RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ACIN1Q9UKV3 1341 aaKnown RBP5.99□□□□□ -1.45
CD44-226ENST00000527889 MROH1Q8NDA8 1641 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 RNF17Q9BXT8 1623 aaKnown RBP5.99□□□□□ -1.45
CD44-226ENST00000527889 DIP2CQ9Y2E4 1556 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 ZNF518AQ6AHZ1 1483 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 AP1G2O75843 785 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 MFAP1P55081 439 aaKnown RBP5.99□□□□□ -1.45
CD44-226ENST00000527889 CSPP1Q1MSJ5 1256 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 RTL5Q5HYW3 569 aaPredicted RBP5.99□□□□□ -1.45
CD44-226ENST00000527889 RSPH4AQ5TD94 716 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 AFAP1Q8N556 730 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 SIN3AQ96ST3 1273 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 PRM3Q9NNZ6 103 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 HCSTQ9UBK5 93 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 MTMR7Q9Y216 660 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 SETD1AO15047 1707 aaKnown RBP5.99□□□□□ -1.45
CD44-226ENST00000527889 FAM135AQ9P2D6 1515 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 POGZQ7Z3K3 1410 aa5.99□□□□□ -1.45
CD44-226ENST00000527889 SPAG9O60271 1321 aaKnown RBP5.99□□□□□ -1.45
CD44-226ENST00000527889 IQSEC2Q5JU85 1478 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 RNF40O75150 1001 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 SLC10A3P09131 477 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 NDUFV2P19404 249 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 PDE4CQ08493 712 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 NEUROD1Q13562 356 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 POTEAQ6S8J7 498 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 NUTM1Q86Y26 1132 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 SULF1Q8IWU6 871 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 TSR3Q9UJK0 312 aaKnown RBP5.98□□□□□ -1.45
CD44-226ENST00000527889 PCDHB15Q9Y5E8 787 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 RTEL1-TNFRSF6BF6WH68 1400 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 PTPRTO14522 1441 aa5.98□□□□□ -1.45
CD44-226ENST00000527889 MAGI2Q86UL8 1455 aa5.97□□□□□ -1.45
CD44-226ENST00000527889 POLR1AO95602 1720 aaPredicted RBP5.97□□□□□ -1.45
CD44-226ENST00000527889 USP17L8P0C7I0 530 aa5.97□□□□□ -1.45
CD44-226ENST00000527889 ADAMTS19Q8TE59 1207 aa5.97□□□□□ -1.45
CD44-226ENST00000527889 PBXIP1Q96AQ6 731 aa5.97□□□□□ -1.45
CD44-226ENST00000527889 GJD4Q96KN9 370 aaPredicted RBP5.97□□□□□ -1.45
CD44-226ENST00000527889 MPHOSPH9Q99550 1183 aa5.97□□□□□ -1.45
CD44-226ENST00000527889 ZMYM4Q5VZL5 1548 aa5.97□□□□□ -1.45
CD44-226ENST00000527889 ERBINQ96RT1 1412 aa5.97□□□□□ -1.45
CD44-226ENST00000527889 ADAMTSL3P82987 1691 aa5.97□□□□□ -1.45
CD44-226ENST00000527889 TEX14Q8IWB6 1497 aa5.96□□□□□ -1.45
CD44-226ENST00000527889 CAMSAP1Q5T5Y3 1602 aa5.96□□□□□ -1.45
CD44-226ENST00000527889 NUP155O75694 1391 aa5.96□□□□□ -1.45
CD44-226ENST00000527889 MROH2AA6NES4 1674 aa5.96□□□□□ -1.46
CD44-226ENST00000527889 DDX11L8A8MPP1 907 aa5.96□□□□□ -1.46
CD44-226ENST00000527889 APLP1P51693 650 aa5.96□□□□□ -1.46
CD44-226ENST00000527889 SRPK2P78362 688 aaKnown RBP5.96□□□□□ -1.46
CD44-226ENST00000527889 SLF2Q8IX21 1173 aa5.96□□□□□ -1.46
CD44-226ENST00000527889 PRDM15P57071 1507 aaPredicted RBP5.95□□□□□ -1.46
CD44-226ENST00000527889 CLTCQ00610 1675 aaKnown RBP5.95□□□□□ -1.46
CD44-226ENST00000527889 ZC3H13Q5T200 1668 aaKnown RBP5.95□□□□□ -1.46
CD44-226ENST00000527889 GPR37L1O60883 481 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 RAPGEF3O95398 923 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 PPP4CP60510 307 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 CFAP70Q5T0N1 1121 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 HDGFL1Q5TGJ6 251 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 PRPF38BQ5VTL8 546 aaKnown RBP5.95□□□□□ -1.46
CD44-226ENST00000527889 VWDEQ8N2E2 1590 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 CABLES1Q8TDN4 633 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 IFT172Q9UG01 1749 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 NDUFB9Q9Y6M9 179 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 CLTCL1P53675 1640 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 A2MP01023 1474 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 MLH3Q9UHC1 1453 aa5.95□□□□□ -1.46
CD44-226ENST00000527889 ARHGEF40Q8TER5 1519 aa5.94□□□□□ -1.46
CD44-226ENST00000527889 ANKRD30BQ9BXX2 1392 aa5.94□□□□□ -1.46
CD44-226ENST00000527889 NUTM2BA6NNL0 878 aaPredicted RBP5.94□□□□□ -1.46
CD44-226ENST00000527889 NUTM2EB1AL46 878 aaPredicted RBP5.94□□□□□ -1.46
CD44-226ENST00000527889 PATL2C9JE40 543 aaKnown RBP5.94□□□□□ -1.46
CD44-226ENST00000527889 HDGFP51858 240 aaKnown RBP5.94□□□□□ -1.46
CD44-226ENST00000527889 NUTM2DQ5VT03 806 aaPredicted RBP5.94□□□□□ -1.46
CD44-226ENST00000527889 NUTM2AQ8IVF1 878 aaPredicted RBP5.94□□□□□ -1.46
CD44-226ENST00000527889 USTQ9Y2C2 406 aa5.94□□□□□ -1.46
CD44-226ENST00000527889 PREX1Q8TCU6 1659 aa5.94□□□□□ -1.46
CD44-226ENST00000527889 TONSLQ96HA7 1378 aa5.93□□□□□ -1.46
CD44-226ENST00000527889 YEATS2Q9ULM3 1422 aa5.93□□□□□ -1.46
CD44-226ENST00000527889 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.93□□□□□ -1.46
CD44-226ENST00000527889 BRD1O95696 1058 aa5.93□□□□□ -1.46
CD44-226ENST00000527889 RFX1P22670 979 aa5.93□□□□□ -1.46
CD44-226ENST00000527889 KCNA1Q09470 495 aa5.93□□□□□ -1.46
CD44-226ENST00000527889 FOXD4L5Q5VV16 416 aaPredicted RBP5.93□□□□□ -1.46
CD44-226ENST00000527889 FOXD4L4Q8WXT5 416 aaPredicted RBP5.93□□□□□ -1.46
CD44-226ENST00000527889 RPRD2Q5VT52 1461 aaKnown RBP5.93□□□□□ -1.46
CD44-226ENST00000527889 EFCAB6Q5THR3 1501 aa5.93□□□□□ -1.46
CD44-226ENST00000527889 FER1L4A9Z1Z3 1794 aa5.93□□□□□ -1.46
CD44-226ENST00000527889 PPLO60437 1756 aa5.93□□□□□ -1.46
CD44-226ENST00000527889 DHX29Q7Z478 1369 aaKnown RBP5.93□□□□□ -1.46
CD44-226ENST00000527889 KDM4AO75164 1064 aa5.92□□□□□ -1.46
CD44-226ENST00000527889 CFHP08603 1231 aa5.92□□□□□ -1.46
CD44-226ENST00000527889 WASHC4Q2M389 1173 aa5.92□□□□□ -1.46
CD44-226ENST00000527889 TRIM34Q9BYJ4 488 aa5.92□□□□□ -1.46
CD44-226ENST00000527889 ZBTB3Q9H5J0 574 aa5.92□□□□□ -1.46
CD44-226ENST00000527889 HMX1Q9NP08 348 aaPredicted RBP5.92□□□□□ -1.46
CD44-226ENST00000527889 STRCQ7RTU9 1775 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 SENP3-EIF4A1A0A087X0R7 540 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 KIF3BO15066 747 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 CSB-PGBD3P0DP91 1061 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 PIP4K2BP78356 416 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms