHMT2-213ENST00000554600 ASAP1Q9ULH1 1129 aa14.3□□□□□ -0.12
SHMT2-213ENST00000554600 HMGB2P26583 209 aaKnown RBP14.28□□□□□ -0.12
SHMT2-213ENST00000554600 AKAP4Q5JQC9 854 aa14.28□□□□□ -0.12
SHMT2-213ENST00000554600 RBM42Q9BTD8 480 aaKnown RBP14.28□□□□□ -0.12
SHMT2-213ENST00000554600 MTFR1LQ9H019 292 aa14.28□□□□□ -0.12
SHMT2-213ENST00000554600 PNPLA7Q6ZV29 1317 aa14.27□□□□□ -0.12
SHMT2-213ENST00000554600 LOC102724428A0A0B4J2F2 783 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 1187.8 ms