RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LY75O60449 1722 aa15.86■□□□□ 0.13
VPS28-214ENST00000531032 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
VPS28-214ENST00000531032 NBPF6Q5VWK0 638 aa15.86■□□□□ 0.13
VPS28-214ENST00000531032 ZCRB1Q8TBF4 217 aaKnown RBP15.86■□□□□ 0.13
VPS28-214ENST00000531032 NBPF4Q96M43 638 aa15.86■□□□□ 0.13
VPS28-214ENST00000531032 KIF24Q5T7B8 1368 aa15.86■□□□□ 0.13
VPS28-214ENST00000531032 SMG6Q86US8 1419 aaKnown RBP15.85■□□□□ 0.13
VPS28-214ENST00000531032 AKT1S1Q96B36 256 aa15.85■□□□□ 0.13
VPS28-214ENST00000531032 CGNL1Q0VF96 1302 aa15.85■□□□□ 0.13
VPS28-214ENST00000531032 INSRP06213 1382 aa15.85■□□□□ 0.13
VPS28-214ENST00000531032 PRIM1P49642 420 aaKnown RBP15.84■□□□□ 0.13
VPS28-214ENST00000531032 FHDC1Q9C0D6 1143 aaPredicted RBP15.84■□□□□ 0.13
VPS28-214ENST00000531032 TIMELESSQ9UNS1 1208 aa15.84■□□□□ 0.13
VPS28-214ENST00000531032 FLT4P35916 1363 aa15.84■□□□□ 0.13
VPS28-214ENST00000531032 TUBGCP6Q96RT7 1819 aa15.83■□□□□ 0.12
VPS28-214ENST00000531032 SYTL4Q96C24 671 aaPredicted RBP15.83■□□□□ 0.12
VPS28-214ENST00000531032 SYT17Q9BSW7 474 aa15.83■□□□□ 0.12
VPS28-214ENST00000531032 CARD14Q9BXL6 1004 aa15.83■□□□□ 0.12
VPS28-214ENST00000531032 NSD3Q9BZ95 1437 aa15.83■□□□□ 0.12
VPS28-214ENST00000531032 COL24A1Q17RW2 1714 aa15.82■□□□□ 0.12
VPS28-214ENST00000531032 HSP90AB2PQ58FF8 381 aa15.82■□□□□ 0.12
VPS28-214ENST00000531032 USHBP1Q8N6Y0 703 aa15.82■□□□□ 0.12
VPS28-214ENST00000531032 MAP3K5Q99683 1374 aa15.82■□□□□ 0.12
VPS28-214ENST00000531032 ANKRD26Q9UPS8 1709 aa15.82■□□□□ 0.12
VPS28-214ENST00000531032 RAPGEF4Q8WZA2 1011 aa15.81■□□□□ 0.12
VPS28-214ENST00000531032 ARXQ96QS3 562 aa15.81■□□□□ 0.12
VPS28-214ENST00000531032 CLSPNQ9HAW4 1339 aa15.81■□□□□ 0.12
VPS28-214ENST00000531032 PNPLA7Q6ZV29 1317 aa15.8■□□□□ 0.12
VPS28-214ENST00000531032 SLC16A10Q8TF71 515 aa15.8■□□□□ 0.12
VPS28-214ENST00000531032 UTRNP46939 3433 aa15.8■□□□□ 0.12
VPS28-214ENST00000531032 NCAPD2Q15021 1401 aa15.79■□□□□ 0.12
VPS28-214ENST00000531032 TATP17735 454 aaPredicted RBP15.79■□□□□ 0.12
VPS28-214ENST00000531032 KCNQ4P56696 695 aa15.79■□□□□ 0.12
VPS28-214ENST00000531032 PCDH11XQ9BZA7 1347 aa15.78■□□□□ 0.12
VPS28-214ENST00000531032 PCDH11YQ9BZA8 1340 aa15.78■□□□□ 0.12
VPS28-214ENST00000531032 PKD1L3Q7Z443 1732 aa15.78■□□□□ 0.12
VPS28-214ENST00000531032 EMILIN1Q9Y6C2 1016 aa15.78■□□□□ 0.12
VPS28-214ENST00000531032 TFCP2L1Q9NZI6 479 aa15.77■□□□□ 0.12
VPS28-214ENST00000531032 CCNL1Q9UK58 526 aaPredicted RBP15.77■□□□□ 0.12
VPS28-214ENST00000531032 TOGARAM1Q9Y4F4 1720 aa15.76■□□□□ 0.11
VPS28-214ENST00000531032 C5P01031 1676 aa15.76■□□□□ 0.11
VPS28-214ENST00000531032 WASHC2AQ641Q2 1341 aa15.74■□□□□ 0.11
VPS28-214ENST00000531032 MAP2P11137 1827 aaKnown RBP15.74■□□□□ 0.11
VPS28-214ENST00000531032 CYP27B1O15528 508 aa15.74■□□□□ 0.11
VPS28-214ENST00000531032 POLD1P28340 1107 aa15.74■□□□□ 0.11
VPS28-214ENST00000531032 ITGB4P16144 1822 aa15.73■□□□□ 0.11
VPS28-214ENST00000531032 CHD4Q14839 1912 aa15.73■□□□□ 0.11
VPS28-214ENST00000531032 PALLDQ8WX93 1383 aa15.73■□□□□ 0.11
VPS28-214ENST00000531032 TAF1LQ8IZX4 1826 aa15.73■□□□□ 0.11
VPS28-214ENST00000531032 PPM1GO15355 546 aaPredicted RBP15.71■□□□□ 0.11
VPS28-214ENST00000531032 NKX1-1Q15270 411 aaPredicted RBP15.71■□□□□ 0.11
VPS28-214ENST00000531032 PCGF6Q9BYE7 350 aa15.71■□□□□ 0.11
VPS28-214ENST00000531032 POLKQ9UBT6 870 aa15.71■□□□□ 0.11
VPS28-214ENST00000531032 HMGB2P26583 209 aaKnown RBP15.7■□□□□ 0.1
VPS28-214ENST00000531032 MPRIPQ6WCQ1 1025 aa15.7■□□□□ 0.1
VPS28-214ENST00000531032 COL23A1Q86Y22 540 aaPredicted RBP15.7■□□□□ 0.1
VPS28-214ENST00000531032 EYA1Q99502 592 aa15.7■□□□□ 0.1
VPS28-214ENST00000531032 ZNF784Q8NCA9 323 aaPredicted RBP15.69■□□□□ 0.1
VPS28-214ENST00000531032 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.69■□□□□ 0.1
VPS28-214ENST00000531032 SPG7Q9UQ90 795 aa15.69■□□□□ 0.1
VPS28-214ENST00000531032 C4BP0C0L5 1744 aa15.68■□□□□ 0.1
VPS28-214ENST00000531032 SMARCC1Q92922 1105 aaPredicted RBP15.68■□□□□ 0.1
VPS28-214ENST00000531032 PLEKHG2Q9H7P9 1386 aa15.67■□□□□ 0.1
VPS28-214ENST00000531032 EIF4G2P78344 907 aaKnown RBP eCLIP15.67■□□□□ 0.1
VPS28-214ENST00000531032 KLHL34Q8N239 644 aa15.67■□□□□ 0.1
VPS28-214ENST00000531032 PIGBQ92521 554 aa15.67■□□□□ 0.1
VPS28-214ENST00000531032 GOLGB1Q14789 3259 aaKnown RBP15.67■□□□□ 0.1
VPS28-214ENST00000531032 MSH5O43196 834 aa15.66■□□□□ 0.1
VPS28-214ENST00000531032 GPR162Q16538 588 aa15.66■□□□□ 0.1
VPS28-214ENST00000531032 FLAD1Q8NFF5 587 aa15.66■□□□□ 0.1
VPS28-214ENST00000531032 NLGN2Q8NFZ4 835 aa15.66■□□□□ 0.1
VPS28-214ENST00000531032 POLR3GLQ9BT43 218 aa15.66■□□□□ 0.1
VPS28-214ENST00000531032 UBR3Q6ZT12 1888 aa15.65■□□□□ 0.1
VPS28-214ENST00000531032 HSPA5P11021 654 aaKnown RBP15.65■□□□□ 0.1
VPS28-214ENST00000531032 EIF4A2Q14240 407 aaKnown RBP15.65■□□□□ 0.1
VPS28-214ENST00000531032 MSL1Q68DK7 614 aa15.64■□□□□ 0.09
VPS28-214ENST00000531032 PHKG2P15735 406 aa15.63■□□□□ 0.09
VPS28-214ENST00000531032 TNNT2P45379 298 aaPredicted RBP15.63■□□□□ 0.09
VPS28-214ENST00000531032 IFNL2Q8IZJ0 200 aa15.63■□□□□ 0.09
VPS28-214ENST00000531032 AK7Q96M32 723 aa15.63■□□□□ 0.09
VPS28-214ENST00000531032 IGSF1Q8N6C5 1336 aa15.63■□□□□ 0.09
VPS28-214ENST00000531032 LOC102724428A0A0B4J2F2 783 aa15.62■□□□□ 0.09
VPS28-214ENST00000531032 SIK1P57059 783 aa15.62■□□□□ 0.09
VPS28-214ENST00000531032 AMIGO3Q86WK7 504 aa15.62■□□□□ 0.09
VPS28-214ENST00000531032 PANK3Q9H999 370 aa15.62■□□□□ 0.09
VPS28-214ENST00000531032 TMOD3Q9NYL9 352 aa15.62■□□□□ 0.09
VPS28-214ENST00000531032 PELP1Q8IZL8 1130 aaKnown RBP15.6■□□□□ 0.09
VPS28-214ENST00000531032 LINC00116Q8NCU8 138 aa15.6■□□□□ 0.09
VPS28-214ENST00000531032 ASAP1Q9ULH1 1129 aa15.6■□□□□ 0.09
VPS28-214ENST00000531032 CD2APQ9Y5K6 639 aa15.6■□□□□ 0.09
VPS28-214ENST00000531032 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.59■□□□□ 0.09
VPS28-214ENST00000531032 YBX3P16989 372 aaKnown RBP eCLIP15.59■□□□□ 0.091e-7■□□□□ 9.8
VPS28-214ENST00000531032 SSFA2P28290 1259 aa15.59■□□□□ 0.09
VPS28-214ENST00000531032 ZNF831Q5JPB2 1677 aa15.59■□□□□ 0.09
VPS28-214ENST00000531032 PHF14O94880 888 aa15.58■□□□□ 0.08
VPS28-214ENST00000531032 ITPK1Q13572 414 aa15.58■□□□□ 0.08
VPS28-214ENST00000531032 CCER1Q8TC90 406 aaPredicted RBP15.58■□□□□ 0.08
VPS28-214ENST00000531032 ATG3Q9NT62 314 aa15.58■□□□□ 0.08
VPS28-214ENST00000531032 KDRP35968 1356 aa15.58■□□□□ 0.08
VPS28-214ENST00000531032 GRIN3BO60391 1043 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms