RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 ATF5Q9Y2D1 282 aaPredicted RBP15.77■□□□□ 0.12
CLSTN3-206ENST00000535668 SHANK3Q9BYB0 1731 aa15.77■□□□□ 0.11
CLSTN3-206ENST00000535668 INSRP06213 1382 aa15.76■□□□□ 0.11
CLSTN3-206ENST00000535668 PLEKHG2Q9H7P9 1386 aa15.76■□□□□ 0.11
CLSTN3-206ENST00000535668 TMF1P82094 1093 aa15.76■□□□□ 0.11
CLSTN3-206ENST00000535668 ARXQ96QS3 562 aa15.76■□□□□ 0.11
CLSTN3-206ENST00000535668 MEGF6O75095 1541 aa15.75■□□□□ 0.11
CLSTN3-206ENST00000535668 PNPLA7Q6ZV29 1317 aa15.74■□□□□ 0.11
CLSTN3-206ENST00000535668 AMPHP49418 695 aa15.74■□□□□ 0.11
CLSTN3-206ENST00000535668 NBPF6Q5VWK0 638 aa15.74■□□□□ 0.11
CLSTN3-206ENST00000535668 NBPF4Q96M43 638 aa15.74■□□□□ 0.11
CLSTN3-206ENST00000535668 GOLGB1Q14789 3259 aaKnown RBP15.74■□□□□ 0.11
CLSTN3-206ENST00000535668 USP47Q96K76 1375 aa15.74■□□□□ 0.11
CLSTN3-206ENST00000535668 CHD4Q14839 1912 aa15.73■□□□□ 0.11
CLSTN3-206ENST00000535668 PRIM1P49642 420 aaKnown RBP15.73■□□□□ 0.11
CLSTN3-206ENST00000535668 FLT4P35916 1363 aa15.73■□□□□ 0.11
CLSTN3-206ENST00000535668 CLSPNQ9HAW4 1339 aa15.72■□□□□ 0.11
CLSTN3-206ENST00000535668 DDX54Q8TDD1 881 aaKnown RBP15.72■□□□□ 0.11
CLSTN3-206ENST00000535668 SMG6Q86US8 1419 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-206ENST00000535668 NKX1-1Q15270 411 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-206ENST00000535668 ZNF784Q8NCA9 323 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-206ENST00000535668 DOT1LQ8TEK3 1739 aa15.69■□□□□ 0.1
CLSTN3-206ENST00000535668 FBLN1P23142 703 aa15.69■□□□□ 0.1
CLSTN3-206ENST00000535668 CARD14Q9BXL6 1004 aa15.69■□□□□ 0.1
CLSTN3-206ENST00000535668 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.69■□□□□ 0.1
CLSTN3-206ENST00000535668 RGPD2P0DJD1 1756 aa15.69■□□□□ 0.1
CLSTN3-206ENST00000535668 PCDH11XQ9BZA7 1347 aa15.68■□□□□ 0.1
CLSTN3-206ENST00000535668 PCDH11YQ9BZA8 1340 aa15.68■□□□□ 0.1
CLSTN3-206ENST00000535668 ANKRD26Q9UPS8 1709 aa15.68■□□□□ 0.1
CLSTN3-206ENST00000535668 RRS1Q15050 365 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-206ENST00000535668 RAPGEF4Q8WZA2 1011 aa15.68■□□□□ 0.1
CLSTN3-206ENST00000535668 LTV1Q96GA3 475 aaPredicted RBP15.68■□□□□ 0.1
CLSTN3-206ENST00000535668 POLD1P28340 1107 aa15.67■□□□□ 0.1
CLSTN3-206ENST00000535668 TRIM26Q12899 539 aaPredicted RBP15.67■□□□□ 0.1
CLSTN3-206ENST00000535668 HSP90AB2PQ58FF8 381 aa15.67■□□□□ 0.1
CLSTN3-206ENST00000535668 FLAD1Q8NFF5 587 aa15.67■□□□□ 0.1
CLSTN3-206ENST00000535668 GGNBP2Q9H3C7 697 aa15.67■□□□□ 0.1
CLSTN3-206ENST00000535668 TFCP2L1Q9NZI6 479 aa15.67■□□□□ 0.1
CLSTN3-206ENST00000535668 WASHC2AQ641Q2 1341 aa15.67■□□□□ 0.1
CLSTN3-206ENST00000535668 TUBGCP6Q96RT7 1819 aa15.66■□□□□ 0.1
CLSTN3-206ENST00000535668 CCNL1Q9UK58 526 aaPredicted RBP15.66■□□□□ 0.1
CLSTN3-206ENST00000535668 PKD1L3Q7Z443 1732 aa15.65■□□□□ 0.1
CLSTN3-206ENST00000535668 CYP27B1O15528 508 aa15.65■□□□□ 0.1
CLSTN3-206ENST00000535668 TATP17735 454 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-206ENST00000535668 KIF20BQ96Q89 1820 aa15.64■□□□□ 0.09
CLSTN3-206ENST00000535668 COL23A1Q86Y22 540 aaPredicted RBP15.63■□□□□ 0.09
CLSTN3-206ENST00000535668 SMARCC1Q92922 1105 aaPredicted RBP15.63■□□□□ 0.09
CLSTN3-206ENST00000535668 SYTL4Q96C24 671 aaPredicted RBP15.62■□□□□ 0.09
CLSTN3-206ENST00000535668 CD2APQ9Y5K6 639 aa15.62■□□□□ 0.09
CLSTN3-206ENST00000535668 TAF1LQ8IZX4 1826 aa15.61■□□□□ 0.09
CLSTN3-206ENST00000535668 PALLDQ8WX93 1383 aa15.61■□□□□ 0.09
CLSTN3-206ENST00000535668 C5P01031 1676 aa15.6■□□□□ 0.09
CLSTN3-206ENST00000535668 NSD3Q9BZ95 1437 aa15.6■□□□□ 0.09
CLSTN3-206ENST00000535668 MAP2P11137 1827 aaKnown RBP15.6■□□□□ 0.09
CLSTN3-206ENST00000535668 GRIN3BO60391 1043 aa15.6■□□□□ 0.09
CLSTN3-206ENST00000535668 KCNQ4P56696 695 aa15.59■□□□□ 0.09
CLSTN3-206ENST00000535668 EMILIN1Q9Y6C2 1016 aa15.59■□□□□ 0.09
CLSTN3-206ENST00000535668 TOGARAM1Q9Y4F4 1720 aa15.58■□□□□ 0.08
CLSTN3-206ENST00000535668 USHBP1Q8N6Y0 703 aa15.58■□□□□ 0.08
CLSTN3-206ENST00000535668 POLKQ9UBT6 870 aa15.58■□□□□ 0.08
CLSTN3-206ENST00000535668 SPG7Q9UQ90 795 aa15.58■□□□□ 0.08
CLSTN3-206ENST00000535668 ZNF831Q5JPB2 1677 aa15.57■□□□□ 0.08
CLSTN3-206ENST00000535668 ITGB4P16144 1822 aa15.57■□□□□ 0.08
CLSTN3-206ENST00000535668 GPR162Q16538 588 aa15.57■□□□□ 0.08
CLSTN3-206ENST00000535668 PIGBQ92521 554 aa15.57■□□□□ 0.08
CLSTN3-206ENST00000535668 EYA1Q99502 592 aa15.57■□□□□ 0.08
CLSTN3-206ENST00000535668 SSFA2P28290 1259 aa15.56■□□□□ 0.08
CLSTN3-206ENST00000535668 C1QTNF8P60827 252 aa15.56■□□□□ 0.08
CLSTN3-206ENST00000535668 NLGN2Q8NFZ4 835 aa15.56■□□□□ 0.08
CLSTN3-206ENST00000535668 C4BP0C0L5 1744 aa15.56■□□□□ 0.08
CLSTN3-206ENST00000535668 UBR3Q6ZT12 1888 aa15.55■□□□□ 0.08
CLSTN3-206ENST00000535668 MPRIPQ6WCQ1 1025 aa15.54■□□□□ 0.08
CLSTN3-206ENST00000535668 IFNL2Q8IZJ0 200 aa15.54■□□□□ 0.08
CLSTN3-206ENST00000535668 IGSF1Q8N6C5 1336 aa15.53■□□□□ 0.08
CLSTN3-206ENST00000535668 LOC102724428A0A0B4J2F2 783 aa15.53■□□□□ 0.08
CLSTN3-206ENST00000535668 PHKG2P15735 406 aa15.53■□□□□ 0.08
CLSTN3-206ENST00000535668 YBX3P16989 372 aaKnown RBP eCLIP15.53■□□□□ 0.08
CLSTN3-206ENST00000535668 SIK1P57059 783 aa15.53■□□□□ 0.08
CLSTN3-206ENST00000535668 ERVV-2B6SEH9 535 aa15.52■□□□□ 0.08
CLSTN3-206ENST00000535668 ADCY9O60503 1353 aa15.51■□□□□ 0.07
CLSTN3-206ENST00000535668 KDRP35968 1356 aa15.51■□□□□ 0.07
CLSTN3-206ENST00000535668 CEP350Q5VT06 3117 aa15.51■□□□□ 0.07
CLSTN3-206ENST00000535668 AMIGO3Q86WK7 504 aa15.51■□□□□ 0.07
CLSTN3-206ENST00000535668 EIF4A2Q14240 407 aaKnown RBP15.5■□□□□ 0.07
CLSTN3-206ENST00000535668 RC3H1Q5TC82 1133 aaKnown RBP15.5■□□□□ 0.07
CLSTN3-206ENST00000535668 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.49■□□□□ 0.07
CLSTN3-206ENST00000535668 HSP90AB1P08238 724 aaKnown RBP15.49■□□□□ 0.07
CLSTN3-206ENST00000535668 AK7Q96M32 723 aa15.49■□□□□ 0.07
CLSTN3-206ENST00000535668 TMOD3Q9NYL9 352 aa15.49■□□□□ 0.07
CLSTN3-206ENST00000535668 ADRA2BP18089 450 aa15.48■□□□□ 0.07
CLSTN3-206ENST00000535668 AMOTQ4VCS5 1084 aa15.48■□□□□ 0.07
CLSTN3-206ENST00000535668 LINC00116Q8NCU8 138 aa15.48■□□□□ 0.07
CLSTN3-206ENST00000535668 DCAF5Q96JK2 942 aa15.48■□□□□ 0.07
CLSTN3-206ENST00000535668 ATG3Q9NT62 314 aa15.48■□□□□ 0.07
CLSTN3-206ENST00000535668 ITPK1Q13572 414 aa15.47■□□□□ 0.07
CLSTN3-206ENST00000535668 ASAP1Q9ULH1 1129 aa15.47■□□□□ 0.07
CLSTN3-206ENST00000535668 CICQ96RK0 1608 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-206ENST00000535668 KIF13BQ9NQT8 1826 aa15.46■□□□□ 0.07
CLSTN3-206ENST00000535668 EIF4G2P78344 907 aaKnown RBP eCLIP15.46■□□□□ 0.071e-6■■■■■ 27.1
CLSTN3-206ENST00000535668 MSH5O43196 834 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms