RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 MCM10Q7L590 875 aa39.54■■■■□ 3.92
CCM2-219ENST00000544363 COL14A1Q05707 1796 aaKnown RBP39.53■■■■□ 3.92
CCM2-219ENST00000544363 ZNF853P0CG23 659 aa39.53■■■■□ 3.92
CCM2-219ENST00000544363 MAP3K5Q99683 1374 aa39.53■■■■□ 3.92
CCM2-219ENST00000544363 RAPGEF4Q8WZA2 1011 aa39.52■■■■□ 3.92
CCM2-219ENST00000544363 CFAP44Q96MT7 982 aa39.51■■■■□ 3.92
CCM2-219ENST00000544363 LAS1LQ9Y4W2 734 aaKnown RBP39.51■■■■□ 3.92
CCM2-219ENST00000544363 EVA1CP58658 441 aa39.49■■■■□ 3.91
CCM2-219ENST00000544363 TOM1L2Q6ZVM7 507 aa39.49■■■■□ 3.91
CCM2-219ENST00000544363 PLEKHG2Q9H7P9 1386 aa39.48■■■■□ 3.91
CCM2-219ENST00000544363 TATP17735 454 aaPredicted RBP39.47■■■■□ 3.91
CCM2-219ENST00000544363 RRP1P56182 461 aaKnown RBP39.47■■■■□ 3.91
CCM2-219ENST00000544363 STRN4Q9NRL3 753 aa39.47■■■■□ 3.91
CCM2-219ENST00000544363 BTG4Q9NY30 223 aa39.47■■■■□ 3.91
CCM2-219ENST00000544363 CRB1P82279 1406 aa39.46■■■■□ 3.91
CCM2-219ENST00000544363 ZNF530Q6P9A1 599 aaPredicted RBP39.46■■■■□ 3.91
CCM2-219ENST00000544363 CT47B1P0C2W7 299 aaPredicted RBP39.45■■■■□ 3.91
CCM2-219ENST00000544363 EXOSC9Q06265 439 aaKnown RBP39.45■■■■□ 3.91
CCM2-219ENST00000544363 CARD10Q9BWT7 1032 aa39.45■■■■□ 3.91
CCM2-219ENST00000544363 AKAP4Q5JQC9 854 aa39.44■■■■□ 3.9
CCM2-219ENST00000544363 MEGF6O75095 1541 aa39.44■■■■□ 3.9
CCM2-219ENST00000544363 MBIPQ9NS73 344 aa39.43■■■■□ 3.9
CCM2-219ENST00000544363 JCADQ9P266 1359 aa39.43■■■■□ 3.9
CCM2-219ENST00000544363 IRX6P78412 446 aaPredicted RBP39.43■■■■□ 3.9
CCM2-219ENST00000544363 LARP1Q6PKG0 1096 aaKnown RBP39.43■■■■□ 3.9
CCM2-219ENST00000544363 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP39.42■■■■□ 3.9
CCM2-219ENST00000544363 IL17REQ8NFR9 667 aa39.41■■■■□ 3.9
CCM2-219ENST00000544363 LRRC37A3O60309 1634 aa39.41■■■■□ 3.9
CCM2-219ENST00000544363 ADAMTS2O95450 1211 aa39.4■■■■□ 3.9
CCM2-219ENST00000544363 NUTM2BA6NNL0 878 aaPredicted RBP39.4■■■■□ 3.9
CCM2-219ENST00000544363 NUTM2EB1AL46 878 aaPredicted RBP39.4■■■■□ 3.9
CCM2-219ENST00000544363 CHL1O00533 1208 aa39.4■■■■□ 3.9
CCM2-219ENST00000544363 C1orf141Q5JVX7 400 aa39.4■■■■□ 3.9
CCM2-219ENST00000544363 NUTM2AQ8IVF1 878 aaPredicted RBP39.4■■■■□ 3.9
CCM2-219ENST00000544363 SPG7Q9UQ90 795 aa39.38■■■■□ 3.89
CCM2-219ENST00000544363 CEMIPQ8WUJ3 1361 aa39.35■■■■□ 3.89
CCM2-219ENST00000544363 RARSP54136 660 aaKnown RBP39.35■■■■□ 3.89
CCM2-219ENST00000544363 OVOS2A0A0G2JMS6 1433 aa39.33■■■■□ 3.89
CCM2-219ENST00000544363 PLCH1Q4KWH8 1693 aa39.33■■■■□ 3.89
CCM2-219ENST00000544363 PKD1L3Q7Z443 1732 aa39.33■■■■□ 3.89
CCM2-219ENST00000544363 BCAR3O75815 825 aa39.32■■■■□ 3.89
CCM2-219ENST00000544363 PARP4Q9UKK3 1724 aaKnown RBP39.32■■■■□ 3.88
CCM2-219ENST00000544363 ERICH6BQ5W0A0 696 aa39.31■■■■□ 3.88
CCM2-219ENST00000544363 GOLGA6L2Q8N9W4 650 aaPredicted RBP39.3■■■■□ 3.88
CCM2-219ENST00000544363 LGR6Q9HBX8 967 aa39.3■■■■□ 3.88
CCM2-219ENST00000544363 PLIN1O60240 522 aa39.29■■■■□ 3.88
CCM2-219ENST00000544363 IL2RBP14784 551 aa39.29■■■■□ 3.88
CCM2-219ENST00000544363 MPRIPQ6WCQ1 1025 aa39.29■■■■□ 3.88
CCM2-219ENST00000544363 RNMTO43148 476 aaKnown RBP39.28■■■■□ 3.88
CCM2-219ENST00000544363 TAF7Q15545 349 aaPredicted RBP39.28■■■■□ 3.88
CCM2-219ENST00000544363 BABAM1Q9NWV8 329 aa39.28■■■■□ 3.88
CCM2-219ENST00000544363 HSPA1LP34931 641 aa39.27■■■■□ 3.88
CCM2-219ENST00000544363 TSPYL4Q9UJ04 414 aa39.27■■■■□ 3.88
CCM2-219ENST00000544363 PHKG2P15735 406 aa39.26■■■■□ 3.88
CCM2-219ENST00000544363 IFNL2Q8IZJ0 200 aa39.26■■■■□ 3.88
CCM2-219ENST00000544363 SPATA31A6Q5VVP1 1343 aa39.26■■■■□ 3.88
CCM2-219ENST00000544363 ZNF428Q96B54 188 aa39.25■■■■□ 3.87
CCM2-219ENST00000544363 MIS18AQ9NYP9 233 aa39.25■■■■□ 3.87
CCM2-219ENST00000544363 NRAPQ86VF7 1730 aa39.24■■■■□ 3.87
CCM2-219ENST00000544363 ADAMTS7Q9UKP4 1686 aa39.23■■■■□ 3.87
CCM2-219ENST00000544363 VAMP4O75379 141 aa39.23■■■■□ 3.87
CCM2-219ENST00000544363 TSPYL6Q8N831 410 aa39.23■■■■□ 3.87
CCM2-219ENST00000544363 C8orf58Q8NAV2 365 aa39.23■■■■□ 3.87
CCM2-219ENST00000544363 ZCRB1Q8TBF4 217 aaKnown RBP39.23■■■■□ 3.87
CCM2-219ENST00000544363 USP35Q9P2H5 1018 aa39.23■■■■□ 3.87
CCM2-219ENST00000544363 SLIT2O94813 1529 aa39.22■■■■□ 3.87
CCM2-219ENST00000544363 NWD2Q9ULI1 1742 aa39.22■■■■□ 3.87
CCM2-219ENST00000544363 CYP27B1O15528 508 aa39.22■■■■□ 3.87
CCM2-219ENST00000544363 TWISTNBQ3B726 338 aaPredicted RBP39.22■■■■□ 3.87
CCM2-219ENST00000544363 VIRMAQ69YN4 1812 aaKnown RBP39.22■■■■□ 3.87
CCM2-219ENST00000544363 TEFQ10587 303 aa39.21■■■■□ 3.87
CCM2-219ENST00000544363 ALDH1L2Q3SY69 923 aa39.19■■■■□ 3.86
CCM2-219ENST00000544363 SSH1Q8WYL5 1049 aa39.18■■■■□ 3.86
CCM2-219ENST00000544363 BCL2L13Q9BXK5 485 aa39.18■■■■□ 3.86
CCM2-219ENST00000544363 PCDH11XQ9BZA7 1347 aa39.18■■■■□ 3.86
CCM2-219ENST00000544363 PCDH11YQ9BZA8 1340 aa39.18■■■■□ 3.86
CCM2-219ENST00000544363 ELL2O00472 640 aaPredicted RBP39.18■■■■□ 3.86
CCM2-219ENST00000544363 HSP90AB1P08238 724 aaKnown RBP39.17■■■■□ 3.86
CCM2-219ENST00000544363 SMC4Q9NTJ3 1288 aa39.17■■■■□ 3.86
CCM2-219ENST00000544363 KDM6AO15550 1401 aaPredicted RBP39.16■■■■□ 3.86
CCM2-219ENST00000544363 SCN11AQ9UI33 1791 aa39.15■■■■□ 3.86
CCM2-219ENST00000544363 DISP2A7MBM2 1401 aa39.14■■■■□ 3.86
CCM2-219ENST00000544363 DCAF5Q96JK2 942 aa39.14■■■■□ 3.86
CCM2-219ENST00000544363 KRT24Q2M2I5 525 aa39.14■■■■□ 3.86
CCM2-219ENST00000544363 LRP6O75581 1613 aa39.12■■■■□ 3.85
CCM2-219ENST00000544363 C20orf194Q5TEA3 1177 aa39.12■■■■□ 3.85
CCM2-219ENST00000544363 CANXP27824 592 aaKnown RBP39.11■■■■□ 3.85
CCM2-219ENST00000544363 NGLY1Q96IV0 654 aa39.11■■■■□ 3.85
CCM2-219ENST00000544363 C8orf37Q96NL8 207 aa39.11■■■■□ 3.85
CCM2-219ENST00000544363 SPATA31A1Q5TZJ5 1347 aa39.11■■■■□ 3.85
CCM2-219ENST00000544363 FRAT1Q92837 279 aaPredicted RBP39.11■■■■□ 3.85
CCM2-219ENST00000544363 BTBD11A6QL63 1104 aa39.1■■■■□ 3.85
CCM2-219ENST00000544363 THRAP3Q9Y2W1 955 aaKnown RBP39.1■■■■□ 3.85
CCM2-219ENST00000544363 SHANK3Q9BYB0 1731 aa39.09■■■■□ 3.85
CCM2-219ENST00000544363 SIPA1L3O60292 1781 aaPredicted RBP39.09■■■■□ 3.85
CCM2-219ENST00000544363 BRPF1P55201 1214 aaPredicted RBP39.09■■■■□ 3.85
CCM2-219ENST00000544363 KDM3BQ7LBC6 1761 aa39.09■■■■□ 3.85
CCM2-219ENST00000544363 UNC5CLQ8IV45 518 aa39.08■■■■□ 3.85
CCM2-219ENST00000544363 SPATA31A5Q5VU36 1347 aa39.07■■■■□ 3.85
CCM2-219ENST00000544363 SPATA31A7Q8IWB4 1347 aa39.07■■■■□ 3.85
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms