RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 ZNF827Q17R98 1081 aa19.7■□□□□ 0.74
SNHG1-213ENST00000540725 NBPF6Q5VWK0 638 aa19.7■□□□□ 0.74
SNHG1-213ENST00000540725 NBPF4Q96M43 638 aa19.7■□□□□ 0.74
SNHG1-213ENST00000540725 YY1P25490 414 aa19.69■□□□□ 0.74
SNHG1-213ENST00000540725 PRIM1P49642 420 aaKnown RBP19.69■□□□□ 0.74
SNHG1-213ENST00000540725 USHBP1Q8N6Y0 703 aa19.69■□□□□ 0.74
SNHG1-213ENST00000540725 SYTL4Q96C24 671 aaPredicted RBP19.69■□□□□ 0.74
SNHG1-213ENST00000540725 TIMELESSQ9UNS1 1208 aa19.69■□□□□ 0.74
SNHG1-213ENST00000540725 SLC27A3Q5K4L6 730 aa19.68■□□□□ 0.74
SNHG1-213ENST00000540725 SGIP1Q9BQI5 828 aa19.68■□□□□ 0.74
SNHG1-213ENST00000540725 NSD2O96028 1365 aa19.67■□□□□ 0.74
SNHG1-213ENST00000540725 INSRP06213 1382 aa19.67■□□□□ 0.74
SNHG1-213ENST00000540725 FLT4P35916 1363 aa19.67■□□□□ 0.74
SNHG1-213ENST00000540725 NSD3Q9BZ95 1437 aa19.67■□□□□ 0.74
SNHG1-213ENST00000540725 CARD14Q9BXL6 1004 aa19.67■□□□□ 0.74
SNHG1-213ENST00000540725 CGNL1Q0VF96 1302 aa19.67■□□□□ 0.74
SNHG1-213ENST00000540725 KIF24Q5T7B8 1368 aa19.66■□□□□ 0.74
SNHG1-213ENST00000540725 HSP90AB2PQ58FF8 381 aa19.66■□□□□ 0.74
SNHG1-213ENST00000540725 RAPGEF4Q8WZA2 1011 aa19.66■□□□□ 0.74
SNHG1-213ENST00000540725 MAP2P11137 1827 aaKnown RBP19.65■□□□□ 0.74
SNHG1-213ENST00000540725 ANKRD26Q9UPS8 1709 aa19.65■□□□□ 0.74
SNHG1-213ENST00000540725 AKT1S1Q96B36 256 aa19.65■□□□□ 0.74
SNHG1-213ENST00000540725 FHDC1Q9C0D6 1143 aaPredicted RBP19.65■□□□□ 0.74
SNHG1-213ENST00000540725 CLSPNQ9HAW4 1339 aa19.65■□□□□ 0.74
SNHG1-213ENST00000540725 TATP17735 454 aaPredicted RBP19.63■□□□□ 0.73
SNHG1-213ENST00000540725 KCNQ4P56696 695 aa19.63■□□□□ 0.73
SNHG1-213ENST00000540725 SYT17Q9BSW7 474 aa19.63■□□□□ 0.73
SNHG1-213ENST00000540725 PCGF6Q9BYE7 350 aa19.63■□□□□ 0.73
SNHG1-213ENST00000540725 COL24A1Q17RW2 1714 aa19.63■□□□□ 0.73
SNHG1-213ENST00000540725 ARXQ96QS3 562 aa19.62■□□□□ 0.73
SNHG1-213ENST00000540725 EMILIN1Q9Y6C2 1016 aa19.62■□□□□ 0.73
SNHG1-213ENST00000540725 PKD1L3Q7Z443 1732 aa19.62■□□□□ 0.73
SNHG1-213ENST00000540725 CHD4Q14839 1912 aa19.61■□□□□ 0.73
SNHG1-213ENST00000540725 ITGB4P16144 1822 aa19.61■□□□□ 0.73
SNHG1-213ENST00000540725 PNPLA7Q6ZV29 1317 aa19.6■□□□□ 0.73
SNHG1-213ENST00000540725 PCDH11XQ9BZA7 1347 aa19.6■□□□□ 0.73
SNHG1-213ENST00000540725 PCDH11YQ9BZA8 1340 aa19.6■□□□□ 0.73
SNHG1-213ENST00000540725 UTRNP46939 3433 aa19.6■□□□□ 0.73
SNHG1-213ENST00000540725 SLC16A10Q8TF71 515 aa19.59■□□□□ 0.73
SNHG1-213ENST00000540725 TFCP2L1Q9NZI6 479 aa19.59■□□□□ 0.73
SNHG1-213ENST00000540725 CCNL1Q9UK58 526 aaPredicted RBP19.59■□□□□ 0.73
SNHG1-213ENST00000540725 TOGARAM1Q9Y4F4 1720 aa19.59■□□□□ 0.73
SNHG1-213ENST00000540725 MAP3K5Q99683 1374 aa19.59■□□□□ 0.73
SNHG1-213ENST00000540725 TAF1LQ8IZX4 1826 aa19.58■□□□□ 0.73
SNHG1-213ENST00000540725 C5P01031 1676 aa19.58■□□□□ 0.72
SNHG1-213ENST00000540725 NCAPD2Q15021 1401 aa19.57■□□□□ 0.72
SNHG1-213ENST00000540725 PPM1GO15355 546 aaPredicted RBP19.57■□□□□ 0.72
SNHG1-213ENST00000540725 CYP27B1O15528 508 aa19.56■□□□□ 0.72
SNHG1-213ENST00000540725 POLR3GLQ9BT43 218 aa19.56■□□□□ 0.72
SNHG1-213ENST00000540725 POLD1P28340 1107 aa19.55■□□□□ 0.72
SNHG1-213ENST00000540725 WASHC2AQ641Q2 1341 aa19.54■□□□□ 0.72
SNHG1-213ENST00000540725 PALLDQ8WX93 1383 aa19.53■□□□□ 0.72
SNHG1-213ENST00000540725 MPRIPQ6WCQ1 1025 aa19.52■□□□□ 0.72
SNHG1-213ENST00000540725 KLHL34Q8N239 644 aa19.51■□□□□ 0.71
SNHG1-213ENST00000540725 EYA1Q99502 592 aa19.51■□□□□ 0.71
SNHG1-213ENST00000540725 POLKQ9UBT6 870 aa19.51■□□□□ 0.71
SNHG1-213ENST00000540725 MSH5O43196 834 aa19.5■□□□□ 0.71
SNHG1-213ENST00000540725 EIF4G2P78344 907 aaKnown RBP eCLIP19.5■□□□□ 0.71
SNHG1-213ENST00000540725 HSPA5P11021 654 aaKnown RBP19.49■□□□□ 0.71
SNHG1-213ENST00000540725 COL23A1Q86Y22 540 aaPredicted RBP19.49■□□□□ 0.71
SNHG1-213ENST00000540725 SPG7Q9UQ90 795 aa19.49■□□□□ 0.71
SNHG1-213ENST00000540725 C4BP0C0L5 1744 aa19.49■□□□□ 0.71
SNHG1-213ENST00000540725 GOLGB1Q14789 3259 aaKnown RBP19.48■□□□□ 0.71
SNHG1-213ENST00000540725 HMGB2P26583 209 aaKnown RBP19.47■□□□□ 0.71
SNHG1-213ENST00000540725 TNNT2P45379 298 aaPredicted RBP19.47■□□□□ 0.71
SNHG1-213ENST00000540725 NKX1-1Q15270 411 aaPredicted RBP19.47■□□□□ 0.71
SNHG1-213ENST00000540725 SMARCC1Q92922 1105 aaPredicted RBP19.47■□□□□ 0.71
SNHG1-213ENST00000540725 UBR3Q6ZT12 1888 aa19.47■□□□□ 0.71
SNHG1-213ENST00000540725 PIGBQ92521 554 aa19.46■□□□□ 0.71
SNHG1-213ENST00000540725 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.46■□□□□ 0.71
SNHG1-213ENST00000540725 EIF4A2Q14240 407 aaKnown RBP19.45■□□□□ 0.7
SNHG1-213ENST00000540725 GPR162Q16538 588 aa19.45■□□□□ 0.7
SNHG1-213ENST00000540725 MSL1Q68DK7 614 aa19.44■□□□□ 0.7
SNHG1-213ENST00000540725 ZNF784Q8NCA9 323 aaPredicted RBP19.44■□□□□ 0.7
SNHG1-213ENST00000540725 PANK3Q9H999 370 aa19.44■□□□□ 0.7
SNHG1-213ENST00000540725 FLAD1Q8NFF5 587 aa19.44■□□□□ 0.7
SNHG1-213ENST00000540725 NLGN2Q8NFZ4 835 aa19.44■□□□□ 0.7
SNHG1-213ENST00000540725 CCER1Q8TC90 406 aaPredicted RBP19.44■□□□□ 0.7
SNHG1-213ENST00000540725 IFNL2Q8IZJ0 200 aa19.43■□□□□ 0.7
SNHG1-213ENST00000540725 PHKG2P15735 406 aa19.42■□□□□ 0.7
SNHG1-213ENST00000540725 PELP1Q8IZL8 1130 aaKnown RBP19.42■□□□□ 0.7
SNHG1-213ENST00000540725 AK7Q96M32 723 aa19.42■□□□□ 0.7
SNHG1-213ENST00000540725 TMOD3Q9NYL9 352 aa19.42■□□□□ 0.7
SNHG1-213ENST00000540725 PLEKHG2Q9H7P9 1386 aa19.42■□□□□ 0.7
SNHG1-213ENST00000540725 IGSF1Q8N6C5 1336 aa19.41■□□□□ 0.7
SNHG1-213ENST00000540725 LOC102724428A0A0B4J2F2 783 aa19.4■□□□□ 0.7
SNHG1-213ENST00000540725 SIK1P57059 783 aa19.4■□□□□ 0.7
SNHG1-213ENST00000540725 AMIGO3Q86WK7 504 aa19.39■□□□□ 0.69
SNHG1-213ENST00000540725 ASAP1Q9ULH1 1129 aa19.39■□□□□ 0.69
SNHG1-213ENST00000540725 PHF14O94880 888 aa19.37■□□□□ 0.69
SNHG1-213ENST00000540725 LINC00116Q8NCU8 138 aa19.37■□□□□ 0.69
SNHG1-213ENST00000540725 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.36■□□□□ 0.69
SNHG1-213ENST00000540725 SMIM5Q71RC9 77 aa19.36■□□□□ 0.69
SNHG1-213ENST00000540725 MORC1Q86VD1 984 aa19.36■□□□□ 0.69
SNHG1-213ENST00000540725 ZNF831Q5JPB2 1677 aa19.35■□□□□ 0.69
SNHG1-213ENST00000540725 YBX3P16989 372 aaKnown RBP eCLIP19.34■□□□□ 0.69
SNHG1-213ENST00000540725 SSFA2P28290 1259 aa19.34■□□□□ 0.69
SNHG1-213ENST00000540725 ATP6V1AP38606 617 aa19.34■□□□□ 0.69
SNHG1-213ENST00000540725 ITPK1Q13572 414 aa19.34■□□□□ 0.69
SNHG1-213ENST00000540725 ATG3Q9NT62 314 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 184.7 ms