RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 PDRG1Q9NUG6 133 aa11.68□□□□□ -0.54
COL4A6-208ENST00000538570 SEPT11Q9NVA2 429 aaKnown RBP11.68□□□□□ -0.54
COL4A6-208ENST00000538570 FYCO1Q9BQS8 1478 aa11.68□□□□□ -0.54
COL4A6-208ENST00000538570 ANKRD50Q9ULJ7 1429 aa11.68□□□□□ -0.54
COL4A6-208ENST00000538570 BLOC1S2Q6QNY1 142 aa11.68□□□□□ -0.54
COL4A6-208ENST00000538570 CCDC102AQ96A19 550 aa11.68□□□□□ -0.54
COL4A6-208ENST00000538570 UPF3BQ9BZI7 483 aaKnown RBP11.68□□□□□ -0.54
COL4A6-208ENST00000538570 DCAF8L1A6NGE4 600 aa11.67□□□□□ -0.54
COL4A6-208ENST00000538570 HDGFL1Q5TGJ6 251 aa11.67□□□□□ -0.54
COL4A6-208ENST00000538570 ABTB2Q8N961 1025 aa11.67□□□□□ -0.54
COL4A6-208ENST00000538570 BMP2KQ9NSY1 1161 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-208ENST00000538570 TMEM132EQ6IEE7 984 aa11.67□□□□□ -0.54
COL4A6-208ENST00000538570 CIZ1Q9ULV3 898 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-208ENST00000538570 TMCO5BA8MYB1 307 aa11.67□□□□□ -0.54
COL4A6-208ENST00000538570 SIL1Q9H173 461 aa11.67□□□□□ -0.54
COL4A6-208ENST00000538570 VGLL3A8MV65 326 aa11.67□□□□□ -0.54
COL4A6-208ENST00000538570 KIAA1328Q86T90 577 aa11.67□□□□□ -0.54
COL4A6-208ENST00000538570 EPB41L2O43491 1005 aaKnown RBP11.66□□□□□ -0.54
COL4A6-208ENST00000538570 JAKMIP3Q5VZ66 844 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 CHD1LQ86WJ1 897 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 TAF4BQ92750 862 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 BCAR3O75815 825 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 CCDC148Q8NFR7 591 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 PNISRQ8TF01 805 aaKnown RBP11.66□□□□□ -0.54
COL4A6-208ENST00000538570 TSR2Q969E8 191 aaKnown RBP11.66□□□□□ -0.54
COL4A6-208ENST00000538570 PPP6R1Q9UPN7 881 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 MCM4P33991 863 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 NCOA2Q15596 1464 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 ERICH3Q5RHP9 1530 aa11.66□□□□□ -0.54
COL4A6-208ENST00000538570 DESP17661 470 aa11.65□□□□□ -0.54
COL4A6-208ENST00000538570 CTNNA3Q9UI47 895 aa11.65□□□□□ -0.54
COL4A6-208ENST00000538570 TATP17735 454 aaPredicted RBP11.65□□□□□ -0.54
COL4A6-208ENST00000538570 KRT32Q14532 448 aa11.65□□□□□ -0.54
COL4A6-208ENST00000538570 MVPQ14764 893 aaKnown RBP11.65□□□□□ -0.54
COL4A6-208ENST00000538570 JAKMIP1Q96N16 626 aaKnown RBP11.65□□□□□ -0.54
COL4A6-208ENST00000538570 TMCO3Q6UWJ1 677 aa11.65□□□□□ -0.55
COL4A6-208ENST00000538570 FILIP1Q7Z7B0 1213 aa11.65□□□□□ -0.55
COL4A6-208ENST00000538570 WASF1Q92558 559 aa11.65□□□□□ -0.55
COL4A6-208ENST00000538570 EIF5P55010 431 aaKnown RBP11.64□□□□□ -0.55
COL4A6-208ENST00000538570 DDX11Q96FC9 970 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 ARHGAP29Q52LW3 1261 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 AACSQ86V21 672 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 WDR63Q8IWG1 891 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 UBXN4Q92575 508 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 GBP3Q9H0R5 595 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 SSBP05455 408 aaKnown RBP eCLIP11.64□□□□□ -0.55
COL4A6-208ENST00000538570 SARNPP82979 210 aaKnown RBP11.64□□□□□ -0.55
COL4A6-208ENST00000538570 PPP4R3BQ5MIZ7 849 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 ATF7IPQ6VMQ6 1270 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 ZNF397Q8NF99 534 aaPredicted RBP11.64□□□□□ -0.55
COL4A6-208ENST00000538570 UBAC1Q9BSL1 405 aa11.64□□□□□ -0.55
COL4A6-208ENST00000538570 CEP131Q9UPN4 1083 aa11.63□□□□□ -0.55
COL4A6-208ENST00000538570 MAP3K11Q16584 847 aa11.63□□□□□ -0.55
COL4A6-208ENST00000538570 PRDM2Q13029 1718 aa11.63□□□□□ -0.55
COL4A6-208ENST00000538570 FKBP4Q02790 459 aaKnown RBP eCLIP11.63□□□□□ -0.55
COL4A6-208ENST00000538570 KIF2AO00139 706 aaPredicted RBP11.63□□□□□ -0.55
COL4A6-208ENST00000538570 CABP4P57796 275 aa11.63□□□□□ -0.55
COL4A6-208ENST00000538570 AKNAQ7Z591 1439 aa11.63□□□□□ -0.55
COL4A6-208ENST00000538570 XPCQ01831 940 aaPredicted RBP11.62□□□□□ -0.55
COL4A6-208ENST00000538570 SLC26A8Q96RN1 970 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 SHTN1A0MZ66 631 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 GTF2F1P35269 517 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL4A6-208ENST00000538570 CWC27Q6UX04 472 aaKnown RBP11.62□□□□□ -0.55
COL4A6-208ENST00000538570 MPHOSPH8Q99549 860 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 CRACR2AQ9BSW2 395 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 SYNJ2O15056 1496 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 CFAP100Q494V2 611 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 CCDC91Q7Z6B0 441 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 NEBLO76041 1014 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 MPHOSPH10O00566 681 aaKnown RBP11.62□□□□□ -0.55
COL4A6-208ENST00000538570 ESCO1Q5FWF5 840 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 SULT6B1Q6IMI4 303 aa11.62□□□□□ -0.55
COL4A6-208ENST00000538570 MATR3P43243 847 aaKnown RBP eCLIP11.61□□□□□ -0.55
COL4A6-208ENST00000538570 SPDYE4A6NLX3 237 aa11.61□□□□□ -0.55
COL4A6-208ENST00000538570 ARAP1Q96P48 1450 aa11.61□□□□□ -0.55
COL4A6-208ENST00000538570 NF2P35240 595 aa11.61□□□□□ -0.55
COL4A6-208ENST00000538570 MRC2Q9UBG0 1479 aa11.61□□□□□ -0.55
COL4A6-208ENST00000538570 POLR3GO15318 223 aaPredicted RBP11.61□□□□□ -0.55
COL4A6-208ENST00000538570 CFAP70Q5T0N1 1121 aa11.61□□□□□ -0.55
COL4A6-208ENST00000538570 AFAP1Q8N556 730 aa11.61□□□□□ -0.55
COL4A6-208ENST00000538570 ZNF76P36508 570 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 MAP2K1Q02750 393 aaPredicted RBP11.6□□□□□ -0.55
COL4A6-208ENST00000538570 PRG4Q92954 1404 aaPredicted RBP11.6□□□□□ -0.55
COL4A6-208ENST00000538570 SRGAP3O43295 1099 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 ZSCAN12O43309 604 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 POTEJP0CG39 1038 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 MAP9Q49MG5 647 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 RBM28Q9NW13 759 aaKnown RBP11.6□□□□□ -0.55
COL4A6-208ENST00000538570 SPA17Q15506 151 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 IMMTQ16891 758 aaKnown RBP11.6□□□□□ -0.55
COL4A6-208ENST00000538570 MYL6BP14649 208 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 CETN2P41208 172 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 IFT140Q96RY7 1462 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 SYCE3A1L190 88 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 CASQ1P31415 396 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 PTPN14Q15678 1187 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 BCCIPQ9P287 314 aaKnown RBP eCLIP11.6□□□□□ -0.55
COL4A6-208ENST00000538570 SPG7Q9UQ90 795 aa11.6□□□□□ -0.55
COL4A6-208ENST00000538570 SYNJ1O43426 1573 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 CASTP20810 708 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms