RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NFAT5O94916 1531 aa12.46□□□□□ -0.42
SS18-205ENST00000542420 CAMTA1Q9Y6Y1 1673 aa12.46□□□□□ -0.42
SS18-205ENST00000542420 ZBTB7BO15156 539 aaPredicted RBP12.45□□□□□ -0.42
SS18-205ENST00000542420 MST1RQ04912 1400 aa12.45□□□□□ -0.42
SS18-205ENST00000542420 KCNA6P17658 529 aa12.45□□□□□ -0.42
SS18-205ENST00000542420 USP19O94966 1318 aa12.45□□□□□ -0.42
SS18-205ENST00000542420 SLIT3O75094 1523 aa12.44□□□□□ -0.42
SS18-205ENST00000542420 DAXXQ9UER7 740 aaPredicted RBP12.44□□□□□ -0.42
SS18-205ENST00000542420 LMO7Q8WWI1 1683 aa12.44□□□□□ -0.42
SS18-205ENST00000542420 NPHP4O75161 1426 aaPredicted RBP12.44□□□□□ -0.42
SS18-205ENST00000542420 NUCB1Q02818 461 aa12.44□□□□□ -0.42
SS18-205ENST00000542420 INTS3Q68E01 1043 aaKnown RBP12.44□□□□□ -0.42
SS18-205ENST00000542420 BECN1Q14457 450 aa12.43□□□□□ -0.42
SS18-205ENST00000542420 HSP90AB2PQ58FF8 381 aa12.43□□□□□ -0.42
SS18-205ENST00000542420 LAS1LQ9Y4W2 734 aaKnown RBP12.43□□□□□ -0.42
SS18-205ENST00000542420 TRPM3Q9HCF6 1732 aaPredicted RBP12.43□□□□□ -0.42
SS18-205ENST00000542420 RTL5Q5HYW3 569 aaPredicted RBP12.43□□□□□ -0.42
SS18-205ENST00000542420 MED1Q15648 1581 aaPredicted RBP12.43□□□□□ -0.42
SS18-205ENST00000542420 C8orf58Q8NAV2 365 aa12.42□□□□□ -0.42
SS18-205ENST00000542420 RGS12O14924 1447 aa12.42□□□□□ -0.42
SS18-205ENST00000542420 NCAPD2Q15021 1401 aa12.42□□□□□ -0.42
SS18-205ENST00000542420 AMPHP49418 695 aa12.42□□□□□ -0.42
SS18-205ENST00000542420 AEBP1Q8IUX7 1158 aa12.42□□□□□ -0.42
SS18-205ENST00000542420 TSPYL6Q8N831 410 aa12.42□□□□□ -0.42
SS18-205ENST00000542420 TBC1D32Q96NH3 1257 aa12.42□□□□□ -0.42
SS18-205ENST00000542420 PLEKHG2Q9H7P9 1386 aa12.41□□□□□ -0.42
SS18-205ENST00000542420 KDM3BQ7LBC6 1761 aa12.41□□□□□ -0.42
SS18-205ENST00000542420 PXDNLA1KZ92 1463 aa12.41□□□□□ -0.42
SS18-205ENST00000542420 THUMPD2Q9BTF0 503 aaKnown RBP12.41□□□□□ -0.42
SS18-205ENST00000542420 CHMP4AQ9BY43 222 aa12.41□□□□□ -0.42
SS18-205ENST00000542420 RTN4Q9NQC3 1192 aaKnown RBP12.41□□□□□ -0.42
SS18-205ENST00000542420 PHF8Q9UPP1 1060 aa12.41□□□□□ -0.42
SS18-205ENST00000542420 OVOS2A0A0G2JMS6 1433 aa12.41□□□□□ -0.42
SS18-205ENST00000542420 RTF1Q92541 710 aaKnown RBP12.4□□□□□ -0.42
SS18-205ENST00000542420 NCOA3Q9Y6Q9 1424 aa12.4□□□□□ -0.42
SS18-205ENST00000542420 ABCC6O95255 1503 aa12.4□□□□□ -0.42
SS18-205ENST00000542420 HOXC9P31274 260 aa12.4□□□□□ -0.42
SS18-205ENST00000542420 NLRP6P59044 892 aa12.4□□□□□ -0.42
SS18-205ENST00000542420 KCNH5Q8NCM2 988 aa12.4□□□□□ -0.42
SS18-205ENST00000542420 TRHP20396 242 aaPredicted RBP12.39□□□□□ -0.43
SS18-205ENST00000542420 EYA1Q99502 592 aa12.39□□□□□ -0.43
SS18-205ENST00000542420 BMP2KLQ5H9B9 411 aa12.39□□□□□ -0.43
SS18-205ENST00000542420 CHD1LQ86WJ1 897 aa12.39□□□□□ -0.43
SS18-205ENST00000542420 RPAP2Q8IXW5 612 aaPredicted RBP12.39□□□□□ -0.43
SS18-205ENST00000542420 FAM83GA6ND36 823 aa12.38□□□□□ -0.43
SS18-205ENST00000542420 MAP3K5Q99683 1374 aa12.38□□□□□ -0.43
SS18-205ENST00000542420 ALS2Q96Q42 1657 aa12.37□□□□□ -0.43
SS18-205ENST00000542420 ADAMTS7Q9UKP4 1686 aa12.37□□□□□ -0.43
SS18-205ENST00000542420 NUTM2FA1L443 756 aa12.37□□□□□ -0.43
SS18-205ENST00000542420 MTHFSDQ2M296 383 aaKnown RBP12.37□□□□□ -0.43
SS18-205ENST00000542420 IP6K1Q92551 441 aa12.37□□□□□ -0.43
SS18-205ENST00000542420 DCCP43146 1447 aa12.37□□□□□ -0.43
SS18-205ENST00000542420 GNAT3A8MTJ3 354 aa12.37□□□□□ -0.43
SS18-205ENST00000542420 ATP10DQ9P241 1426 aa12.36□□□□□ -0.43
SS18-205ENST00000542420 ABTB2Q8N961 1025 aa12.36□□□□□ -0.43
SS18-205ENST00000542420 CCT4P50991 539 aaKnown RBP12.36□□□□□ -0.43
SS18-205ENST00000542420 DCTN1Q14203 1278 aa12.35□□□□□ -0.43
SS18-205ENST00000542420 ANKRD44Q8N8A2 993 aa12.35□□□□□ -0.43
SS18-205ENST00000542420 DCTPP1Q9H773 170 aa12.35□□□□□ -0.43
SS18-205ENST00000542420 SIPA1L3O60292 1781 aaPredicted RBP12.35□□□□□ -0.43
SS18-205ENST00000542420 MSH6P52701 1360 aa12.35□□□□□ -0.43
SS18-205ENST00000542420 CEMIPQ8WUJ3 1361 aa12.35□□□□□ -0.43
SS18-205ENST00000542420 HOXB7P09629 217 aa12.34□□□□□ -0.43
SS18-205ENST00000542420 MCM10Q7L590 875 aa12.34□□□□□ -0.43
SS18-205ENST00000542420 TSPYL4Q9UJ04 414 aa12.34□□□□□ -0.43
SS18-205ENST00000542420 RGPD2P0DJD1 1756 aa12.34□□□□□ -0.43
SS18-205ENST00000542420 SEC24BO95487 1268 aa12.33□□□□□ -0.44
SS18-205ENST00000542420 RBM25P49756 843 aaKnown RBP12.33□□□□□ -0.44
SS18-205ENST00000542420 CCDC30Q5VVM6 783 aa12.33□□□□□ -0.44
SS18-205ENST00000542420 TUBGCP6Q96RT7 1819 aa12.33□□□□□ -0.44
SS18-205ENST00000542420 SIRT2Q8IXJ6 389 aa12.32□□□□□ -0.44
SS18-205ENST00000542420 PKNOX2Q96KN3 472 aa12.32□□□□□ -0.44
SS18-205ENST00000542420 DNAJC5Q9H3Z4 198 aa12.32□□□□□ -0.44
SS18-205ENST00000542420 CRYBG1Q9Y4K1 1723 aa12.32□□□□□ -0.44
SS18-205ENST00000542420 ELL2O00472 640 aaPredicted RBP12.32□□□□□ -0.44
SS18-205ENST00000542420 HMMRO75330 724 aa12.32□□□□□ -0.44
SS18-205ENST00000542420 TAF7Q15545 349 aaPredicted RBP12.32□□□□□ -0.44
SS18-205ENST00000542420 STK31Q9BXU1 1019 aa12.31□□□□□ -0.44
SS18-205ENST00000542420 C22orf23Q9BZE7 217 aa12.31□□□□□ -0.44
SS18-205ENST00000542420 AMOTQ4VCS5 1084 aa12.3□□□□□ -0.44
SS18-205ENST00000542420 ANKRD45Q5TZF3 282 aa12.3□□□□□ -0.44
SS18-205ENST00000542420 SNX21Q969T3 373 aa12.3□□□□□ -0.44
SS18-205ENST00000542420 IBTKQ9P2D0 1353 aaPredicted RBP12.3□□□□□ -0.44
SS18-205ENST00000542420 PSME1Q06323 249 aa12.29□□□□□ -0.44
SS18-205ENST00000542420 LNPKQ9C0E8 428 aa12.29□□□□□ -0.44
SS18-205ENST00000542420 C1orf167Q5SNV9 1468 aa12.29□□□□□ -0.44
SS18-205ENST00000542420 SLC4A2P04920 1241 aa12.29□□□□□ -0.44
SS18-205ENST00000542420 CEP85Q6P2H3 762 aa12.29□□□□□ -0.44
SS18-205ENST00000542420 GNAI3P08754 354 aa12.28□□□□□ -0.44
SS18-205ENST00000542420 FOXO3O43524 673 aa12.28□□□□□ -0.44
SS18-205ENST00000542420 NFKBIBQ15653 356 aa12.28□□□□□ -0.44
SS18-205ENST00000542420 SCN11AQ9UI33 1791 aa12.28□□□□□ -0.44
SS18-205ENST00000542420 COL18A1P39060 1754 aa12.27□□□□□ -0.44
SS18-205ENST00000542420 ESCO1Q5FWF5 840 aa12.27□□□□□ -0.44
SS18-205ENST00000542420 AKAP4Q5JQC9 854 aa12.27□□□□□ -0.44
SS18-205ENST00000542420 ARHGEF25Q86VW2 580 aa12.27□□□□□ -0.44
SS18-205ENST00000542420 SOX12O15370 315 aa12.27□□□□□ -0.45
SS18-205ENST00000542420 CDC45O75419 566 aa12.27□□□□□ -0.45
SS18-205ENST00000542420 PLEKHO1Q53GL0 409 aaPredicted RBP12.27□□□□□ -0.45
SS18-205ENST00000542420 IL17REQ8NFR9 667 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms