RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 RGPD1P0DJD0 1748 aa28.6■■■□□ 2.17
NEK3-202ENST00000550841 HMOX1P09601 288 aa28.6■■■□□ 2.17
NEK3-202ENST00000550841 ZCRB1Q8TBF4 217 aaKnown RBP28.6■■■□□ 2.17
NEK3-202ENST00000550841 PNNQ9H307 717 aaKnown RBP28.6■■■□□ 2.17
NEK3-202ENST00000550841 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.6■■■□□ 2.17
NEK3-202ENST00000550841 FCHSD2O94868 740 aa28.59■■■□□ 2.17
NEK3-202ENST00000550841 AEBP1Q8IUX7 1158 aa28.59■■■□□ 2.17
NEK3-202ENST00000550841 SPG7Q9UQ90 795 aa28.59■■■□□ 2.17
NEK3-202ENST00000550841 PARP4Q9UKK3 1724 aaKnown RBP28.59■■■□□ 2.17
NEK3-202ENST00000550841 WNK3Q9BYP7 1800 aa28.59■■■□□ 2.17
NEK3-202ENST00000550841 BRWD3Q6RI45 1802 aa28.58■■■□□ 2.17
NEK3-202ENST00000550841 WDR43Q15061 677 aaKnown RBP eCLIP28.58■■■□□ 2.17
NEK3-202ENST00000550841 OVOS2A0A0G2JMS6 1433 aa28.58■■■□□ 2.17
NEK3-202ENST00000550841 EP400Q96L91 3159 aa28.58■■■□□ 2.17
NEK3-202ENST00000550841 AMOTQ4VCS5 1084 aa28.57■■■□□ 2.16
NEK3-202ENST00000550841 PLEKHO1Q53GL0 409 aaPredicted RBP28.57■■■□□ 2.16
NEK3-202ENST00000550841 MEGF6O75095 1541 aa28.57■■■□□ 2.16
NEK3-202ENST00000550841 MRS2Q9HD23 443 aa28.56■■■□□ 2.16
NEK3-202ENST00000550841 TNS2Q63HR2 1409 aa28.54■■■□□ 2.16
NEK3-202ENST00000550841 NEFMP07197 916 aa28.53■■■□□ 2.16
NEK3-202ENST00000550841 BAG6P46379 1132 aa28.52■■■□□ 2.16
NEK3-202ENST00000550841 DDX54Q8TDD1 881 aaKnown RBP28.52■■■□□ 2.16
NEK3-202ENST00000550841 RSPH6AQ9H0K4 717 aa28.52■■■□□ 2.16
NEK3-202ENST00000550841 PCDH11XQ9BZA7 1347 aa28.51■■■□□ 2.15
NEK3-202ENST00000550841 PCDH11YQ9BZA8 1340 aa28.51■■■□□ 2.15
NEK3-202ENST00000550841 LRRC37A3O60309 1634 aa28.51■■■□□ 2.15
NEK3-202ENST00000550841 CCER2I3L3R5 266 aa28.5■■■□□ 2.15
NEK3-202ENST00000550841 PRKAR2BP31323 418 aa28.5■■■□□ 2.15
NEK3-202ENST00000550841 CCDC184Q52MB2 194 aa28.5■■■□□ 2.15
NEK3-202ENST00000550841 FAM196AQ6ZSG2 479 aa28.5■■■□□ 2.15
NEK3-202ENST00000550841 MARCH10Q8NA82 808 aaPredicted RBP28.49■■■□□ 2.15
NEK3-202ENST00000550841 IFNL2Q8IZJ0 200 aa28.47■■■□□ 2.15
NEK3-202ENST00000550841 ADAMTS8Q9UP79 889 aa28.46■■■□□ 2.15
NEK3-202ENST00000550841 C1orf141Q5JVX7 400 aa28.45■■■□□ 2.14
NEK3-202ENST00000550841 GAS2L2Q8NHY3 880 aa28.45■■■□□ 2.14
NEK3-202ENST00000550841 PNISRQ8TF01 805 aaKnown RBP28.45■■■□□ 2.14
NEK3-202ENST00000550841 HSP90AB1P08238 724 aaKnown RBP28.44■■■□□ 2.14
NEK3-202ENST00000550841 FAM182BQ5T319 152 aa28.44■■■□□ 2.14
NEK3-202ENST00000550841 ZNF530Q6P9A1 599 aaPredicted RBP28.44■■■□□ 2.14
NEK3-202ENST00000550841 MIER1Q8N108 512 aa28.44■■■□□ 2.14
NEK3-202ENST00000550841 PKD1L3Q7Z443 1732 aa28.43■■■□□ 2.14
NEK3-202ENST00000550841 CYP27B1O15528 508 aa28.43■■■□□ 2.14
NEK3-202ENST00000550841 BCL9O00512 1426 aa28.42■■■□□ 2.14
NEK3-202ENST00000550841 MAPK8IP3Q9UPT6 1336 aa28.42■■■□□ 2.14
NEK3-202ENST00000550841 PHKG2P15735 406 aa28.41■■■□□ 2.14
NEK3-202ENST00000550841 NKX1-1Q15270 411 aaPredicted RBP28.41■■■□□ 2.14
NEK3-202ENST00000550841 MTHFSDQ2M296 383 aaKnown RBP28.41■■■□□ 2.14
NEK3-202ENST00000550841 AKAP4Q5JQC9 854 aa28.41■■■□□ 2.14
NEK3-202ENST00000550841 PHACTR3Q96KR7 559 aa28.41■■■□□ 2.14
NEK3-202ENST00000550841 PLEKHF1Q96S99 279 aa28.41■■■□□ 2.14
NEK3-202ENST00000550841 EN1Q05925 392 aaPredicted RBP28.39■■■□□ 2.14
NEK3-202ENST00000550841 RUNDC1Q96C34 613 aa28.39■■■□□ 2.14
NEK3-202ENST00000550841 SHANK3Q9BYB0 1731 aa28.37■■■□□ 2.13
NEK3-202ENST00000550841 DCAF5Q96JK2 942 aa28.36■■■□□ 2.13
NEK3-202ENST00000550841 SRCAPQ6ZRS2 3230 aa28.35■■■□□ 2.13
NEK3-202ENST00000550841 PSDA5PKW4 1024 aaPredicted RBP28.34■■■□□ 2.13
NEK3-202ENST00000550841 KAT6BQ8WYB5 2073 aa28.34■■■□□ 2.13
NEK3-202ENST00000550841 GNAT3A8MTJ3 354 aa28.33■■■□□ 2.13
NEK3-202ENST00000550841 CCDC146Q8IYE0 955 aa28.33■■■□□ 2.13
NEK3-202ENST00000550841 FAM9BQ8IZU0 186 aa28.33■■■□□ 2.13
NEK3-202ENST00000550841 NFE2L2Q16236 605 aa28.32■■■□□ 2.12
NEK3-202ENST00000550841 HTATSF1O43719 755 aaKnown RBP28.31■■■□□ 2.12
NEK3-202ENST00000550841 BCL11BQ9C0K0 894 aaPredicted RBP28.31■■■□□ 2.12
NEK3-202ENST00000550841 ERVV-2B6SEH9 535 aa28.3■■■□□ 2.12
NEK3-202ENST00000550841 TRIM37O94972 964 aa28.3■■■□□ 2.12
NEK3-202ENST00000550841 RTF1Q92541 710 aaKnown RBP28.3■■■□□ 2.12
NEK3-202ENST00000550841 ACSBG1Q96GR2 724 aa28.3■■■□□ 2.12
NEK3-202ENST00000550841 MAP3K5Q99683 1374 aa28.29■■■□□ 2.12
NEK3-202ENST00000550841 PRIM1P49642 420 aaKnown RBP28.29■■■□□ 2.12
NEK3-202ENST00000550841 MPRIPQ6WCQ1 1025 aa28.29■■■□□ 2.12
NEK3-202ENST00000550841 TMPOP42166 694 aaKnown RBP28.27■■■□□ 2.12
NEK3-202ENST00000550841 EZH2Q15910 746 aaKnown RBP28.27■■■□□ 2.12
NEK3-202ENST00000550841 SYTL4Q96C24 671 aaPredicted RBP28.27■■■□□ 2.12
NEK3-202ENST00000550841 RNMTO43148 476 aaKnown RBP28.26■■■□□ 2.11
NEK3-202ENST00000550841 SBF2Q86WG5 1849 aa28.25■■■□□ 2.11
NEK3-202ENST00000550841 KCNQ2O43526 872 aa28.25■■■□□ 2.11
NEK3-202ENST00000550841 APBA3O96018 575 aa28.25■■■□□ 2.11
NEK3-202ENST00000550841 RIPK4P57078 832 aa28.25■■■□□ 2.11
NEK3-202ENST00000550841 LMOD3Q0VAK6 560 aa28.25■■■□□ 2.11
NEK3-202ENST00000550841 CABP4P57796 275 aa28.24■■■□□ 2.11
NEK3-202ENST00000550841 APAF1O14727 1248 aa28.23■■■□□ 2.11
NEK3-202ENST00000550841 R3HDM1Q15032 1099 aaKnown RBP28.23■■■□□ 2.11
NEK3-202ENST00000550841 LGR6Q9HBX8 967 aa28.23■■■□□ 2.11
NEK3-202ENST00000550841 TMOD3Q9NYL9 352 aa28.23■■■□□ 2.11
NEK3-202ENST00000550841 IL17REQ8NFR9 667 aa28.22■■■□□ 2.11
NEK3-202ENST00000550841 CAMKK2Q96RR4 588 aa28.22■■■□□ 2.11
NEK3-202ENST00000550841 KDM6AO15550 1401 aaPredicted RBP28.21■■■□□ 2.11
NEK3-202ENST00000550841 NEUROD2Q15784 382 aa28.2■■■□□ 2.1
NEK3-202ENST00000550841 NHSQ6T4R5 1651 aa28.19■■■□□ 2.1
NEK3-202ENST00000550841 DOT1LQ8TEK3 1739 aa28.19■■■□□ 2.1
NEK3-202ENST00000550841 TEFQ10587 303 aa28.19■■■□□ 2.1
NEK3-202ENST00000550841 SLC52A2Q9HAB3 445 aa28.19■■■□□ 2.1
NEK3-202ENST00000550841 NCBP3Q53F19 620 aaKnown RBP28.18■■■□□ 2.1
NEK3-202ENST00000550841 NFATC2IPQ8NCF5 419 aa28.18■■■□□ 2.1
NEK3-202ENST00000550841 PIGBQ92521 554 aa28.18■■■□□ 2.1
NEK3-202ENST00000550841 RRP7AQ9Y3A4 280 aaKnown RBP28.18■■■□□ 2.1
NEK3-202ENST00000550841 SCN11AQ9UI33 1791 aa28.18■■■□□ 2.1
NEK3-202ENST00000550841 CEMIPQ8WUJ3 1361 aa28.16■■■□□ 2.1
NEK3-202ENST00000550841 PLSCR1O15162 318 aa28.16■■■□□ 2.1
NEK3-202ENST00000550841 MCM10Q7L590 875 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms