RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 TOMM70O94826 608 aa17.31■□□□□ 0.36
YBX3-207ENST00000539204 USP31Q70CQ4 1352 aa17.3■□□□□ 0.36
YBX3-207ENST00000539204 NME9Q86XW9 330 aa17.29■□□□□ 0.36
YBX3-207ENST00000539204 ZCRB1Q8TBF4 217 aaKnown RBP17.29■□□□□ 0.36
YBX3-207ENST00000539204 WWC3Q9ULE0 1092 aa17.29■□□□□ 0.36
YBX3-207ENST00000539204 USP47Q96K76 1375 aa17.28■□□□□ 0.36
YBX3-207ENST00000539204 IGSF1Q8N6C5 1336 aa17.28■□□□□ 0.36
YBX3-207ENST00000539204 LTV1Q96GA3 475 aaPredicted RBP17.28■□□□□ 0.36
YBX3-207ENST00000539204 TUBGCP6Q96RT7 1819 aa17.28■□□□□ 0.36
YBX3-207ENST00000539204 CAPN15O75808 1086 aa17.27■□□□□ 0.36
YBX3-207ENST00000539204 COL13A1Q5TAT6 717 aaPredicted RBP17.27■□□□□ 0.36
YBX3-207ENST00000539204 IP6K1Q92551 441 aa17.27■□□□□ 0.36
YBX3-207ENST00000539204 NSD2O96028 1365 aa17.26■□□□□ 0.35
YBX3-207ENST00000539204 LY75O60449 1722 aa17.24■□□□□ 0.35
YBX3-207ENST00000539204 HDGFL2Q7Z4V5 671 aaPredicted RBP17.22■□□□□ 0.35
YBX3-207ENST00000539204 TNS4Q8IZW8 715 aa17.22■□□□□ 0.35
YBX3-207ENST00000539204 TMC1Q8TDI8 760 aa17.22■□□□□ 0.35
YBX3-207ENST00000539204 KLRG1Q96E93 195 aa17.21■□□□□ 0.35
YBX3-207ENST00000539204 PRELPP51888 382 aa17.2■□□□□ 0.34
YBX3-207ENST00000539204 AK7Q96M32 723 aa17.2■□□□□ 0.34
YBX3-207ENST00000539204 LTN1O94822 1766 aa17.2■□□□□ 0.34
YBX3-207ENST00000539204 SBNO2Q9Y2G9 1366 aa17.19■□□□□ 0.34
YBX3-207ENST00000539204 JMYQ8N9B5 988 aa17.19■□□□□ 0.34
YBX3-207ENST00000539204 AMPHP49418 695 aa17.18■□□□□ 0.34
YBX3-207ENST00000539204 C16orf71Q8IYS4 520 aaPredicted RBP17.18■□□□□ 0.34
YBX3-207ENST00000539204 RBM46Q8TBY0 533 aaKnown RBP17.18■□□□□ 0.34
YBX3-207ENST00000539204 PHF14O94880 888 aa17.17■□□□□ 0.34
YBX3-207ENST00000539204 HTRA3P83110 453 aa17.17■□□□□ 0.34
YBX3-207ENST00000539204 MPRIPQ6WCQ1 1025 aa17.17■□□□□ 0.34
YBX3-207ENST00000539204 L3MBTL2Q969R5 705 aa17.17■□□□□ 0.34
YBX3-207ENST00000539204 SLC12A5Q9H2X9 1139 aa17.17■□□□□ 0.34
YBX3-207ENST00000539204 NMRK2Q9NPI5 230 aa17.17■□□□□ 0.34
YBX3-207ENST00000539204 DOT1LQ8TEK3 1739 aa17.16■□□□□ 0.34
YBX3-207ENST00000539204 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.16■□□□□ 0.34
YBX3-207ENST00000539204 ARHGAP27Q6ZUM4 889 aa17.16■□□□□ 0.34
YBX3-207ENST00000539204 TERF2IPQ9NYB0 399 aa17.16■□□□□ 0.34
YBX3-207ENST00000539204 CGNL1Q0VF96 1302 aa17.16■□□□□ 0.34
YBX3-207ENST00000539204 PCNTO95613 3336 aa17.16■□□□□ 0.34
YBX3-207ENST00000539204 PALLDQ8WX93 1383 aa17.15■□□□□ 0.34
YBX3-207ENST00000539204 HOXC9P31274 260 aa17.15■□□□□ 0.34
YBX3-207ENST00000539204 SMARCC1Q92922 1105 aaPredicted RBP17.15■□□□□ 0.34
YBX3-207ENST00000539204 TGFB2P61812 414 aa17.14■□□□□ 0.33
YBX3-207ENST00000539204 FSTL1Q12841 308 aa17.14■□□□□ 0.33
YBX3-207ENST00000539204 SMIM5Q71RC9 77 aa17.14■□□□□ 0.33
YBX3-207ENST00000539204 AMIGO3Q86WK7 504 aa17.14■□□□□ 0.33
YBX3-207ENST00000539204 RAPGEF4Q8WZA2 1011 aa17.14■□□□□ 0.33
YBX3-207ENST00000539204 BCS1LQ9Y276 419 aa17.14■□□□□ 0.33
YBX3-207ENST00000539204 ROCK2O75116 1388 aaKnown RBP17.14■□□□□ 0.33
YBX3-207ENST00000539204 MON2Q7Z3U7 1717 aa17.13■□□□□ 0.33
YBX3-207ENST00000539204 SSFA2P28290 1259 aa17.13■□□□□ 0.33
YBX3-207ENST00000539204 NBPF6Q5VWK0 638 aa17.13■□□□□ 0.33
YBX3-207ENST00000539204 NBPF4Q96M43 638 aa17.13■□□□□ 0.33
YBX3-207ENST00000539204 MAP3K19Q56UN5 1328 aa17.13■□□□□ 0.33
YBX3-207ENST00000539204 USP54Q70EL1 1684 aa17.13■□□□□ 0.33
YBX3-207ENST00000539204 EDC4Q6P2E9 1401 aaKnown RBP17.13■□□□□ 0.33
YBX3-207ENST00000539204 CD163L1Q9NR16 1453 aa17.12■□□□□ 0.33
YBX3-207ENST00000539204 TATP17735 454 aaPredicted RBP17.12■□□□□ 0.33
YBX3-207ENST00000539204 COG3Q96JB2 828 aa17.12■□□□□ 0.33
YBX3-207ENST00000539204 C5P01031 1676 aa17.12■□□□□ 0.33
YBX3-207ENST00000539204 NSD3Q9BZ95 1437 aa17.12■□□□□ 0.33
YBX3-207ENST00000539204 MEGF6O75095 1541 aa17.11■□□□□ 0.33
YBX3-207ENST00000539204 A0A0G2JLW4 131 aa17.11■□□□□ 0.33
YBX3-207ENST00000539204 FBLN1P23142 703 aa17.11■□□□□ 0.33
YBX3-207ENST00000539204 USHBP1Q8N6Y0 703 aa17.1■□□□□ 0.33
YBX3-207ENST00000539204 FAM208AQ9UK61 1670 aaKnown RBP17.1■□□□□ 0.33
YBX3-207ENST00000539204 MMP10P09238 476 aa17.09■□□□□ 0.33
YBX3-207ENST00000539204 PCDH11XQ9BZA7 1347 aa17.09■□□□□ 0.33
YBX3-207ENST00000539204 PCDH11YQ9BZA8 1340 aa17.09■□□□□ 0.33
YBX3-207ENST00000539204 WDR90Q96KV7 1748 aa17.08■□□□□ 0.32
YBX3-207ENST00000539204 FCHSD2O94868 740 aa17.08■□□□□ 0.32
YBX3-207ENST00000539204 C9orf131Q5VYM1 1079 aa17.08■□□□□ 0.32
YBX3-207ENST00000539204 KDM2BQ8NHM5 1336 aa17.07■□□□□ 0.32
YBX3-207ENST00000539204 PIGBQ92521 554 aa17.07■□□□□ 0.32
YBX3-207ENST00000539204 C4BP0C0L5 1744 aa17.07■□□□□ 0.32
YBX3-207ENST00000539204 CICQ96RK0 1608 aaPredicted RBP17.07■□□□□ 0.32
YBX3-207ENST00000539204 A0A1W2PP64 1363 aa17.06■□□□□ 0.32
YBX3-207ENST00000539204 LOC102724428A0A0B4J2F2 783 aa17.06■□□□□ 0.32
YBX3-207ENST00000539204 GNPATO15228 680 aa17.06■□□□□ 0.32
YBX3-207ENST00000539204 SIK1P57059 783 aa17.06■□□□□ 0.32
YBX3-207ENST00000539204 NLGN1Q8N2Q7 840 aa17.06■□□□□ 0.32
YBX3-207ENST00000539204 LINC00116Q8NCU8 138 aa17.06■□□□□ 0.32
YBX3-207ENST00000539204 RRAGCQ9HB90 399 aa17.06■□□□□ 0.32
YBX3-207ENST00000539204 TAF1LQ8IZX4 1826 aa17.05■□□□□ 0.32
YBX3-207ENST00000539204 CYP27B1O15528 508 aa17.05■□□□□ 0.32
YBX3-207ENST00000539204 PXDNLA1KZ92 1463 aa17.05■□□□□ 0.32
YBX3-207ENST00000539204 DPEP1P16444 411 aa17.04■□□□□ 0.32
YBX3-207ENST00000539204 TMF1P82094 1093 aa17.04■□□□□ 0.32
YBX3-207ENST00000539204 RRS1Q15050 365 aaKnown RBP17.04■□□□□ 0.32
YBX3-207ENST00000539204 PUS7Q96PZ0 661 aaKnown RBP17.04■□□□□ 0.32
YBX3-207ENST00000539204 ATP6V1AP38606 617 aa17.03■□□□□ 0.32
YBX3-207ENST00000539204 TRAPPC3LQ5T215 181 aa17.03■□□□□ 0.32
YBX3-207ENST00000539204 SMC1BQ8NDV3 1235 aa17.03■□□□□ 0.32
YBX3-207ENST00000539204 CCDC87Q9NVE4 849 aa17.03■□□□□ 0.32
YBX3-207ENST00000539204 PLEKHG2Q9H7P9 1386 aa17.02■□□□□ 0.32
YBX3-207ENST00000539204 SMG6Q86US8 1419 aaKnown RBP17.02■□□□□ 0.31
YBX3-207ENST00000539204 RGPD2P0DJD1 1756 aa17.02■□□□□ 0.31
YBX3-207ENST00000539204 UBR3Q6ZT12 1888 aa17.01■□□□□ 0.31
YBX3-207ENST00000539204 HSPA1AP0DMV8 641 aaKnown RBP17.01■□□□□ 0.31
YBX3-207ENST00000539204 HSPA1BP0DMV9 641 aaKnown RBP17.01■□□□□ 0.31
YBX3-207ENST00000539204 CARD11Q9BXL7 1154 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms