RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 UNC93B1Q9H1C4 597 aa9□□□□□ -0.97
SCFD1-208ENST00000553278 MAGEB6P1A0A0J9YX57 407 aa8.99□□□□□ -0.97
SCFD1-208ENST00000553278 GIGYF1O75420 1035 aaPredicted RBP8.99□□□□□ -0.97
SCFD1-208ENST00000553278 FKBP4Q02790 459 aaKnown RBP eCLIP8.99□□□□□ -0.97
SCFD1-208ENST00000553278 USP4Q13107 963 aa8.99□□□□□ -0.97
SCFD1-208ENST00000553278 COL19A1Q14993 1142 aa8.99□□□□□ -0.97
SCFD1-208ENST00000553278 C8orf37Q96NL8 207 aa8.99□□□□□ -0.97
SCFD1-208ENST00000553278 FBXO33Q7Z6M2 555 aa8.98□□□□□ -0.97
SCFD1-208ENST00000553278 CCDC125Q86Z20 511 aa8.98□□□□□ -0.97
SCFD1-208ENST00000553278 PCDHGA11Q9Y5H2 935 aa8.98□□□□□ -0.97
SCFD1-208ENST00000553278 PTCD1O75127 700 aaKnown RBP8.97□□□□□ -0.97
SCFD1-208ENST00000553278 BCAMP50895 628 aa8.97□□□□□ -0.97
SCFD1-208ENST00000553278 ADGRD1Q6QNK2 874 aa8.97□□□□□ -0.97
SCFD1-208ENST00000553278 CCDC24Q8N4L8 307 aa8.97□□□□□ -0.97
SCFD1-208ENST00000553278 PRDM9Q9NQV7 894 aa8.97□□□□□ -0.97
SCFD1-208ENST00000553278 AGERQ15109 404 aa8.96□□□□□ -0.98
SCFD1-208ENST00000553278 BPHLQ86WA6 291 aaPredicted RBP8.96□□□□□ -0.98
SCFD1-208ENST00000553278 SLC10A4Q96EP9 437 aa8.96□□□□□ -0.98
SCFD1-208ENST00000553278 MKNK1Q9BUB5 465 aa8.96□□□□□ -0.98
SCFD1-208ENST00000553278 SEPT3Q9UH03 358 aa8.96□□□□□ -0.98
SCFD1-208ENST00000553278 DNMT3AQ9Y6K1 912 aaPredicted RBP8.96□□□□□ -0.98
SCFD1-208ENST00000553278 M0R2N6 131 aa8.95□□□□□ -0.98
SCFD1-208ENST00000553278 HSP90B1P14625 803 aaKnown RBP8.95□□□□□ -0.98
SCFD1-208ENST00000553278 WEE1P30291 646 aa8.95□□□□□ -0.98
SCFD1-208ENST00000553278 NBPF20Q3BBV1 942 aa8.95□□□□□ -0.98
SCFD1-208ENST00000553278 EAPPQ56P03 285 aaPredicted RBP8.95□□□□□ -0.98
SCFD1-208ENST00000553278 SH3RF1Q7Z6J0 888 aa8.95□□□□□ -0.98
SCFD1-208ENST00000553278 DRC1Q96MC2 740 aa8.95□□□□□ -0.98
SCFD1-208ENST00000553278 PCDHB11Q9Y5F2 797 aa8.95□□□□□ -0.98
SCFD1-208ENST00000553278 ZC3H6P61129 1189 aaKnown RBP8.94□□□□□ -0.98
SCFD1-208ENST00000553278 ERFEQ4G0M1 354 aa8.94□□□□□ -0.98
SCFD1-208ENST00000553278 RGL4Q8IZJ4 473 aa8.94□□□□□ -0.98
SCFD1-208ENST00000553278 SREK1Q8WXA9 508 aaKnown RBP8.94□□□□□ -0.98
SCFD1-208ENST00000553278 LGR5O75473 907 aa8.93□□□□□ -0.98
SCFD1-208ENST00000553278 MYCP01106 439 aaPredicted RBP8.93□□□□□ -0.98
SCFD1-208ENST00000553278 COPS2P61201 443 aa8.93□□□□□ -0.98
SCFD1-208ENST00000553278 ARHGAP4P98171 946 aa8.93□□□□□ -0.98
SCFD1-208ENST00000553278 PTCRAQ6ISU1 281 aaPredicted RBP8.93□□□□□ -0.98
SCFD1-208ENST00000553278 SEPT12Q8IYM1 358 aa8.93□□□□□ -0.98
SCFD1-208ENST00000553278 WNT2BQ93097 391 aa8.93□□□□□ -0.98
SCFD1-208ENST00000553278 COL26A1Q96A83 441 aa8.93□□□□□ -0.98
SCFD1-208ENST00000553278 PUS7Q96PZ0 661 aaKnown RBP8.93□□□□□ -0.98
SCFD1-208ENST00000553278 CDV3Q9UKY7 258 aaKnown RBP8.93□□□□□ -0.98
SCFD1-208ENST00000553278 HRO43593 1189 aa8.92□□□□□ -0.98
SCFD1-208ENST00000553278 ADH1BP00325 375 aa8.92□□□□□ -0.98
SCFD1-208ENST00000553278 LSM11P83369 360 aaKnown RBP eCLIP8.92□□□□□ -0.98
SCFD1-208ENST00000553278 TAGLNQ01995 201 aaKnown RBP8.92□□□□□ -0.98
SCFD1-208ENST00000553278 FKBP5Q13451 457 aaPredicted RBP8.92□□□□□ -0.98
SCFD1-208ENST00000553278 ECM1Q16610 540 aa8.92□□□□□ -0.98
SCFD1-208ENST00000553278 ANKRD13DQ6ZTN6 518 aa8.92□□□□□ -0.98
SCFD1-208ENST00000553278 TSEN2Q8NCE0 465 aaKnown RBP8.92□□□□□ -0.98
SCFD1-208ENST00000553278 PLA2G2EQ9NZK7 142 aa8.92□□□□□ -0.98
SCFD1-208ENST00000553278 ESPNB1AK53 854 aa8.91□□□□□ -0.98
SCFD1-208ENST00000553278 FAM13AO94988 1023 aa8.91□□□□□ -0.98
SCFD1-208ENST00000553278 RECKO95980 971 aa8.91□□□□□ -0.98
SCFD1-208ENST00000553278 MTMR3Q13615 1198 aa8.91□□□□□ -0.98
SCFD1-208ENST00000553278 TSNAXIP1Q2TAA8 658 aa8.91□□□□□ -0.98
SCFD1-208ENST00000553278 HELQQ8TDG4 1101 aa8.91□□□□□ -0.98
SCFD1-208ENST00000553278 BAP1Q92560 729 aa8.91□□□□□ -0.98
SCFD1-208ENST00000553278 ZNF511Q8NB15 262 aa8.89□□□□□ -0.99
SCFD1-208ENST00000553278 FOXJ1Q92949 421 aa8.89□□□□□ -0.99
SCFD1-208ENST00000553278 WBP1LQ9NX94 342 aa8.89□□□□□ -0.99
SCFD1-208ENST00000553278 FOXO3O43524 673 aa8.88□□□□□ -0.99
SCFD1-208ENST00000553278 ZPR1O75312 459 aa8.88□□□□□ -0.99
SCFD1-208ENST00000553278 IGFBP4P22692 258 aa8.88□□□□□ -0.99
SCFD1-208ENST00000553278 LINC01559Q495D7 138 aa8.88□□□□□ -0.99
SCFD1-208ENST00000553278 CAPN12Q6ZSI9 719 aa8.88□□□□□ -0.99
SCFD1-208ENST00000553278 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.88□□□□□ -0.99
SCFD1-208ENST00000553278 ESF1Q9H501 851 aaKnown RBP8.88□□□□□ -0.99
SCFD1-208ENST00000553278 NDUFB5O43674 189 aa8.87□□□□□ -0.99
SCFD1-208ENST00000553278 TLL1O43897 1013 aa8.87□□□□□ -0.99
SCFD1-208ENST00000553278 ITGAEP38570 1179 aa8.87□□□□□ -0.99
SCFD1-208ENST00000553278 FGD1P98174 961 aa8.87□□□□□ -0.99
SCFD1-208ENST00000553278 NAA30Q147X3 362 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-208ENST00000553278 SF3A1Q15459 793 aaKnown RBP8.87□□□□□ -0.99
SCFD1-208ENST00000553278 NAALADL2Q58DX5 795 aa8.87□□□□□ -0.99
SCFD1-208ENST00000553278 VTI1AQ96AJ9 217 aa8.87□□□□□ -0.99
SCFD1-208ENST00000553278 PURBQ96QR8 312 aaKnown RBP8.87□□□□□ -0.99
SCFD1-208ENST00000553278 RBCK1Q9BYM8 510 aa8.87□□□□□ -0.99
SCFD1-208ENST00000553278 ZNF358Q9NW07 568 aa8.87□□□□□ -0.99
SCFD1-208ENST00000553278 NPR3P17342 541 aa8.86□□□□□ -0.99
SCFD1-208ENST00000553278 C4orf48Q5BLP8 95 aa8.86□□□□□ -0.99
SCFD1-208ENST00000553278 TRMT44Q8IYL2 757 aaKnown RBP8.86□□□□□ -0.99
SCFD1-208ENST00000553278 FAM177A1Q8N128 213 aaPredicted RBP8.86□□□□□ -0.99
SCFD1-208ENST00000553278 C1QTNF2Q9BXJ5 285 aa8.86□□□□□ -0.99
SCFD1-208ENST00000553278 SLC6A16Q9GZN6 736 aa8.86□□□□□ -0.99
SCFD1-208ENST00000553278 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.86□□□□□ -0.99
SCFD1-208ENST00000553278 SCAMP3O14828 347 aaKnown RBP8.85□□□□□ -0.99
SCFD1-208ENST00000553278 BACH1O14867 736 aa8.85□□□□□ -0.99
SCFD1-208ENST00000553278 P4HBP07237 508 aaKnown RBP8.85□□□□□ -0.99
SCFD1-208ENST00000553278 ERCC5P28715 1186 aaPredicted RBP8.85□□□□□ -0.99
SCFD1-208ENST00000553278 TRIM52Q96A61 297 aa8.85□□□□□ -0.99
SCFD1-208ENST00000553278 RAB15P59190 212 aa8.84□□□□□ -0.99
SCFD1-208ENST00000553278 TMC7Q7Z402 723 aa8.84□□□□□ -0.99
SCFD1-208ENST00000553278 SCG3Q8WXD2 468 aaKnown RBP8.84□□□□□ -0.99
SCFD1-208ENST00000553278 UBXN4Q92575 508 aa8.84□□□□□ -0.99
SCFD1-208ENST00000553278 CITED4Q96RK1 184 aa8.84□□□□□ -0.99
SCFD1-208ENST00000553278 BACH2Q9BYV9 841 aa8.84□□□□□ -0.99
SCFD1-208ENST00000553278 BRPF3Q9ULD4 1205 aa8.84□□□□□ -0.99
SCFD1-208ENST00000553278 CDK11BP21127 795 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms