RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.94■□□□□ 0.94
VPS29-209ENST00000551655 ZNF692Q9BU19 519 aaPredicted RBP20.94■□□□□ 0.94
VPS29-209ENST00000551655 KTN1Q86UP2 1357 aaKnown RBP20.94■□□□□ 0.94
VPS29-209ENST00000551655 COL13A1Q5TAT6 717 aaPredicted RBP20.93■□□□□ 0.94
VPS29-209ENST00000551655 CD2APQ9Y5K6 639 aa20.93■□□□□ 0.94
VPS29-209ENST00000551655 EVC2Q86UK5 1308 aa20.93■□□□□ 0.94
VPS29-209ENST00000551655 ANKRD36BQ8N2N9 1353 aa20.93■□□□□ 0.94
VPS29-209ENST00000551655 APLP1P51693 650 aa20.92■□□□□ 0.94
VPS29-209ENST00000551655 NME9Q86XW9 330 aa20.92■□□□□ 0.94
VPS29-209ENST00000551655 USP54Q70EL1 1684 aa20.92■□□□□ 0.94
VPS29-209ENST00000551655 C5P01031 1676 aa20.91■□□□□ 0.94
VPS29-209ENST00000551655 IGSF1Q8N6C5 1336 aa20.9■□□□□ 0.94
VPS29-209ENST00000551655 LTV1Q96GA3 475 aaPredicted RBP20.89■□□□□ 0.93
VPS29-209ENST00000551655 USP31Q70CQ4 1352 aa20.88■□□□□ 0.93
VPS29-209ENST00000551655 WDR90Q96KV7 1748 aa20.88■□□□□ 0.93
VPS29-209ENST00000551655 HTRA3P83110 453 aa20.88■□□□□ 0.93
VPS29-209ENST00000551655 RGPD2P0DJD1 1756 aa20.87■□□□□ 0.93
VPS29-209ENST00000551655 SMIM5Q71RC9 77 aa20.86■□□□□ 0.93
VPS29-209ENST00000551655 FAM208AQ9UK61 1670 aaKnown RBP20.86■□□□□ 0.93
VPS29-209ENST00000551655 TAF1LQ8IZX4 1826 aa20.85■□□□□ 0.93
VPS29-209ENST00000551655 TOGARAM1Q9Y4F4 1720 aa20.85■□□□□ 0.93
VPS29-209ENST00000551655 AMIGO3Q86WK7 504 aa20.85■□□□□ 0.93
VPS29-209ENST00000551655 USP47Q96K76 1375 aa20.84■□□□□ 0.93
VPS29-209ENST00000551655 MEGF6O75095 1541 aa20.83■□□□□ 0.93
VPS29-209ENST00000551655 SBNO2Q9Y2G9 1366 aa20.83■□□□□ 0.92
VPS29-209ENST00000551655 CICQ96RK0 1608 aaPredicted RBP20.82■□□□□ 0.92
VPS29-209ENST00000551655 CD163L1Q9NR16 1453 aa20.82■□□□□ 0.92
VPS29-209ENST00000551655 PCNTO95613 3336 aa20.81■□□□□ 0.92
VPS29-209ENST00000551655 TOMM70O94826 608 aa20.81■□□□□ 0.92
VPS29-209ENST00000551655 NMRK2Q9NPI5 230 aa20.81■□□□□ 0.92
VPS29-209ENST00000551655 C4BP0C0L5 1744 aa20.79■□□□□ 0.92
VPS29-209ENST00000551655 TNS4Q8IZW8 715 aa20.79■□□□□ 0.92
VPS29-209ENST00000551655 ZCRB1Q8TBF4 217 aaKnown RBP20.79■□□□□ 0.92
VPS29-209ENST00000551655 PHF14O94880 888 aa20.78■□□□□ 0.92
VPS29-209ENST00000551655 IP6K1Q92551 441 aa20.78■□□□□ 0.92
VPS29-209ENST00000551655 UBR3Q6ZT12 1888 aa20.77■□□□□ 0.92
VPS29-209ENST00000551655 KLRG1Q96E93 195 aa20.77■□□□□ 0.92
VPS29-209ENST00000551655 KIAA1551Q9HCM1 1747 aa20.75■□□□□ 0.91
VPS29-209ENST00000551655 PALLDQ8WX93 1383 aa20.75■□□□□ 0.91
VPS29-209ENST00000551655 N4BP2Q86UW6 1770 aaPredicted RBP20.75■□□□□ 0.91
VPS29-209ENST00000551655 PRELPP51888 382 aa20.75■□□□□ 0.91
VPS29-209ENST00000551655 FLAD1Q8NFF5 587 aa20.75■□□□□ 0.91
VPS29-209ENST00000551655 FBLN1P23142 703 aa20.74■□□□□ 0.91
VPS29-209ENST00000551655 JMYQ8N9B5 988 aa20.74■□□□□ 0.91
VPS29-209ENST00000551655 USHBP1Q8N6Y0 703 aa20.73■□□□□ 0.91
VPS29-209ENST00000551655 AK7Q96M32 723 aa20.73■□□□□ 0.91
VPS29-209ENST00000551655 TMC1Q8TDI8 760 aa20.72■□□□□ 0.91
VPS29-209ENST00000551655 PXDNLA1KZ92 1463 aa20.72■□□□□ 0.91
VPS29-209ENST00000551655 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.71■□□□□ 0.91
VPS29-209ENST00000551655 EDC4Q6P2E9 1401 aaKnown RBP20.7■□□□□ 0.9
VPS29-209ENST00000551655 HOXC9P31274 260 aa20.7■□□□□ 0.9
VPS29-209ENST00000551655 SLC12A5Q9H2X9 1139 aa20.7■□□□□ 0.9
VPS29-209ENST00000551655 MAP3K19Q56UN5 1328 aa20.7■□□□□ 0.9
VPS29-209ENST00000551655 MPRIPQ6WCQ1 1025 aa20.69■□□□□ 0.9
VPS29-209ENST00000551655 RBM46Q8TBY0 533 aaKnown RBP20.69■□□□□ 0.9
VPS29-209ENST00000551655 BCS1LQ9Y276 419 aa20.69■□□□□ 0.9
VPS29-209ENST00000551655 ITGB4P16144 1822 aa20.69■□□□□ 0.9
VPS29-209ENST00000551655 L3MBTL2Q969R5 705 aa20.68■□□□□ 0.9
VPS29-209ENST00000551655 KIF13BQ9NQT8 1826 aa20.68■□□□□ 0.9
VPS29-209ENST00000551655 ROCK2O75116 1388 aaKnown RBP20.68■□□□□ 0.9
VPS29-209ENST00000551655 NBPF6Q5VWK0 638 aa20.67■□□□□ 0.9
VPS29-209ENST00000551655 ARHGAP27Q6ZUM4 889 aa20.67■□□□□ 0.9
VPS29-209ENST00000551655 HDGFL2Q7Z4V5 671 aaPredicted RBP20.67■□□□□ 0.9
VPS29-209ENST00000551655 NBPF4Q96M43 638 aa20.67■□□□□ 0.9
VPS29-209ENST00000551655 A0A1W2PP64 1363 aa20.67■□□□□ 0.9
VPS29-209ENST00000551655 A0A0G2JLW4 131 aa20.66■□□□□ 0.9
VPS29-209ENST00000551655 AMPHP49418 695 aa20.65■□□□□ 0.9
VPS29-209ENST00000551655 MAP2P11137 1827 aaKnown RBP20.64■□□□□ 0.9
VPS29-209ENST00000551655 KCPQ6ZWJ8 1503 aa20.64■□□□□ 0.9
VPS29-209ENST00000551655 MMP10P09238 476 aa20.64■□□□□ 0.89
VPS29-209ENST00000551655 C16orf71Q8IYS4 520 aaPredicted RBP20.64■□□□□ 0.89
VPS29-209ENST00000551655 LINC00116Q8NCU8 138 aa20.64■□□□□ 0.89
VPS29-209ENST00000551655 PKD1L3Q7Z443 1732 aa20.64■□□□□ 0.89
VPS29-209ENST00000551655 C9orf131Q5VYM1 1079 aa20.62■□□□□ 0.89
VPS29-209ENST00000551655 BRCA1P38398 1863 aaKnown RBP20.62■□□□□ 0.89
VPS29-209ENST00000551655 SSFA2P28290 1259 aa20.61■□□□□ 0.89
VPS29-209ENST00000551655 RAPGEF4Q8WZA2 1011 aa20.61■□□□□ 0.89
VPS29-209ENST00000551655 CYP27B1O15528 508 aa20.6■□□□□ 0.89
VPS29-209ENST00000551655 FSTL1Q12841 308 aa20.6■□□□□ 0.89
VPS29-209ENST00000551655 NSD3Q9BZ95 1437 aa20.6■□□□□ 0.89
VPS29-209ENST00000551655 PCDH11XQ9BZA7 1347 aa20.59■□□□□ 0.89
VPS29-209ENST00000551655 PCDH11YQ9BZA8 1340 aa20.59■□□□□ 0.89
VPS29-209ENST00000551655 GNPATO15228 680 aa20.59■□□□□ 0.89
VPS29-209ENST00000551655 FCHSD2O94868 740 aa20.59■□□□□ 0.89
VPS29-209ENST00000551655 HSPA1AP0DMV8 641 aaKnown RBP20.59■□□□□ 0.89
VPS29-209ENST00000551655 HSPA1BP0DMV9 641 aaKnown RBP20.59■□□□□ 0.89
VPS29-209ENST00000551655 DPEP1P16444 411 aa20.59■□□□□ 0.89
VPS29-209ENST00000551655 RRS1Q15050 365 aaKnown RBP20.59■□□□□ 0.89
VPS29-209ENST00000551655 PIGBQ92521 554 aa20.59■□□□□ 0.89
VPS29-209ENST00000551655 C10orf71Q711Q0 1435 aa20.59■□□□□ 0.89
VPS29-209ENST00000551655 TATP17735 454 aaPredicted RBP20.58■□□□□ 0.89
VPS29-209ENST00000551655 RRAGCQ9HB90 399 aa20.58■□□□□ 0.89
VPS29-209ENST00000551655 CGNL1Q0VF96 1302 aa20.57■□□□□ 0.88
VPS29-209ENST00000551655 ITPK1Q13572 414 aa20.57■□□□□ 0.88
VPS29-209ENST00000551655 SMARCC1Q92922 1105 aaPredicted RBP20.57■□□□□ 0.88
VPS29-209ENST00000551655 COG3Q96JB2 828 aa20.57■□□□□ 0.88
VPS29-209ENST00000551655 TERF2IPQ9NYB0 399 aa20.57■□□□□ 0.88
VPS29-209ENST00000551655 LOC102724428A0A0B4J2F2 783 aa20.56■□□□□ 0.88
VPS29-209ENST00000551655 SIK1P57059 783 aa20.56■□□□□ 0.88
VPS29-209ENST00000551655 TGFB2P61812 414 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms