RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 KCNQ4P56696 695 aa11.79□□□□□ -0.52
USP28-203ENST00000537490 AKT1S1Q96B36 256 aa11.79□□□□□ -0.52
USP28-203ENST00000537490 TIMELESSQ9UNS1 1208 aa11.79□□□□□ -0.52
USP28-203ENST00000537490 DCAF8L1A6NGE4 600 aa11.78□□□□□ -0.52
USP28-203ENST00000537490 SLC27A3Q5K4L6 730 aa11.78□□□□□ -0.52
USP28-203ENST00000537490 SYT17Q9BSW7 474 aa11.78□□□□□ -0.52
USP28-203ENST00000537490 PCGF6Q9BYE7 350 aa11.78□□□□□ -0.52
USP28-203ENST00000537490 FHDC1Q9C0D6 1143 aaPredicted RBP11.78□□□□□ -0.52
USP28-203ENST00000537490 NSD2O96028 1365 aa11.78□□□□□ -0.52
USP28-203ENST00000537490 FAM208AQ9UK61 1670 aaKnown RBP11.78□□□□□ -0.52
USP28-203ENST00000537490 BTAF1O14981 1849 aa11.77□□□□□ -0.52
USP28-203ENST00000537490 RAPGEF4Q8WZA2 1011 aa11.77□□□□□ -0.53
USP28-203ENST00000537490 EMILIN1Q9Y6C2 1016 aa11.77□□□□□ -0.53
USP28-203ENST00000537490 PAPPAQ13219 1627 aa11.77□□□□□ -0.53
USP28-203ENST00000537490 INSRP06213 1382 aa11.77□□□□□ -0.53
USP28-203ENST00000537490 KAT6BQ8WYB5 2073 aa11.77□□□□□ -0.53
USP28-203ENST00000537490 TATP17735 454 aaPredicted RBP11.76□□□□□ -0.53
USP28-203ENST00000537490 ARXQ96QS3 562 aa11.76□□□□□ -0.53
USP28-203ENST00000537490 CGNL1Q0VF96 1302 aa11.76□□□□□ -0.53
USP28-203ENST00000537490 NSD3Q9BZ95 1437 aa11.76□□□□□ -0.53
USP28-203ENST00000537490 MYOM1P52179 1685 aa11.75□□□□□ -0.53
USP28-203ENST00000537490 RGPD2P0DJD1 1756 aa11.75□□□□□ -0.53
USP28-203ENST00000537490 PNPLA7Q6ZV29 1317 aa11.75□□□□□ -0.53
USP28-203ENST00000537490 FLT4P35916 1363 aa11.75□□□□□ -0.53
USP28-203ENST00000537490 SMG6Q86US8 1419 aaKnown RBP11.75□□□□□ -0.53
USP28-203ENST00000537490 TFCP2L1Q9NZI6 479 aa11.74□□□□□ -0.53
USP28-203ENST00000537490 CCNL1Q9UK58 526 aaPredicted RBP11.74□□□□□ -0.53
USP28-203ENST00000537490 CLSPNQ9HAW4 1339 aa11.74□□□□□ -0.53
USP28-203ENST00000537490 KIF24Q5T7B8 1368 aa11.74□□□□□ -0.53
USP28-203ENST00000537490 PPM1GO15355 546 aaPredicted RBP11.73□□□□□ -0.53
USP28-203ENST00000537490 CYP27B1O15528 508 aa11.73□□□□□ -0.53
USP28-203ENST00000537490 SLC16A10Q8TF71 515 aa11.73□□□□□ -0.53
USP28-203ENST00000537490 POLR3GLQ9BT43 218 aa11.73□□□□□ -0.53
USP28-203ENST00000537490 PCDH11XQ9BZA7 1347 aa11.72□□□□□ -0.53
USP28-203ENST00000537490 PCDH11YQ9BZA8 1340 aa11.72□□□□□ -0.53
USP28-203ENST00000537490 SHANK3Q9BYB0 1731 aa11.72□□□□□ -0.53
USP28-203ENST00000537490 WASHC2AQ641Q2 1341 aa11.71□□□□□ -0.53
USP28-203ENST00000537490 MPRIPQ6WCQ1 1025 aa11.71□□□□□ -0.53
USP28-203ENST00000537490 EYA1Q99502 592 aa11.71□□□□□ -0.53
USP28-203ENST00000537490 POLKQ9UBT6 870 aa11.71□□□□□ -0.53
USP28-203ENST00000537490 DOT1LQ8TEK3 1739 aa11.71□□□□□ -0.54
USP28-203ENST00000537490 POLD1P28340 1107 aa11.7□□□□□ -0.54
USP28-203ENST00000537490 COL23A1Q86Y22 540 aaPredicted RBP11.7□□□□□ -0.54
USP28-203ENST00000537490 KIF20BQ96Q89 1820 aa11.7□□□□□ -0.54
USP28-203ENST00000537490 MAP3K5Q99683 1374 aa11.69□□□□□ -0.54
USP28-203ENST00000537490 HSPA5P11021 654 aaKnown RBP11.69□□□□□ -0.54
USP28-203ENST00000537490 TNNT2P45379 298 aaPredicted RBP11.69□□□□□ -0.54
USP28-203ENST00000537490 KLHL34Q8N239 644 aa11.69□□□□□ -0.54
USP28-203ENST00000537490 NCAPD2Q15021 1401 aa11.69□□□□□ -0.54
USP28-203ENST00000537490 EIF4G2P78344 907 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP28-203ENST00000537490 NKX1-1Q15270 411 aaPredicted RBP11.68□□□□□ -0.54
USP28-203ENST00000537490 PIGBQ92521 554 aa11.68□□□□□ -0.54
USP28-203ENST00000537490 LY75O60449 1722 aa11.68□□□□□ -0.54
USP28-203ENST00000537490 PALLDQ8WX93 1383 aa11.67□□□□□ -0.54
USP28-203ENST00000537490 EIF4A2Q14240 407 aaKnown RBP11.67□□□□□ -0.54
USP28-203ENST00000537490 PANK3Q9H999 370 aa11.67□□□□□ -0.54
USP28-203ENST00000537490 SPG7Q9UQ90 795 aa11.67□□□□□ -0.54
USP28-203ENST00000537490 GPR162Q16538 588 aa11.66□□□□□ -0.54
USP28-203ENST00000537490 MSL1Q68DK7 614 aa11.66□□□□□ -0.54
USP28-203ENST00000537490 ZNF784Q8NCA9 323 aaPredicted RBP11.66□□□□□ -0.54
USP28-203ENST00000537490 NLGN2Q8NFZ4 835 aa11.66□□□□□ -0.54
USP28-203ENST00000537490 SMARCC1Q92922 1105 aaPredicted RBP11.66□□□□□ -0.54
USP28-203ENST00000537490 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.66□□□□□ -0.54
USP28-203ENST00000537490 SMIM5Q71RC9 77 aa11.65□□□□□ -0.54
USP28-203ENST00000537490 AMIGO3Q86WK7 504 aa11.65□□□□□ -0.54
USP28-203ENST00000537490 CCER1Q8TC90 406 aaPredicted RBP11.65□□□□□ -0.54
USP28-203ENST00000537490 QSER1Q2KHR3 1735 aa11.65□□□□□ -0.54
USP28-203ENST00000537490 PHKG2P15735 406 aa11.64□□□□□ -0.55
USP28-203ENST00000537490 IFNL2Q8IZJ0 200 aa11.64□□□□□ -0.55
USP28-203ENST00000537490 PELP1Q8IZL8 1130 aaKnown RBP11.64□□□□□ -0.55
USP28-203ENST00000537490 TUBGCP6Q96RT7 1819 aa11.64□□□□□ -0.55
USP28-203ENST00000537490 LOC102724428A0A0B4J2F2 783 aa11.63□□□□□ -0.55
USP28-203ENST00000537490 HMGB2P26583 209 aaKnown RBP11.63□□□□□ -0.55
USP28-203ENST00000537490 SIK1P57059 783 aa11.63□□□□□ -0.55
USP28-203ENST00000537490 FLAD1Q8NFF5 587 aa11.63□□□□□ -0.55
USP28-203ENST00000537490 TMOD3Q9NYL9 352 aa11.63□□□□□ -0.55
USP28-203ENST00000537490 ASAP1Q9ULH1 1129 aa11.63□□□□□ -0.55
USP28-203ENST00000537490 COL24A1Q17RW2 1714 aa11.63□□□□□ -0.55
USP28-203ENST00000537490 LINC00116Q8NCU8 138 aa11.62□□□□□ -0.55
USP28-203ENST00000537490 AK7Q96M32 723 aa11.62□□□□□ -0.55
USP28-203ENST00000537490 PKD1L3Q7Z443 1732 aa11.62□□□□□ -0.55
USP28-203ENST00000537490 ANKRD26Q9UPS8 1709 aa11.62□□□□□ -0.55
USP28-203ENST00000537490 TOGARAM1Q9Y4F4 1720 aa11.62□□□□□ -0.55
USP28-203ENST00000537490 IGSF1Q8N6C5 1336 aa11.61□□□□□ -0.55
USP28-203ENST00000537490 MAP2P11137 1827 aaKnown RBP11.61□□□□□ -0.55
USP28-203ENST00000537490 PHF14O94880 888 aa11.61□□□□□ -0.55
USP28-203ENST00000537490 ITPK1Q13572 414 aa11.61□□□□□ -0.55
USP28-203ENST00000537490 MORC1Q86VD1 984 aa11.61□□□□□ -0.55
USP28-203ENST00000537490 ATG3Q9NT62 314 aa11.61□□□□□ -0.55
USP28-203ENST00000537490 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.6□□□□□ -0.55
USP28-203ENST00000537490 YBX3P16989 372 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP28-203ENST00000537490 ATP6V1AP38606 617 aa11.6□□□□□ -0.55
USP28-203ENST00000537490 C5P01031 1676 aa11.59□□□□□ -0.55
USP28-203ENST00000537490 ITGB4P16144 1822 aa11.59□□□□□ -0.55
USP28-203ENST00000537490 PLEKHO1Q53GL0 409 aaPredicted RBP11.59□□□□□ -0.55
USP28-203ENST00000537490 AEBP1Q8IUX7 1158 aa11.59□□□□□ -0.55
USP28-203ENST00000537490 CD2APQ9Y5K6 639 aa11.59□□□□□ -0.55
USP28-203ENST00000537490 C4BP0C0L5 1744 aa11.58□□□□□ -0.56
USP28-203ENST00000537490 ERVV-2B6SEH9 535 aa11.58□□□□□ -0.56
USP28-203ENST00000537490 SSFA2P28290 1259 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms