RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 TNS2Q63HR2 1409 aa33.4■■■□□ 2.94
USP48-214ENST00000532737 TATP17735 454 aaPredicted RBP33.4■■■□□ 2.94
USP48-214ENST00000532737 MARCH10Q8NA82 808 aaPredicted RBP33.4■■■□□ 2.94
USP48-214ENST00000532737 BAG6P46379 1132 aa33.39■■■□□ 2.94
USP48-214ENST00000532737 OVOS2A0A0G2JMS6 1433 aa33.38■■■□□ 2.93
USP48-214ENST00000532737 AEBP1Q8IUX7 1158 aa33.38■■■□□ 2.93
USP48-214ENST00000532737 ZCRB1Q8TBF4 217 aaKnown RBP33.37■■■□□ 2.93
USP48-214ENST00000532737 SULT6B1Q6IMI4 303 aa33.36■■■□□ 2.93
USP48-214ENST00000532737 MYBBP1AQ9BQG0 1328 aaKnown RBP33.35■■■□□ 2.93
USP48-214ENST00000532737 FAM196AQ6ZSG2 479 aa33.34■■■□□ 2.93
USP48-214ENST00000532737 DDX54Q8TDD1 881 aaKnown RBP33.33■■■□□ 2.93
USP48-214ENST00000532737 U2SURPO15042 1029 aaKnown RBP33.32■■■□□ 2.92
USP48-214ENST00000532737 KDRP35968 1356 aa33.31■■■□□ 2.92
USP48-214ENST00000532737 HMOX1P09601 288 aa33.3■■■□□ 2.92
USP48-214ENST00000532737 EN1Q05925 392 aaPredicted RBP33.29■■■□□ 2.92
USP48-214ENST00000532737 NUDCQ9Y266 331 aa33.28■■■□□ 2.92
USP48-214ENST00000532737 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.26■■■□□ 2.912e-8■■□□□ 14.4
USP48-214ENST00000532737 PSDA5PKW4 1024 aaPredicted RBP33.25■■■□□ 2.91
USP48-214ENST00000532737 SPG7Q9UQ90 795 aa33.25■■■□□ 2.91
USP48-214ENST00000532737 BCL9O00512 1426 aa33.24■■■□□ 2.91
USP48-214ENST00000532737 CYP27B1O15528 508 aa33.23■■■□□ 2.91
USP48-214ENST00000532737 TRIM37O94972 964 aa33.23■■■□□ 2.91
USP48-214ENST00000532737 PCDH11XQ9BZA7 1347 aa33.23■■■□□ 2.91
USP48-214ENST00000532737 PCDH11YQ9BZA8 1340 aa33.23■■■□□ 2.91
USP48-214ENST00000532737 SHANK3Q9BYB0 1731 aa33.22■■■□□ 2.91
USP48-214ENST00000532737 ANP32CO43423 234 aa33.22■■■□□ 2.91
USP48-214ENST00000532737 U2AF1L5P0DN76 240 aaPredicted RBP33.22■■■□□ 2.91
USP48-214ENST00000532737 U2AF1Q01081 240 aaKnown RBP eCLIP33.22■■■□□ 2.913e-7■■■□□ 15.3
USP48-214ENST00000532737 PLEKHG2Q9H7P9 1386 aa33.21■■■□□ 2.91
USP48-214ENST00000532737 PLEKHO1Q53GL0 409 aaPredicted RBP33.21■■■□□ 2.91
USP48-214ENST00000532737 PKD1L3Q7Z443 1732 aa33.2■■■□□ 2.91
USP48-214ENST00000532737 RREB1Q92766 1687 aa33.2■■■□□ 2.9
USP48-214ENST00000532737 AMOTQ4VCS5 1084 aa33.18■■■□□ 2.9
USP48-214ENST00000532737 PTF1AQ7RTS3 328 aa33.18■■■□□ 2.9
USP48-214ENST00000532737 EZH2Q15910 746 aaKnown RBP33.17■■■□□ 2.9
USP48-214ENST00000532737 ACSBG1Q96GR2 724 aa33.16■■■□□ 2.9
USP48-214ENST00000532737 CAMKK2Q96RR4 588 aa33.16■■■□□ 2.9
USP48-214ENST00000532737 RSPH6AQ9H0K4 717 aa33.16■■■□□ 2.9
USP48-214ENST00000532737 PHKG2P15735 406 aa33.15■■■□□ 2.9
USP48-214ENST00000532737 NUP188Q5SRE5 1749 aa33.14■■■□□ 2.9
USP48-214ENST00000532737 KCNQ2O43526 872 aa33.14■■■□□ 2.9
USP48-214ENST00000532737 ZNF530Q6P9A1 599 aaPredicted RBP33.14■■■□□ 2.9
USP48-214ENST00000532737 IFNL2Q8IZJ0 200 aa33.14■■■□□ 2.9
USP48-214ENST00000532737 PRKAR2BP31323 418 aa33.13■■■□□ 2.89
USP48-214ENST00000532737 BCL11BQ9C0K0 894 aaPredicted RBP33.13■■■□□ 2.89
USP48-214ENST00000532737 FCHSD2O94868 740 aa33.12■■■□□ 2.89
USP48-214ENST00000532737 NKX1-1Q15270 411 aaPredicted RBP33.12■■■□□ 2.89
USP48-214ENST00000532737 R3HDM1Q15032 1099 aaKnown RBP33.11■■■□□ 2.89
USP48-214ENST00000532737 SBF2Q86WG5 1849 aa33.1■■■□□ 2.89
USP48-214ENST00000532737 CCDC184Q52MB2 194 aa33.1■■■□□ 2.89
USP48-214ENST00000532737 MTHFSDQ2M296 383 aaKnown RBP33.09■■■□□ 2.89
USP48-214ENST00000532737 PHACTR3Q96KR7 559 aa33.09■■■□□ 2.89
USP48-214ENST00000532737 APBA3O96018 575 aa33.08■■■□□ 2.89
USP48-214ENST00000532737 PRIM1P49642 420 aaKnown RBP33.08■■■□□ 2.89
USP48-214ENST00000532737 C1orf141Q5JVX7 400 aa33.05■■■□□ 2.88
USP48-214ENST00000532737 SYTL4Q96C24 671 aaPredicted RBP33.04■■■□□ 2.88
USP48-214ENST00000532737 NHSQ6T4R5 1651 aa33.03■■■□□ 2.88
USP48-214ENST00000532737 HSP90AB1P08238 724 aaKnown RBP33.02■■■□□ 2.88
USP48-214ENST00000532737 AKAP4Q5JQC9 854 aa33.02■■■□□ 2.88
USP48-214ENST00000532737 WDR43Q15061 677 aaKnown RBP eCLIP33.01■■■□□ 2.87
USP48-214ENST00000532737 PLEKHF1Q96S99 279 aa33.01■■■□□ 2.87
USP48-214ENST00000532737 DOT1LQ8TEK3 1739 aa33.01■■■□□ 2.87
USP48-214ENST00000532737 RGPD3A6NKT7 1758 aaPredicted RBP33.01■■■□□ 2.87
USP48-214ENST00000532737 RGPD4Q7Z3J3 1758 aa33.01■■■□□ 2.87
USP48-214ENST00000532737 MPRIPQ6WCQ1 1025 aa33■■■□□ 2.87
USP48-214ENST00000532737 GAS2L2Q8NHY3 880 aa33■■■□□ 2.87
USP48-214ENST00000532737 DCAF5Q96JK2 942 aa33■■■□□ 2.87
USP48-214ENST00000532737 KAT6BQ8WYB5 2073 aa33■■■□□ 2.87
USP48-214ENST00000532737 KDM6AO15550 1401 aaPredicted RBP32.98■■■□□ 2.87
USP48-214ENST00000532737 ADAMTS8Q9UP79 889 aa32.98■■■□□ 2.87
USP48-214ENST00000532737 TOGARAM1Q9Y4F4 1720 aa32.97■■■□□ 2.87
USP48-214ENST00000532737 MRS2Q9HD23 443 aa32.96■■■□□ 2.87
USP48-214ENST00000532737 PLSCR1O15162 318 aa32.95■■■□□ 2.87
USP48-214ENST00000532737 PNNQ9H307 717 aaKnown RBP32.95■■■□□ 2.87
USP48-214ENST00000532737 DIEXFQ68CQ4 756 aaKnown RBP32.94■■■□□ 2.86
USP48-214ENST00000532737 PIGBQ92521 554 aa32.94■■■□□ 2.86
USP48-214ENST00000532737 LGR6Q9HBX8 967 aa32.94■■■□□ 2.86
USP48-214ENST00000532737 ERVV-2B6SEH9 535 aa32.93■■■□□ 2.86
USP48-214ENST00000532737 GNAT3A8MTJ3 354 aa32.92■■■□□ 2.86
USP48-214ENST00000532737 NEFMP07197 916 aa32.92■■■□□ 2.86
USP48-214ENST00000532737 MAP3K5Q99683 1374 aa32.92■■■□□ 2.86
USP48-214ENST00000532737 BTAF1O14981 1849 aa32.91■■■□□ 2.86
USP48-214ENST00000532737 RNMTO43148 476 aaKnown RBP32.91■■■□□ 2.86
USP48-214ENST00000532737 TMOD3Q9NYL9 352 aa32.91■■■□□ 2.86
USP48-214ENST00000532737 CCDC146Q8IYE0 955 aa32.9■■■□□ 2.86
USP48-214ENST00000532737 PNISRQ8TF01 805 aaKnown RBP32.9■■■□□ 2.86
USP48-214ENST00000532737 MAPK8IP3Q9UPT6 1336 aa32.89■■■□□ 2.86
USP48-214ENST00000532737 CABP4P57796 275 aa32.89■■■□□ 2.86
USP48-214ENST00000532737 PROM2Q8N271 834 aa32.89■■■□□ 2.86
USP48-214ENST00000532737 IL17REQ8NFR9 667 aa32.88■■■□□ 2.85
USP48-214ENST00000532737 ITGB4P16144 1822 aa32.86■■■□□ 2.85
USP48-214ENST00000532737 NFE2L2Q16236 605 aa32.86■■■□□ 2.85
USP48-214ENST00000532737 NFATC2IPQ8NCF5 419 aa32.86■■■□□ 2.85
USP48-214ENST00000532737 NBPF14Q5TI25 921 aa32.85■■■□□ 2.85
USP48-214ENST00000532737 RUNDC1Q96C34 613 aa32.85■■■□□ 2.85
USP48-214ENST00000532737 TXNRD1Q16881 649 aa32.84■■■□□ 2.85
USP48-214ENST00000532737 SLC52A2Q9HAB3 445 aa32.83■■■□□ 2.85
USP48-214ENST00000532737 ADAMTS7Q9UKP4 1686 aa32.82■■■□□ 2.84
USP48-214ENST00000532737 ASAP1Q9ULH1 1129 aa32.82■■■□□ 2.84
USP48-214ENST00000532737 SCN11AQ9UI33 1791 aa32.82■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms