RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ATF3P18847 181 aa12.59□□□□□ -0.39
CLIP1-209ENST00000537178 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.59□□□□□ -0.394e-6■■□□□ 12.7
CLIP1-209ENST00000537178 GGNBP2Q9H3C7 697 aa12.59□□□□□ -0.39
CLIP1-209ENST00000537178 CYP46A1Q9Y6A2 500 aa12.59□□□□□ -0.39
CLIP1-209ENST00000537178 KDM4AO75164 1064 aa12.59□□□□□ -0.39
CLIP1-209ENST00000537178 USP8P40818 1118 aa12.59□□□□□ -0.39
CLIP1-209ENST00000537178 KLHL34Q8N239 644 aa12.59□□□□□ -0.39
CLIP1-209ENST00000537178 NACAP1Q9BZK3 213 aa12.59□□□□□ -0.39
CLIP1-209ENST00000537178 CBFA2T2O43439 604 aa12.58□□□□□ -0.39
CLIP1-209ENST00000537178 CCDC158Q5M9N0 1113 aa12.58□□□□□ -0.39
CLIP1-209ENST00000537178 WDR33Q9C0J8 1336 aaKnown RBP12.58□□□□□ -0.4
CLIP1-209ENST00000537178 SYNJ2O15056 1496 aa12.58□□□□□ -0.4
CLIP1-209ENST00000537178 KRT85P78386 507 aa12.58□□□□□ -0.4
CLIP1-209ENST00000537178 ENOX2Q16206 610 aaKnown RBP12.58□□□□□ -0.4
CLIP1-209ENST00000537178 NLRP6P59044 892 aa12.58□□□□□ -0.4
CLIP1-209ENST00000537178 IQCEQ6IPM2 695 aa12.58□□□□□ -0.4
CLIP1-209ENST00000537178 IQGAP1P46940 1657 aa12.58□□□□□ -0.4
CLIP1-209ENST00000537178 TNMDQ9H2S6 317 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 PRG4Q92954 1404 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-209ENST00000537178 GNAI2P04899 355 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 ME1P48163 572 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 SPC24Q8NBT2 197 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 BRD4O60885 1362 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-209ENST00000537178 MAGI2Q86UL8 1455 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 MAST1Q9Y2H9 1570 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 KIF6Q6ZMV9 814 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 INCENPQ9NQS7 918 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 CLASP1Q7Z460 1538 aa12.57□□□□□ -0.4
CLIP1-209ENST00000537178 CEBPZQ03701 1054 aaKnown RBP12.56□□□□□ -0.4
CLIP1-209ENST00000537178 TCP11L2Q8N4U5 519 aa12.56□□□□□ -0.4
CLIP1-209ENST00000537178 PLEKHO1Q53GL0 409 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-209ENST00000537178 BMP2KQ9NSY1 1161 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-209ENST00000537178 NOL7Q9UMY1 257 aaKnown RBP12.56□□□□□ -0.4
CLIP1-209ENST00000537178 PDE3AQ14432 1141 aa12.56□□□□□ -0.4
CLIP1-209ENST00000537178 TANGO6Q9C0B7 1094 aa12.56□□□□□ -0.4
CLIP1-209ENST00000537178 PDZRN3Q9UPQ7 1066 aa12.56□□□□□ -0.4
CLIP1-209ENST00000537178 TAX1BP1Q86VP1 789 aa12.56□□□□□ -0.4
CLIP1-209ENST00000537178 SOGA3Q5TF21 947 aa12.55□□□□□ -0.4
CLIP1-209ENST00000537178 GRIN2AQ12879 1464 aa12.55□□□□□ -0.4
CLIP1-209ENST00000537178 ZHX3Q9H4I2 956 aa12.55□□□□□ -0.4
CLIP1-209ENST00000537178 CNNM1Q9NRU3 951 aa12.55□□□□□ -0.4
CLIP1-209ENST00000537178 MTHFSP49914 203 aa12.55□□□□□ -0.4
CLIP1-209ENST00000537178 TTC39AQ5SRH9 613 aa12.55□□□□□ -0.4
CLIP1-209ENST00000537178 CEP57L1Q8IYX8 460 aa12.55□□□□□ -0.4
CLIP1-209ENST00000537178 IQGAP3Q86VI3 1631 aa12.54□□□□□ -0.4
CLIP1-209ENST00000537178 COL17A1Q9UMD9 1497 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-209ENST00000537178 SAMD9LQ8IVG5 1584 aa12.54□□□□□ -0.4
CLIP1-209ENST00000537178 PDIA4P13667 645 aaKnown RBP12.54□□□□□ -0.4
CLIP1-209ENST00000537178 DESP17661 470 aa12.54□□□□□ -0.4
CLIP1-209ENST00000537178 TWISTNBQ3B726 338 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-209ENST00000537178 PREX2Q70Z35 1606 aa12.54□□□□□ -0.4
CLIP1-209ENST00000537178 CDKL5O76039 1030 aa12.54□□□□□ -0.4
CLIP1-209ENST00000537178 ATP10AO60312 1499 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 CCDC57Q2TAC2 916 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 CENPHQ9H3R5 247 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 ADAMTS8Q9UP79 889 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 PRAG1Q86YV5 1406 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 LARP1BQ659C4 914 aaKnown RBP12.53□□□□□ -0.4
CLIP1-209ENST00000537178 ZSCAN25Q6NSZ9 544 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 FAM177BA6PVY3 158 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 PLB1Q6P1J6 1458 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 CCDC69A6NI79 296 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 ATP2B2Q01814 1243 aa12.53□□□□□ -0.4
CLIP1-209ENST00000537178 CCT4P50991 539 aaKnown RBP12.52□□□□□ -0.4
CLIP1-209ENST00000537178 EXOSC9Q06265 439 aaKnown RBP12.52□□□□□ -0.4
CLIP1-209ENST00000537178 CFAP45Q9UL16 551 aa12.52□□□□□ -0.4
CLIP1-209ENST00000537178 RBM10P98175 930 aaKnown RBP12.52□□□□□ -0.41
CLIP1-209ENST00000537178 LRRFIP2Q9Y608 721 aaKnown RBP12.52□□□□□ -0.41
CLIP1-209ENST00000537178 PRKAR2BP31323 418 aa12.52□□□□□ -0.41
CLIP1-209ENST00000537178 TAF4BQ92750 862 aa12.52□□□□□ -0.41
CLIP1-209ENST00000537178 BACH2Q9BYV9 841 aa12.52□□□□□ -0.41
CLIP1-209ENST00000537178 K7ELQ4 463 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-209ENST00000537178 BLOC1S2Q6QNY1 142 aa12.51□□□□□ -0.41
CLIP1-209ENST00000537178 ZSCAN31Q96LW9 406 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-209ENST00000537178 LRRCC1Q9C099 1032 aa12.51□□□□□ -0.41
CLIP1-209ENST00000537178 DCAF8L1A6NGE4 600 aa12.51□□□□□ -0.41
CLIP1-209ENST00000537178 GBP2P32456 591 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-209ENST00000537178 HDGFL1Q5TGJ6 251 aa12.51□□□□□ -0.41
CLIP1-209ENST00000537178 SRCIN1Q9C0H9 1055 aa12.51□□□□□ -0.41
CLIP1-209ENST00000537178 CTNNA3Q9UI47 895 aa12.51□□□□□ -0.41
CLIP1-209ENST00000537178 KDM2BQ8NHM5 1336 aa12.51□□□□□ -0.41
CLIP1-209ENST00000537178 RBM42Q9BTD8 480 aaKnown RBP12.51□□□□□ -0.41
CLIP1-209ENST00000537178 CIZ1Q9ULV3 898 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-209ENST00000537178 CETN2P41208 172 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 FAM177A1Q8N128 213 aaPredicted RBP12.5□□□□□ -0.41
CLIP1-209ENST00000537178 PDCL2Q8N4E4 241 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 CABP2Q9NPB3 220 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 FAM135AQ9P2D6 1515 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 MRC2Q9UBG0 1479 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 NUTM2GQ5VZR2 741 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 GBP3Q9H0R5 595 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 PPP6R1Q9UPN7 881 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 SMTNL1A8MU46 457 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 PLXNC1O60486 1568 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 NUP160Q12769 1436 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 EPB41L2O43491 1005 aaKnown RBP12.5□□□□□ -0.41
CLIP1-209ENST00000537178 STK3Q13188 491 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 ARHGAP29Q52LW3 1261 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 TAF3Q5VWG9 929 aa12.5□□□□□ -0.41
CLIP1-209ENST00000537178 SPATA32Q96LK8 384 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms