RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 SRGAP3O43295 1099 aa8.27□□□□□ -1.08
SRGAP1-206ENST00000543397 PDE3AQ14432 1141 aa8.27□□□□□ -1.08
SRGAP1-206ENST00000543397 MCM10Q7L590 875 aa8.27□□□□□ -1.08
SRGAP1-206ENST00000543397 ZSCAN29Q8IWY8 852 aaPredicted RBP8.27□□□□□ -1.08
SRGAP1-206ENST00000543397 CCDC85AQ96PX6 553 aaPredicted RBP8.27□□□□□ -1.08
SRGAP1-206ENST00000543397 TMOD2Q9NZR1 351 aa8.27□□□□□ -1.08
SRGAP1-206ENST00000543397 RAPGEF6Q8TEU7 1601 aa8.27□□□□□ -1.08
SRGAP1-206ENST00000543397 ACEP12821 1306 aa8.27□□□□□ -1.08
SRGAP1-206ENST00000543397 GOLGA6L19H0YKK7 550 aa8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 TAF7Q15545 349 aaPredicted RBP8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 ATF7IPQ6VMQ6 1270 aa8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 GCC1Q96CN9 775 aa8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 DDX49Q9Y6V7 483 aaKnown RBP8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 ZSCAN25Q6NSZ9 544 aa8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 BICD2Q8TD16 824 aa8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 TPM1P09493 284 aa8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 IFNL2Q8IZJ0 200 aa8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 LRRCC1Q9C099 1032 aa8.27□□□□□ -1.09
SRGAP1-206ENST00000543397 HSP90AB3PQ58FF7 597 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 LARP1Q6PKG0 1096 aaKnown RBP8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 PAF1Q8N7H5 531 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 ANKRD20A12PQ8NF67 263 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 AK7Q96M32 723 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 MIS18AQ9NYP9 233 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 R3HCC1Q9Y3T6 440 aaKnown RBP8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 DUSP27Q5VZP5 1158 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 TTC21BQ7Z4L5 1316 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 FKBP4Q02790 459 aaKnown RBP eCLIP8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 C8orf37Q96NL8 207 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 FMNL2Q96PY5 1086 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 C19orf44Q9H6X5 657 aa8.26□□□□□ -1.09
SRGAP1-206ENST00000543397 GOLGA6L3A6NEY3 463 aa8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 RBM26Q5T8P6 1007 aaKnown RBP8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 THUMPD2Q9BTF0 503 aaKnown RBP8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 RAI14Q9P0K7 980 aa8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 ABCC10Q5T3U5 1492 aa8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 ANKRD24Q8TF21 1146 aa8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 SCAF11Q99590 1463 aaKnown RBP8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 LRP2BPQ9P2M1 347 aa8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 DCTN1Q14203 1278 aa8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 TEX13AQ9BXU3 409 aaPredicted RBP8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 BCAR3O75815 825 aa8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 AACSQ86V21 672 aa8.25□□□□□ -1.09
SRGAP1-206ENST00000543397 METTL24Q5JXM2 366 aa8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 NUP153P49790 1475 aaKnown RBP8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 RIMS2Q9UQ26 1411 aa8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 PCMTD1Q96MG8 357 aaPredicted RBP8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 C22orf23Q9BZE7 217 aa8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 TRMT112Q9UI30 125 aaKnown RBP8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 RPGRQ92834 1020 aaKnown RBP8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 ABCF2Q9UG63 623 aa8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 ANKIB1Q9P2G1 1089 aa8.24□□□□□ -1.09
SRGAP1-206ENST00000543397 SYCP2Q9BX26 1530 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 LMTK3Q96Q04 1460 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 IFIT1P09914 478 aaKnown RBP8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 CCDC73Q6ZRK6 1079 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 DUOX2Q9NRD8 1548 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 CAVIN4Q5BKX8 364 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 TTC21AQ8NDW8 1320 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 NCKAP5LQ9HCH0 1330 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 IPO7O95373 1038 aaKnown RBP8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 VASPP50552 380 aaPredicted RBP8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 IFT57Q9NWB7 429 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 IDH1O75874 414 aaKnown RBP8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 CCDC82Q8N4S0 544 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 MYD88Q99836 296 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 TRAPPC8Q9Y2L5 1435 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 ABCC2Q92887 1545 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 WDHD1O75717 1129 aaPredicted RBP8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 TDO2P48775 406 aa8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 SKOR2Q2VWA4 1001 aaPredicted RBP8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 DBF4Q9UBU7 674 aaPredicted RBP8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.23□□□□□ -1.09
SRGAP1-206ENST00000543397 ATP2B1P20020 1258 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 LRRC59Q96AG4 307 aaKnown RBP8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 NSD2O96028 1365 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 ABCC11Q96J66 1382 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 ZMYM3Q14202 1370 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 RFC4P35249 363 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 IFIT5Q13325 482 aaKnown RBP8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 AKAP2Q9Y2D5 859 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 NUCB2P80303 420 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 MVPQ14764 893 aaKnown RBP8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 DDB1Q16531 1140 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 RPAP2Q8IXW5 612 aaPredicted RBP8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 SPINK5Q9NQ38 1064 aaPredicted RBP8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 ADAMTS12P58397 1594 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 HYPKQ9NX55 129 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 PDZRN3Q9UPQ7 1066 aa8.22□□□□□ -1.09
SRGAP1-206ENST00000543397 SMARCA5O60264 1052 aaPredicted RBP8.21□□□□□ -1.09
SRGAP1-206ENST00000543397 ZBTB3Q9H5J0 574 aa8.21□□□□□ -1.09
SRGAP1-206ENST00000543397 IL1RAPL2Q9NP60 686 aa8.21□□□□□ -1.09
SRGAP1-206ENST00000543397 ZNF219Q9P2Y4 722 aaPredicted RBP8.21□□□□□ -1.09
SRGAP1-206ENST00000543397 GPTP24298 496 aa8.21□□□□□ -1.1
SRGAP1-206ENST00000543397 TRIM22Q8IYM9 498 aa8.21□□□□□ -1.1
SRGAP1-206ENST00000543397 ZCRB1Q8TBF4 217 aaKnown RBP8.21□□□□□ -1.1
SRGAP1-206ENST00000543397 EIF4G3O43432 1585 aaKnown RBP8.21□□□□□ -1.1
SRGAP1-206ENST00000543397 ANKRD62A6NC57 917 aa8.21□□□□□ -1.1
SRGAP1-206ENST00000543397 NEK4P51957 841 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms