RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 KCTD17Q8N5Z5 321 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 SBF2Q86WG5 1849 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 ORAI2Q96SN7 254 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 MAP7D2Q96T17 732 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 PDCL3Q9H2J4 239 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 PRDM10Q9NQV6 1147 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 RCAN3Q9UKA8 241 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 BRWD3Q6RI45 1802 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 TNS1Q9HBL0 1735 aaKnown RBP6.73□□□□□ -1.33
USP28-213ENST00000544967 BCL9LQ86UU0 1499 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 ACEP12821 1306 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 PAPPAQ13219 1627 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 BCL9O00512 1426 aa6.73□□□□□ -1.33
USP28-213ENST00000544967 SIPA1L3O60292 1781 aaPredicted RBP6.73□□□□□ -1.33
USP28-213ENST00000544967 HSPA1LP34931 641 aa6.72□□□□□ -1.33
USP28-213ENST00000544967 LRRC59Q96AG4 307 aaKnown RBP6.72□□□□□ -1.33
USP28-213ENST00000544967 PNNQ9H307 717 aaKnown RBP6.72□□□□□ -1.33
USP28-213ENST00000544967 RRAGDQ9NQL2 400 aaPredicted RBP6.72□□□□□ -1.33
USP28-213ENST00000544967 COL5A2P05997 1499 aaPredicted RBP6.72□□□□□ -1.33
USP28-213ENST00000544967 DISP2A7MBM2 1401 aa6.72□□□□□ -1.33
USP28-213ENST00000544967 MYBBP1AQ9BQG0 1328 aaKnown RBP6.72□□□□□ -1.33
USP28-213ENST00000544967 PER1O15534 1290 aaPredicted RBP6.72□□□□□ -1.33
USP28-213ENST00000544967 RBM25P49756 843 aaKnown RBP6.72□□□□□ -1.33
USP28-213ENST00000544967 FAM177A1Q8N128 213 aaPredicted RBP6.71□□□□□ -1.33
USP28-213ENST00000544967 QSER1Q2KHR3 1735 aa6.71□□□□□ -1.33
USP28-213ENST00000544967 TTC21BQ7Z4L5 1316 aa6.71□□□□□ -1.34
USP28-213ENST00000544967 PSME1Q06323 249 aa6.71□□□□□ -1.34
USP28-213ENST00000544967 NHSQ6T4R5 1651 aa6.71□□□□□ -1.34
USP28-213ENST00000544967 COL24A1Q17RW2 1714 aa6.71□□□□□ -1.34
USP28-213ENST00000544967 RREB1Q92766 1687 aa6.71□□□□□ -1.34
USP28-213ENST00000544967 EXOC6Q8TAG9 804 aa6.7□□□□□ -1.34
USP28-213ENST00000544967 BBXQ8WY36 941 aaPredicted RBP6.7□□□□□ -1.34
USP28-213ENST00000544967 NSD3Q9BZ95 1437 aa6.7□□□□□ -1.34
USP28-213ENST00000544967 FNBP4Q8N3X1 1017 aaPredicted RBP6.7□□□□□ -1.34
USP28-213ENST00000544967 CABP2Q9NPB3 220 aa6.7□□□□□ -1.34
USP28-213ENST00000544967 PARD3Q8TEW0 1356 aa6.7□□□□□ -1.34
USP28-213ENST00000544967 BECN1Q14457 450 aa6.7□□□□□ -1.34
USP28-213ENST00000544967 C8orf34Q49A92 452 aa6.7□□□□□ -1.34
USP28-213ENST00000544967 MTERF4Q7Z6M4 381 aaKnown RBP6.7□□□□□ -1.34
USP28-213ENST00000544967 PRDM16Q9HAZ2 1276 aa6.7□□□□□ -1.34
USP28-213ENST00000544967 RBM33Q96EV2 1170 aaKnown RBP6.69□□□□□ -1.34
USP28-213ENST00000544967 CARD14Q9BXL6 1004 aa6.69□□□□□ -1.34
USP28-213ENST00000544967 KRT28Q7Z3Y7 464 aa6.69□□□□□ -1.34
USP28-213ENST00000544967 CLSTN1O94985 981 aa6.69□□□□□ -1.34
USP28-213ENST00000544967 PSMD1Q99460 953 aa6.69□□□□□ -1.34
USP28-213ENST00000544967 CABP1Q9NZU7 370 aa6.69□□□□□ -1.34
USP28-213ENST00000544967 TOGARAM1Q9Y4F4 1720 aa6.68□□□□□ -1.34
USP28-213ENST00000544967 FRAT2O75474 233 aaPredicted RBP6.68□□□□□ -1.34
USP28-213ENST00000544967 PTMSP20962 102 aa6.68□□□□□ -1.34
USP28-213ENST00000544967 MRE11P49959 708 aa6.68□□□□□ -1.34
USP28-213ENST00000544967 ESCO1Q5FWF5 840 aa6.68□□□□□ -1.34
USP28-213ENST00000544967 PIAS4Q8N2W9 510 aaPredicted RBP6.68□□□□□ -1.34
USP28-213ENST00000544967 TERF2IPQ9NYB0 399 aa6.68□□□□□ -1.34
USP28-213ENST00000544967 LY75O60449 1722 aa6.68□□□□□ -1.34
USP28-213ENST00000544967 UBR2Q8IWV8 1755 aa6.68□□□□□ -1.34
USP28-213ENST00000544967 SCN11AQ9UI33 1791 aa6.68□□□□□ -1.34
USP28-213ENST00000544967 CGNL1Q0VF96 1302 aa6.67□□□□□ -1.34
USP28-213ENST00000544967 GOLGA6L3A6NEY3 463 aa6.67□□□□□ -1.34
USP28-213ENST00000544967 ZNF526Q8TF50 670 aaPredicted RBP6.67□□□□□ -1.34
USP28-213ENST00000544967 MRC1P22897 1456 aa6.67□□□□□ -1.34
USP28-213ENST00000544967 ONECUT3O60422 494 aaPredicted RBP6.66□□□□□ -1.34
USP28-213ENST00000544967 CNPY4Q8N129 248 aa6.66□□□□□ -1.34
USP28-213ENST00000544967 SRPK2P78362 688 aaKnown RBP6.66□□□□□ -1.34
USP28-213ENST00000544967 NLRP13Q86W25 1043 aa6.66□□□□□ -1.34
USP28-213ENST00000544967 TMC1Q8TDI8 760 aa6.66□□□□□ -1.34
USP28-213ENST00000544967 ANTXR1Q9H6X2 564 aa6.66□□□□□ -1.34
USP28-213ENST00000544967 MAPK8IP3Q9UPT6 1336 aa6.66□□□□□ -1.34
USP28-213ENST00000544967 FYB1O15117 783 aa6.65□□□□□ -1.34
USP28-213ENST00000544967 HDGFL2Q7Z4V5 671 aaPredicted RBP6.65□□□□□ -1.34
USP28-213ENST00000544967 SMAP1Q8IYB5 467 aaPredicted RBP6.65□□□□□ -1.34
USP28-213ENST00000544967 SLC12A5Q9H2X9 1139 aa6.65□□□□□ -1.34
USP28-213ENST00000544967 PRDM4Q9UKN5 801 aa6.65□□□□□ -1.34
USP28-213ENST00000544967 NCLP19338 710 aaKnown RBP6.65□□□□□ -1.35
USP28-213ENST00000544967 ARHGEF25Q86VW2 580 aa6.65□□□□□ -1.35
USP28-213ENST00000544967 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.65□□□□□ -1.35
USP28-213ENST00000544967 KCNH5Q8NCM2 988 aa6.65□□□□□ -1.35
USP28-213ENST00000544967 KDRP35968 1356 aa6.65□□□□□ -1.35
USP28-213ENST00000544967 CRB1P82279 1406 aa6.65□□□□□ -1.35
USP28-213ENST00000544967 FOXO3O43524 673 aa6.64□□□□□ -1.35
USP28-213ENST00000544967 RGS17Q9UGC6 210 aaPredicted RBP6.64□□□□□ -1.35
USP28-213ENST00000544967 ITGB4P16144 1822 aa6.64□□□□□ -1.35
USP28-213ENST00000544967 IBTKQ9P2D0 1353 aaPredicted RBP6.64□□□□□ -1.35
USP28-213ENST00000544967 XRCC6P12956 609 aaKnown RBP eCLIP6.64□□□□□ -1.35
USP28-213ENST00000544967 SAFB2Q14151 953 aaKnown RBP eCLIP6.64□□□□□ -1.35
USP28-213ENST00000544967 HS1BP3Q53T59 392 aa6.64□□□□□ -1.35
USP28-213ENST00000544967 UTP14CQ5TAP6 766 aaKnown RBP6.64□□□□□ -1.35
USP28-213ENST00000544967 NGEFQ8N5V2 710 aa6.64□□□□□ -1.35
USP28-213ENST00000544967 DLG5Q8TDM6 1919 aa6.64□□□□□ -1.35
USP28-213ENST00000544967 OVOS2A0A0G2JMS6 1433 aa6.64□□□□□ -1.35
USP28-213ENST00000544967 DOT1LQ8TEK3 1739 aa6.64□□□□□ -1.35
USP28-213ENST00000544967 RGS12O14924 1447 aa6.63□□□□□ -1.35
USP28-213ENST00000544967 ESPNB1AK53 854 aa6.63□□□□□ -1.35
USP28-213ENST00000544967 COL5A3P25940 1745 aaPredicted RBP6.63□□□□□ -1.35
USP28-213ENST00000544967 TNS2Q63HR2 1409 aa6.63□□□□□ -1.35
USP28-213ENST00000544967 FLT4P35916 1363 aa6.63□□□□□ -1.35
USP28-213ENST00000544967 DDX17Q92841 729 aaKnown RBP6.63□□□□□ -1.35
USP28-213ENST00000544967 KDM3BQ7LBC6 1761 aa6.63□□□□□ -1.35
USP28-213ENST00000544967 NUP188Q5SRE5 1749 aa6.63□□□□□ -1.35
USP28-213ENST00000544967 KIAA0232Q92628 1395 aa6.63□□□□□ -1.35
USP28-213ENST00000544967 DDX11L8A8MPP1 907 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms