RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 USP54Q70EL1 1684 aa22.1■■□□□ 1.13
USH1C-205ENST00000527020 ANKRD45Q5TZF3 282 aa22.09■■□□□ 1.13
USH1C-205ENST00000527020 ANKARQ7Z5J8 1434 aa22.09■■□□□ 1.13
USH1C-205ENST00000527020 INTS3Q68E01 1043 aaKnown RBP22.08■■□□□ 1.13
USH1C-205ENST00000527020 FOXO3O43524 673 aa22.08■■□□□ 1.12
USH1C-205ENST00000527020 MTHFSDQ2M296 383 aaKnown RBP22.08■■□□□ 1.12
USH1C-205ENST00000527020 KCNA6P17658 529 aa22.07■■□□□ 1.12
USH1C-205ENST00000527020 IGSF1Q8N6C5 1336 aa22.07■■□□□ 1.12
USH1C-205ENST00000527020 BMP2KLQ5H9B9 411 aa22.06■■□□□ 1.12
USH1C-205ENST00000527020 SLKQ9H2G2 1235 aaPredicted RBP22.06■■□□□ 1.12
USH1C-205ENST00000527020 EYA1Q99502 592 aa22.06■■□□□ 1.12
USH1C-205ENST00000527020 HAP1P54257 671 aaPredicted RBP22.04■■□□□ 1.12
USH1C-205ENST00000527020 LRRC37A3O60309 1634 aa22.04■■□□□ 1.12
USH1C-205ENST00000527020 ATP10DQ9P241 1426 aa22.04■■□□□ 1.12
USH1C-205ENST00000527020 GSE1Q14687 1217 aa22.04■■□□□ 1.12
USH1C-205ENST00000527020 NWD1Q149M9 1564 aa22.03■■□□□ 1.12
USH1C-205ENST00000527020 AMPHP49418 695 aa22.03■■□□□ 1.12
USH1C-205ENST00000527020 MIS18AQ9NYP9 233 aa22.03■■□□□ 1.12
USH1C-205ENST00000527020 CHD2O14647 1828 aaKnown RBP22.02■■□□□ 1.12
USH1C-205ENST00000527020 NLRP6P59044 892 aa22.02■■□□□ 1.12
USH1C-205ENST00000527020 PTPRCP08575 1304 aa22.01■■□□□ 1.11
USH1C-205ENST00000527020 RBM25P49756 843 aaKnown RBP22.01■■□□□ 1.11
USH1C-205ENST00000527020 MSH6P52701 1360 aa22■■□□□ 1.11
USH1C-205ENST00000527020 DCTPP1Q9H773 170 aa22■■□□□ 1.11
USH1C-205ENST00000527020 HOXC9P31274 260 aa21.99■■□□□ 1.11
USH1C-205ENST00000527020 NUTM2GQ5VZR2 741 aa21.98■■□□□ 1.11
USH1C-205ENST00000527020 ANKRD44Q8N8A2 993 aa21.98■■□□□ 1.11
USH1C-205ENST00000527020 GAS2L2Q8NHY3 880 aa21.98■■□□□ 1.11
USH1C-205ENST00000527020 RTF1Q92541 710 aaKnown RBP21.98■■□□□ 1.11
USH1C-205ENST00000527020 TSPYL4Q9UJ04 414 aa21.98■■□□□ 1.11
USH1C-205ENST00000527020 RTL1A6NKG5 1358 aa21.98■■□□□ 1.11
USH1C-205ENST00000527020 SLC4A2P04920 1241 aa21.97■■□□□ 1.11
USH1C-205ENST00000527020 LTN1O94822 1766 aa21.97■■□□□ 1.11
USH1C-205ENST00000527020 CEP85Q6P2H3 762 aa21.96■■□□□ 1.11
USH1C-205ENST00000527020 FAM208AQ9UK61 1670 aaKnown RBP21.96■■□□□ 1.11
USH1C-205ENST00000527020 TBC1D9Q6ZT07 1266 aa21.95■■□□□ 1.1
USH1C-205ENST00000527020 G2E3Q7L622 706 aa21.95■■□□□ 1.1
USH1C-205ENST00000527020 PLEKHM2Q8IWE5 1019 aa21.95■■□□□ 1.1
USH1C-205ENST00000527020 MEIS3Q99687 375 aa21.95■■□□□ 1.1
USH1C-205ENST00000527020 ZNF142P52746 1687 aaPredicted RBP21.94■■□□□ 1.1
USH1C-205ENST00000527020 HTATSF1O43719 755 aaKnown RBP21.94■■□□□ 1.1
USH1C-205ENST00000527020 GSPT1P15170 499 aaKnown RBP21.94■■□□□ 1.1
USH1C-205ENST00000527020 RPAP2Q8IXW5 612 aaPredicted RBP21.94■■□□□ 1.1
USH1C-205ENST00000527020 ABTB2Q8N961 1025 aa21.94■■□□□ 1.1
USH1C-205ENST00000527020 SPRYD3Q8NCJ5 442 aa21.94■■□□□ 1.1
USH1C-205ENST00000527020 KIF2CQ99661 725 aa21.92■■□□□ 1.1
USH1C-205ENST00000527020 CACNA1FO60840 1977 aa21.92■■□□□ 1.1
USH1C-205ENST00000527020 NCOA3Q9Y6Q9 1424 aa21.91■■□□□ 1.1
USH1C-205ENST00000527020 C16orf71Q8IYS4 520 aaPredicted RBP21.91■■□□□ 1.1
USH1C-205ENST00000527020 GNAT3A8MTJ3 354 aa21.9■■□□□ 1.1
USH1C-205ENST00000527020 SNX21Q969T3 373 aa21.9■■□□□ 1.1
USH1C-205ENST00000527020 NFAT5O94916 1531 aa21.9■■□□□ 1.1
USH1C-205ENST00000527020 PHF8Q9UPP1 1060 aa21.89■■□□□ 1.1
USH1C-205ENST00000527020 F6X3S4 739 aa21.89■■□□□ 1.09
USH1C-205ENST00000527020 TRHP20396 242 aaPredicted RBP21.89■■□□□ 1.09
USH1C-205ENST00000527020 HSCBQ8IWL3 235 aa21.89■■□□□ 1.09
USH1C-205ENST00000527020 IL17REQ8NFR9 667 aa21.89■■□□□ 1.09
USH1C-205ENST00000527020 MAP3K5Q99683 1374 aa21.88■■□□□ 1.09
USH1C-205ENST00000527020 N4BP2Q86UW6 1770 aaPredicted RBP21.88■■□□□ 1.09
USH1C-205ENST00000527020 TTC22Q5TAA0 569 aa21.88■■□□□ 1.09
USH1C-205ENST00000527020 CDC45O75419 566 aa21.88■■□□□ 1.09
USH1C-205ENST00000527020 OTUD7AQ8TE49 926 aaPredicted RBP21.88■■□□□ 1.09
USH1C-205ENST00000527020 LTV1Q96GA3 475 aaPredicted RBP21.88■■□□□ 1.09
USH1C-205ENST00000527020 SETD1BQ9UPS6 1966 aaKnown RBP21.87■■□□□ 1.09
USH1C-205ENST00000527020 RBM33Q96EV2 1170 aaKnown RBP21.87■■□□□ 1.09
USH1C-205ENST00000527020 ANKLE2Q86XL3 938 aa21.87■■□□□ 1.09
USH1C-205ENST00000527020 DDIT3P35638 169 aa21.86■■□□□ 1.09
USH1C-205ENST00000527020 CCT4P50991 539 aaKnown RBP21.86■■□□□ 1.09
USH1C-205ENST00000527020 CHMP5Q9NZZ3 219 aa21.86■■□□□ 1.09
USH1C-205ENST00000527020 RGPD2P0DJD1 1756 aa21.85■■□□□ 1.09
USH1C-205ENST00000527020 SLC4A10Q6U841 1118 aa21.85■■□□□ 1.09
USH1C-205ENST00000527020 SMARCA5O60264 1052 aaPredicted RBP21.85■■□□□ 1.09
USH1C-205ENST00000527020 USHBP1Q8N6Y0 703 aa21.85■■□□□ 1.09
USH1C-205ENST00000527020 C14orf37Q86TY3 774 aa21.84■■□□□ 1.09
USH1C-205ENST00000527020 ADGRL3Q9HAR2 1447 aa21.84■■□□□ 1.09
USH1C-205ENST00000527020 PHRF1Q9P1Y6 1649 aaKnown RBP21.83■■□□□ 1.09
USH1C-205ENST00000527020 STK31Q9BXU1 1019 aa21.83■■□□□ 1.09
USH1C-205ENST00000527020 CD2BP2O95400 341 aaKnown RBP21.82■■□□□ 1.08
USH1C-205ENST00000527020 FLIIQ13045 1269 aa21.82■■□□□ 1.08
USH1C-205ENST00000527020 IP6K1Q92551 441 aa21.82■■□□□ 1.08
USH1C-205ENST00000527020 CCDC30Q5VVM6 783 aa21.82■■□□□ 1.08
USH1C-205ENST00000527020 BABAM1Q9NWV8 329 aa21.82■■□□□ 1.08
USH1C-205ENST00000527020 ADAMTSL3P82987 1691 aa21.82■■□□□ 1.08
USH1C-205ENST00000527020 MED1Q15648 1581 aaPredicted RBP21.82■■□□□ 1.08
USH1C-205ENST00000527020 TAF7Q15545 349 aaPredicted RBP21.81■■□□□ 1.08
USH1C-205ENST00000527020 APBB1O00213 710 aa21.81■■□□□ 1.08
USH1C-205ENST00000527020 SOS1Q07889 1333 aaPredicted RBP21.8■■□□□ 1.08
USH1C-205ENST00000527020 MCM4P33991 863 aa21.8■■□□□ 1.08
USH1C-205ENST00000527020 RBM42Q9BTD8 480 aaKnown RBP21.8■■□□□ 1.08
USH1C-205ENST00000527020 TUBGCP6Q96RT7 1819 aa21.8■■□□□ 1.08
USH1C-205ENST00000527020 IL27Q8NEV9 243 aa21.8■■□□□ 1.08
USH1C-205ENST00000527020 NECTIN2Q92692 538 aa21.8■■□□□ 1.08
USH1C-205ENST00000527020 CEMIPQ8WUJ3 1361 aa21.79■■□□□ 1.08
USH1C-205ENST00000527020 NBPF6Q5VWK0 638 aa21.79■■□□□ 1.08
USH1C-205ENST00000527020 NBPF4Q96M43 638 aa21.79■■□□□ 1.08
USH1C-205ENST00000527020 KDM3BQ7LBC6 1761 aa21.79■■□□□ 1.08
USH1C-205ENST00000527020 HMMRO75330 724 aa21.78■■□□□ 1.08
USH1C-205ENST00000527020 SDSP20132 328 aa21.78■■□□□ 1.08
USH1C-205ENST00000527020 FKBP5Q13451 457 aaPredicted RBP21.78■■□□□ 1.08
USH1C-205ENST00000527020 GNAI2P04899 355 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 193 ms