RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 BTAF1O14981 1849 aa17.85■□□□□ 0.45
SHMT2-211ENST00000554310 AMER1Q5JTC6 1135 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-211ENST00000554310 USHBP1Q8N6Y0 703 aa17.85■□□□□ 0.45
SHMT2-211ENST00000554310 PLSCR1O15162 318 aa17.84■□□□□ 0.45
SHMT2-211ENST00000554310 TATP17735 454 aaPredicted RBP17.83■□□□□ 0.44
SHMT2-211ENST00000554310 PTF1AQ7RTS3 328 aa17.83■□□□□ 0.44
SHMT2-211ENST00000554310 ZCRB1Q8TBF4 217 aaKnown RBP17.83■□□□□ 0.44
SHMT2-211ENST00000554310 PLEKHG2Q9H7P9 1386 aa17.82■□□□□ 0.44
SHMT2-211ENST00000554310 NPC1L1Q9UHC9 1359 aa17.82■□□□□ 0.44
SHMT2-211ENST00000554310 DDX54Q8TDD1 881 aaKnown RBP17.82■□□□□ 0.44
SHMT2-211ENST00000554310 KAT6BQ8WYB5 2073 aa17.82■□□□□ 0.44
SHMT2-211ENST00000554310 PCDH11XQ9BZA7 1347 aa17.81■□□□□ 0.44
SHMT2-211ENST00000554310 PCDH11YQ9BZA8 1340 aa17.81■□□□□ 0.44
SHMT2-211ENST00000554310 LRP5O75197 1615 aa17.81■□□□□ 0.44
SHMT2-211ENST00000554310 PER1O15534 1290 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-211ENST00000554310 KCNQ2O43526 872 aa17.79■□□□□ 0.44
SHMT2-211ENST00000554310 EIF4A2Q14240 407 aaKnown RBP17.79■□□□□ 0.44
SHMT2-211ENST00000554310 ACSBG1Q96GR2 724 aa17.79■□□□□ 0.44
SHMT2-211ENST00000554310 EYA1Q99502 592 aa17.79■□□□□ 0.44
SHMT2-211ENST00000554310 IGSF1Q8N6C5 1336 aa17.78■□□□□ 0.44
SHMT2-211ENST00000554310 PSDA5PKW4 1024 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-211ENST00000554310 NBPF14Q5TI25 921 aa17.78■□□□□ 0.44
SHMT2-211ENST00000554310 R3HDM1Q15032 1099 aaKnown RBP17.77■□□□□ 0.44
SHMT2-211ENST00000554310 TOGARAM1Q9Y4F4 1720 aa17.75■□□□□ 0.43
SHMT2-211ENST00000554310 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.75■□□□□ 0.43
SHMT2-211ENST00000554310 PAPPAQ13219 1627 aa17.75■□□□□ 0.43
SHMT2-211ENST00000554310 SRCAPQ6ZRS2 3230 aa17.75■□□□□ 0.43
SHMT2-211ENST00000554310 TXNRD1Q16881 649 aa17.74■□□□□ 0.43
SHMT2-211ENST00000554310 CC2D1BQ5T0F9 858 aaKnown RBP17.74■□□□□ 0.43
SHMT2-211ENST00000554310 SPG7Q9UQ90 795 aa17.74■□□□□ 0.43
SHMT2-211ENST00000554310 LY75O60449 1722 aa17.74■□□□□ 0.43
SHMT2-211ENST00000554310 CYP27B1O15528 508 aa17.72■□□□□ 0.43
SHMT2-211ENST00000554310 PRIM1P49642 420 aaKnown RBP17.72■□□□□ 0.43
SHMT2-211ENST00000554310 PROM2Q8N271 834 aa17.72■□□□□ 0.43
SHMT2-211ENST00000554310 SYTL4Q96C24 671 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-211ENST00000554310 ITGB4P16144 1822 aa17.72■□□□□ 0.43
SHMT2-211ENST00000554310 KDRP35968 1356 aa17.71■□□□□ 0.43
SHMT2-211ENST00000554310 CASZ1Q86V15 1759 aa17.71■□□□□ 0.43
SHMT2-211ENST00000554310 MTHFSP49914 203 aa17.7■□□□□ 0.42
SHMT2-211ENST00000554310 ANO8Q9HCE9 1232 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-211ENST00000554310 IL13P35225 146 aa17.69■□□□□ 0.42
SHMT2-211ENST00000554310 NKX1-1Q15270 411 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-211ENST00000554310 COL3A1P02461 1466 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-211ENST00000554310 SLC27A3Q5K4L6 730 aa17.68■□□□□ 0.42
SHMT2-211ENST00000554310 IFNL2Q8IZJ0 200 aa17.67■□□□□ 0.42
SHMT2-211ENST00000554310 STK32BQ9NY57 414 aa17.67■□□□□ 0.42
SHMT2-211ENST00000554310 QSER1Q2KHR3 1735 aa17.67■□□□□ 0.42
SHMT2-211ENST00000554310 PHKG2P15735 406 aa17.66■□□□□ 0.42
SHMT2-211ENST00000554310 AEBP1Q8IUX7 1158 aa17.66■□□□□ 0.42
SHMT2-211ENST00000554310 AMOTQ4VCS5 1084 aa17.65■□□□□ 0.42
SHMT2-211ENST00000554310 PLEKHO1Q53GL0 409 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-211ENST00000554310 SULT6B1Q6IMI4 303 aa17.65■□□□□ 0.42
SHMT2-211ENST00000554310 DIAPH1O60610 1272 aaKnown RBP17.64■□□□□ 0.41
SHMT2-211ENST00000554310 SLC15A2Q16348 729 aa17.64■□□□□ 0.41
SHMT2-211ENST00000554310 C5P01031 1676 aa17.64■□□□□ 0.41
SHMT2-211ENST00000554310 HSP90AB1P08238 724 aaKnown RBP17.63■□□□□ 0.41
SHMT2-211ENST00000554310 CNGB1Q14028 1251 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-211ENST00000554310 MPRIPQ6WCQ1 1025 aa17.63■□□□□ 0.41
SHMT2-211ENST00000554310 LRRC4BQ9NT99 713 aa17.63■□□□□ 0.41
SHMT2-211ENST00000554310 PALLDQ8WX93 1383 aa17.63■□□□□ 0.41
SHMT2-211ENST00000554310 ZNF530Q6P9A1 599 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-211ENST00000554310 TUBGCP6Q96RT7 1819 aa17.62■□□□□ 0.41
SHMT2-211ENST00000554310 TAF1LQ8IZX4 1826 aa17.61■□□□□ 0.41
SHMT2-211ENST00000554310 SMARCC1Q92922 1105 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-211ENST00000554310 CCNL1Q9UK58 526 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-211ENST00000554310 DCAF5Q96JK2 942 aa17.6■□□□□ 0.41
SHMT2-211ENST00000554310 CFAP53Q96M91 514 aa17.6■□□□□ 0.41
SHMT2-211ENST00000554310 TMOD3Q9NYL9 352 aa17.6■□□□□ 0.41
SHMT2-211ENST00000554310 KDM6AO15550 1401 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-211ENST00000554310 SCN11AQ9UI33 1791 aa17.59■□□□□ 0.41
SHMT2-211ENST00000554310 HMGB2P26583 209 aaKnown RBP17.59■□□□□ 0.41
SHMT2-211ENST00000554310 ZNF827Q17R98 1081 aa17.59■□□□□ 0.41
SHMT2-211ENST00000554310 C1orf141Q5JVX7 400 aa17.59■□□□□ 0.41
SHMT2-211ENST00000554310 PIGBQ92521 554 aa17.59■□□□□ 0.41
SHMT2-211ENST00000554310 SPON1Q9HCB6 807 aa17.59■□□□□ 0.41
SHMT2-211ENST00000554310 AKT1S1Q96B36 256 aa17.58■□□□□ 0.4
SHMT2-211ENST00000554310 ERVV-2B6SEH9 535 aa17.57■□□□□ 0.4
SHMT2-211ENST00000554310 HMOX1P09601 288 aa17.57■□□□□ 0.4
SHMT2-211ENST00000554310 PPP2R1AP30153 589 aa17.57■□□□□ 0.4
SHMT2-211ENST00000554310 ZNF831Q5JPB2 1677 aa17.57■□□□□ 0.4
SHMT2-211ENST00000554310 VIRMAQ69YN4 1812 aaKnown RBP17.56■□□□□ 0.4
SHMT2-211ENST00000554310 ADAMTS7Q9UKP4 1686 aa17.56■□□□□ 0.4
SHMT2-211ENST00000554310 MRC1P22897 1456 aa17.56■□□□□ 0.4
SHMT2-211ENST00000554310 C4BP0C0L5 1744 aa17.55■□□□□ 0.4
SHMT2-211ENST00000554310 U2SURPO15042 1029 aaKnown RBP17.55■□□□□ 0.4
SHMT2-211ENST00000554310 KCNQ4P56696 695 aa17.55■□□□□ 0.4
SHMT2-211ENST00000554310 PDGFDQ9GZP0 370 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-211ENST00000554310 AKAP4Q5JQC9 854 aa17.54■□□□□ 0.4
SHMT2-211ENST00000554310 MTFR1LQ9H019 292 aa17.53■□□□□ 0.4
SHMT2-211ENST00000554310 COL24A1Q17RW2 1714 aa17.52■□□□□ 0.4
SHMT2-211ENST00000554310 PNPLA7Q6ZV29 1317 aa17.52■□□□□ 0.4
SHMT2-211ENST00000554310 LOC102724428A0A0B4J2F2 783 aa17.52■□□□□ 0.4
SHMT2-211ENST00000554310 ZBTB7AO95365 584 aa17.52■□□□□ 0.4
SHMT2-211ENST00000554310 SIK1P57059 783 aa17.52■□□□□ 0.4
SHMT2-211ENST00000554310 TFCP2L1Q9NZI6 479 aa17.52■□□□□ 0.4
SHMT2-211ENST00000554310 NUDCQ9Y266 331 aa17.52■□□□□ 0.4
SHMT2-211ENST00000554310 CICQ96RK0 1608 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-211ENST00000554310 CABP4P57796 275 aa17.51■□□□□ 0.39
SHMT2-211ENST00000554310 UBR3Q6ZT12 1888 aa17.51■□□□□ 0.39
SHMT2-211ENST00000554310 ATG3Q9NT62 314 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms