RNA–Protein interactions for RNA: ENST00000553491.5

ATXN3-220, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 857 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-220ENST00000553491 RAD54L2Q9Y4B4 1467 aa7.91□□□□□ -1.14
ATXN3-220ENST00000553491 CUX1P39880 1505 aa7.91□□□□□ -1.14
ATXN3-220ENST00000553491 FGD5Q6ZNL6 1462 aa7.9□□□□□ -1.14
ATXN3-220ENST00000553491 IFT140Q96RY7 1462 aa7.9□□□□□ -1.14
ATXN3-220ENST00000553491 SOS2Q07890 1332 aaPredicted RBP7.9□□□□□ -1.14
ATXN3-220ENST00000553491 UBTFP17480 764 aaKnown RBP7.9□□□□□ -1.14
ATXN3-220ENST00000553491 RAB15P59190 212 aa7.9□□□□□ -1.14
ATXN3-220ENST00000553491 C6orf118Q5T5N4 469 aa7.9□□□□□ -1.14
ATXN3-220ENST00000553491 TSEN34Q9BSV6 310 aaKnown RBP7.9□□□□□ -1.14
ATXN3-220ENST00000553491 ZNF608Q9ULD9 1512 aaPredicted RBP7.89□□□□□ -1.15
ATXN3-220ENST00000553491 A6NJR5 290 aa7.89□□□□□ -1.15
ATXN3-220ENST00000553491 NFX1Q12986 1120 aaKnown RBP7.89□□□□□ -1.15
ATXN3-220ENST00000553491 LCE2CQ5TA81 110 aa7.89□□□□□ -1.15
ATXN3-220ENST00000553491 TREML4Q6UXN2 200 aa7.89□□□□□ -1.15
ATXN3-220ENST00000553491 PRM3Q9NNZ6 103 aa7.89□□□□□ -1.15
ATXN3-220ENST00000553491 CEP126Q9P2H0 1117 aa7.89□□□□□ -1.15
ATXN3-220ENST00000553491 AQRO60306 1485 aaKnown RBP eCLIP7.88□□□□□ -1.15
ATXN3-220ENST00000553491 POLA1P09884 1462 aaPredicted RBP7.88□□□□□ -1.15
ATXN3-220ENST00000553491 TDRD9Q8NDG6 1382 aaKnown RBP7.88□□□□□ -1.15
ATXN3-220ENST00000553491 SOBPA7XYQ1 873 aa7.88□□□□□ -1.15
ATXN3-220ENST00000553491 SPINT1O43278 529 aa7.88□□□□□ -1.15
ATXN3-220ENST00000553491 BMP2P12643 396 aa7.88□□□□□ -1.15
ATXN3-220ENST00000553491 ABL2P42684 1182 aa7.88□□□□□ -1.15
ATXN3-220ENST00000553491 PHTF2Q8N3S3 785 aa7.88□□□□□ -1.15
ATXN3-220ENST00000553491 POM121Q96HA1 1249 aa7.88□□□□□ -1.15
ATXN3-220ENST00000553491 AGBL1Q96MI9 1066 aa7.88□□□□□ -1.15
ATXN3-220ENST00000553491 ZNF330Q9Y3S2 320 aaPredicted RBP7.88□□□□□ -1.15
ATXN3-220ENST00000553491 TARBP1Q13395 1621 aaKnown RBP7.88□□□□□ -1.15
ATXN3-220ENST00000553491 VAC14Q08AM6 782 aa7.87□□□□□ -1.15
ATXN3-220ENST00000553491 CCDC125Q86Z20 511 aa7.87□□□□□ -1.15
ATXN3-220ENST00000553491 EIF4G3O43432 1585 aaKnown RBP7.87□□□□□ -1.15
ATXN3-220ENST00000553491 WRNQ14191 1432 aaPredicted RBP eCLIP7.86□□□□□ -1.15
ATXN3-220ENST00000553491 CHD1O14646 1710 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 SYNJ1O43426 1573 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 TERTO14746 1132 aaKnown RBP7.86□□□□□ -1.15
ATXN3-220ENST00000553491 UPP2O95045 317 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 ADH1AP07327 375 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 ERVK-9P63128 1117 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 RNF20Q5VTR2 975 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 ZNF592Q92610 1267 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 CYLDQ9NQC7 956 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 DNMT3LQ9UJW3 386 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 PBRM1Q86U86 1689 aa7.86□□□□□ -1.15
ATXN3-220ENST00000553491 BIVM-ERCC5R4GMW8 1640 aa7.85□□□□□ -1.15
ATXN3-220ENST00000553491 SCTRP47872 440 aa7.85□□□□□ -1.15
ATXN3-220ENST00000553491 CCDC85AQ96PX6 553 aaPredicted RBP7.85□□□□□ -1.15
ATXN3-220ENST00000553491 C1orf115Q9H7X2 142 aa7.85□□□□□ -1.15
ATXN3-220ENST00000553491 CHIC2Q9UKJ5 165 aa7.85□□□□□ -1.15
ATXN3-220ENST00000553491 TOP2BQ02880 1626 aa7.85□□□□□ -1.15
ATXN3-220ENST00000553491 TRAK2O60296 914 aa7.84□□□□□ -1.15
ATXN3-220ENST00000553491 PTGIRP43119 386 aa7.84□□□□□ -1.15
ATXN3-220ENST00000553491 EIF4G2P78344 907 aaKnown RBP eCLIP7.84□□□□□ -1.15
ATXN3-220ENST00000553491 RELBQ01201 579 aa7.84□□□□□ -1.15
ATXN3-220ENST00000553491 WASHC4Q2M389 1173 aa7.84□□□□□ -1.15
ATXN3-220ENST00000553491 TSGA10IPQ3SY00 556 aa7.84□□□□□ -1.15
ATXN3-220ENST00000553491 ZNF395Q9H8N7 513 aaPredicted RBP7.84□□□□□ -1.15
ATXN3-220ENST00000553491 NXF1Q9UBU9 619 aaKnown RBP7.84□□□□□ -1.15
ATXN3-220ENST00000553491 ARID3CA6NKF2 412 aa7.83□□□□□ -1.16
ATXN3-220ENST00000553491 TTLL8A6PVC2 850 aa7.83□□□□□ -1.16
ATXN3-220ENST00000553491 CTSOP43234 321 aaPredicted RBP7.83□□□□□ -1.16
ATXN3-220ENST00000553491 CC2D2BQ6DHV5 1058 aa7.83□□□□□ -1.16
ATXN3-220ENST00000553491 FNBP4Q8N3X1 1017 aaPredicted RBP7.83□□□□□ -1.16
ATXN3-220ENST00000553491 CHMP7Q8WUX9 453 aaPredicted RBP7.83□□□□□ -1.16
ATXN3-220ENST00000553491 CDCA7Q9BWT1 371 aaPredicted RBP7.83□□□□□ -1.16
ATXN3-220ENST00000553491 WDR97A6NE52 1622 aa7.82□□□□□ -1.16
ATXN3-220ENST00000553491 RAD21O60216 631 aa7.82□□□□□ -1.16
ATXN3-220ENST00000553491 WFS1O76024 890 aa7.82□□□□□ -1.16
ATXN3-220ENST00000553491 PROSER2Q86WR7 435 aaPredicted RBP7.82□□□□□ -1.16
ATXN3-220ENST00000553491 NPAS3Q8IXF0 933 aa7.82□□□□□ -1.16
ATXN3-220ENST00000553491 INSM2Q96T92 566 aaPredicted RBP7.82□□□□□ -1.16
ATXN3-220ENST00000553491 OSBPL3Q9H4L5 887 aa7.82□□□□□ -1.16
ATXN3-220ENST00000553491 PCDHB11Q9Y5F2 797 aa7.82□□□□□ -1.16
ATXN3-220ENST00000553491 H3BM21 787 aa7.81□□□□□ -1.16
ATXN3-220ENST00000553491 MAN1A2O60476 641 aa7.81□□□□□ -1.16
ATXN3-220ENST00000553491 FOXD4L5Q5VV16 416 aaPredicted RBP7.81□□□□□ -1.16
ATXN3-220ENST00000553491 ALG2Q9H553 416 aa7.81□□□□□ -1.16
ATXN3-220ENST00000553491 FIGNL2A6NMB9 653 aa7.8□□□□□ -1.16
ATXN3-220ENST00000553491 RNF217Q8TC41 542 aa7.8□□□□□ -1.16
ATXN3-220ENST00000553491 GAPVD1Q14C86 1478 aa7.8□□□□□ -1.16
ATXN3-220ENST00000553491 ATP5J2-PTCD1G3V325 749 aa7.79□□□□□ -1.16
ATXN3-220ENST00000553491 VEGFBP49765 207 aa7.79□□□□□ -1.16
ATXN3-220ENST00000553491 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.79□□□□□ -1.16
ATXN3-220ENST00000553491 ARXQ96QS3 562 aa7.79□□□□□ -1.16
ATXN3-220ENST00000553491 SOX11P35716 441 aa7.78□□□□□ -1.16
ATXN3-220ENST00000553491 ERBB4Q15303 1308 aa7.78□□□□□ -1.16
ATXN3-220ENST00000553491 GRIN2BQ13224 1484 aa7.77□□□□□ -1.17
ATXN3-220ENST00000553491 SNAPC4Q5SXM2 1469 aa7.77□□□□□ -1.17
ATXN3-220ENST00000553491 A0A1W2PRU2 124 aa7.77□□□□□ -1.17
ATXN3-220ENST00000553491 RNF144AP50876 292 aaPredicted RBP7.77□□□□□ -1.17
ATXN3-220ENST00000553491 ADAMTS19Q8TE59 1207 aa7.77□□□□□ -1.17
ATXN3-220ENST00000553491 TRIM52Q96A61 297 aa7.77□□□□□ -1.17
ATXN3-220ENST00000553491 POLMQ9NP87 494 aaPredicted RBP7.77□□□□□ -1.17
ATXN3-220ENST00000553491 ZNF777Q9ULD5 760 aaPredicted RBP7.77□□□□□ -1.17
ATXN3-220ENST00000553491 ABCA10Q8WWZ4 1543 aa7.77□□□□□ -1.17
ATXN3-220ENST00000553491 POM121CA8CG34 1229 aa7.76□□□□□ -1.17
ATXN3-220ENST00000553491 WIPF1O43516 503 aa7.76□□□□□ -1.17
ATXN3-220ENST00000553491 PPFIA3O75145 1194 aa7.76□□□□□ -1.17
ATXN3-220ENST00000553491 PTSQ03393 145 aa7.76□□□□□ -1.17
ATXN3-220ENST00000553491 SEMA3FQ13275 785 aa7.76□□□□□ -1.17
ATXN3-220ENST00000553491 SLFNL1Q499Z3 407 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms