RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 USHBP1Q8N6Y0 703 aa28.2■■■□□ 2.1
VPS28-206ENST00000526734 MAP2P11137 1827 aaKnown RBP28.2■■■□□ 2.1
VPS28-206ENST00000526734 R3HDM1Q15032 1099 aaKnown RBP28.19■■■□□ 2.1
VPS28-206ENST00000526734 PTF1AQ7RTS3 328 aa28.19■■■□□ 2.1
VPS28-206ENST00000526734 TNNT2P45379 298 aaPredicted RBP28.18■■■□□ 2.1
VPS28-206ENST00000526734 PLEKHG2Q9H7P9 1386 aa28.17■■■□□ 2.1
VPS28-206ENST00000526734 KCNQ2O43526 872 aa28.17■■■□□ 2.1
VPS28-206ENST00000526734 ACSBG1Q96GR2 724 aa28.17■■■□□ 2.1
VPS28-206ENST00000526734 LRP5O75197 1615 aa28.16■■■□□ 2.1
VPS28-206ENST00000526734 PCDH11XQ9BZA7 1347 aa28.16■■■□□ 2.1
VPS28-206ENST00000526734 PCDH11YQ9BZA8 1340 aa28.16■■■□□ 2.1
VPS28-206ENST00000526734 AMER1Q5JTC6 1135 aaPredicted RBP28.15■■■□□ 2.1
VPS28-206ENST00000526734 SHANK3Q9BYB0 1731 aa28.14■■■□□ 2.1
VPS28-206ENST00000526734 TXNRD1Q16881 649 aa28.13■■■□□ 2.09
VPS28-206ENST00000526734 EYA1Q99502 592 aa28.12■■■□□ 2.09
VPS28-206ENST00000526734 EIF4A2Q14240 407 aaKnown RBP28.11■■■□□ 2.09
VPS28-206ENST00000526734 PER1O15534 1290 aaPredicted RBP28.1■■■□□ 2.09
VPS28-206ENST00000526734 PROM2Q8N271 834 aa28.1■■■□□ 2.09
VPS28-206ENST00000526734 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.1■■■□□ 2.09
VPS28-206ENST00000526734 NPC1L1Q9UHC9 1359 aa28.1■■■□□ 2.09
VPS28-206ENST00000526734 BTAF1O14981 1849 aa28.09■■■□□ 2.09
VPS28-206ENST00000526734 SPG7Q9UQ90 795 aa28.08■■■□□ 2.09
VPS28-206ENST00000526734 PKD1L3Q7Z443 1732 aa28.08■■■□□ 2.09
VPS28-206ENST00000526734 DOT1LQ8TEK3 1739 aa28.07■■■□□ 2.08
VPS28-206ENST00000526734 IGSF1Q8N6C5 1336 aa28.07■■■□□ 2.08
VPS28-206ENST00000526734 PRIM1P49642 420 aaKnown RBP28.05■■■□□ 2.08
VPS28-206ENST00000526734 SYTL4Q96C24 671 aaPredicted RBP28.05■■■□□ 2.08
VPS28-206ENST00000526734 ANO8Q9HCE9 1232 aaPredicted RBP28.04■■■□□ 2.08
VPS28-206ENST00000526734 STK32BQ9NY57 414 aa28.04■■■□□ 2.08
VPS28-206ENST00000526734 SLC27A3Q5K4L6 730 aa28.03■■■□□ 2.08
VPS28-206ENST00000526734 CYP27B1O15528 508 aa28.02■■■□□ 2.08
VPS28-206ENST00000526734 NKX1-1Q15270 411 aaPredicted RBP28■■■□□ 2.07
VPS28-206ENST00000526734 SLC15A2Q16348 729 aa27.99■■■□□ 2.07
VPS28-206ENST00000526734 KAT6BQ8WYB5 2073 aa27.98■■■□□ 2.07
VPS28-206ENST00000526734 HMGB2P26583 209 aaKnown RBP27.98■■■□□ 2.07
VPS28-206ENST00000526734 PAPPAQ13219 1627 aa27.98■■■□□ 2.07
VPS28-206ENST00000526734 CC2D1BQ5T0F9 858 aaKnown RBP27.97■■■□□ 2.07
VPS28-206ENST00000526734 IFNL2Q8IZJ0 200 aa27.96■■■□□ 2.07
VPS28-206ENST00000526734 SRCAPQ6ZRS2 3230 aa27.95■■■□□ 2.07
VPS28-206ENST00000526734 MTHFSP49914 203 aa27.95■■■□□ 2.06
VPS28-206ENST00000526734 IL13P35225 146 aa27.94■■■□□ 2.06
VPS28-206ENST00000526734 AMOTQ4VCS5 1084 aa27.94■■■□□ 2.06
VPS28-206ENST00000526734 SPON1Q9HCB6 807 aa27.94■■■□□ 2.06
VPS28-206ENST00000526734 PHKG2P15735 406 aa27.93■■■□□ 2.06
VPS28-206ENST00000526734 PLEKHO1Q53GL0 409 aaPredicted RBP27.93■■■□□ 2.06
VPS28-206ENST00000526734 KDRP35968 1356 aa27.93■■■□□ 2.06
VPS28-206ENST00000526734 CASZ1Q86V15 1759 aa27.92■■■□□ 2.06
VPS28-206ENST00000526734 LRRC4BQ9NT99 713 aa27.92■■■□□ 2.06
VPS28-206ENST00000526734 LY75O60449 1722 aa27.92■■■□□ 2.06
VPS28-206ENST00000526734 SMARCC1Q92922 1105 aaPredicted RBP27.91■■■□□ 2.06
VPS28-206ENST00000526734 HSP90AB1P08238 724 aaKnown RBP27.9■■■□□ 2.06
VPS28-206ENST00000526734 TOGARAM1Q9Y4F4 1720 aa27.89■■■□□ 2.06
VPS28-206ENST00000526734 MPRIPQ6WCQ1 1025 aa27.89■■■□□ 2.06
VPS28-206ENST00000526734 CCNL1Q9UK58 526 aaPredicted RBP27.89■■■□□ 2.06
VPS28-206ENST00000526734 SULT6B1Q6IMI4 303 aa27.88■■■□□ 2.05
VPS28-206ENST00000526734 PALLDQ8WX93 1383 aa27.87■■■□□ 2.05
VPS28-206ENST00000526734 AKT1S1Q96B36 256 aa27.87■■■□□ 2.05
VPS28-206ENST00000526734 DIAPH1O60610 1272 aaKnown RBP27.86■■■□□ 2.05
VPS28-206ENST00000526734 AEBP1Q8IUX7 1158 aa27.85■■■□□ 2.05
VPS28-206ENST00000526734 DCAF5Q96JK2 942 aa27.85■■■□□ 2.05
VPS28-206ENST00000526734 TMOD3Q9NYL9 352 aa27.85■■■□□ 2.05
VPS28-206ENST00000526734 ZNF827Q17R98 1081 aa27.84■■■□□ 2.05
VPS28-206ENST00000526734 ZNF530Q6P9A1 599 aaPredicted RBP27.84■■■□□ 2.05
VPS28-206ENST00000526734 PIGBQ92521 554 aa27.83■■■□□ 2.05
VPS28-206ENST00000526734 ITGB4P16144 1822 aa27.83■■■□□ 2.05
VPS28-206ENST00000526734 ERVV-2B6SEH9 535 aa27.82■■■□□ 2.04
VPS28-206ENST00000526734 C1orf141Q5JVX7 400 aa27.82■■■□□ 2.04
VPS28-206ENST00000526734 MTFR1LQ9H019 292 aa27.82■■■□□ 2.04
VPS28-206ENST00000526734 QSER1Q2KHR3 1735 aa27.81■■■□□ 2.04
VPS28-206ENST00000526734 PPP1R1BQ9UD71 204 aaPredicted RBP27.81■■■□□ 2.04
VPS28-206ENST00000526734 SLC16A10Q8TF71 515 aa27.8■■■□□ 2.04
VPS28-206ENST00000526734 COL3A1P02461 1466 aaPredicted RBP27.8■■■□□ 2.04
VPS28-206ENST00000526734 ZBTB7AO95365 584 aa27.79■■■□□ 2.04
VPS28-206ENST00000526734 CFAP53Q96M91 514 aa27.79■■■□□ 2.04
VPS28-206ENST00000526734 PDGFDQ9GZP0 370 aaPredicted RBP27.79■■■□□ 2.04
VPS28-206ENST00000526734 TFCP2L1Q9NZI6 479 aa27.79■■■□□ 2.04
VPS28-206ENST00000526734 KCNQ4P56696 695 aa27.77■■■□□ 2.04
VPS28-206ENST00000526734 CNGB1Q14028 1251 aaPredicted RBP27.77■■■□□ 2.04
VPS28-206ENST00000526734 KDM6AO15550 1401 aaPredicted RBP27.75■■■□□ 2.03
VPS28-206ENST00000526734 PNPLA7Q6ZV29 1317 aa27.75■■■□□ 2.03
VPS28-206ENST00000526734 C5P01031 1676 aa27.75■■■□□ 2.03
VPS28-206ENST00000526734 AKAP4Q5JQC9 854 aa27.74■■■□□ 2.03
VPS28-206ENST00000526734 LOC102724428A0A0B4J2F2 783 aa27.73■■■□□ 2.03
VPS28-206ENST00000526734 HMOX1P09601 288 aa27.73■■■□□ 2.03
VPS28-206ENST00000526734 PTGER2P43116 358 aa27.73■■■□□ 2.03
VPS28-206ENST00000526734 SIK1P57059 783 aa27.73■■■□□ 2.03
VPS28-206ENST00000526734 CABP4P57796 275 aa27.72■■■□□ 2.03
VPS28-206ENST00000526734 FLAD1Q8NFF5 587 aa27.72■■■□□ 2.03
VPS28-206ENST00000526734 ATF5Q9Y2D1 282 aaPredicted RBP27.72■■■□□ 2.03
VPS28-206ENST00000526734 ASAP1Q9ULH1 1129 aa27.71■■■□□ 2.03
VPS28-206ENST00000526734 U2SURPO15042 1029 aaKnown RBP27.7■■■□□ 2.02
VPS28-206ENST00000526734 PPP2R1AP30153 589 aa27.7■■■□□ 2.02
VPS28-206ENST00000526734 ATG3Q9NT62 314 aa27.7■■■□□ 2.02
VPS28-206ENST00000526734 NUDCQ9Y266 331 aa27.7■■■□□ 2.02
VPS28-206ENST00000526734 SGIP1Q9BQI5 828 aa27.69■■■□□ 2.02
VPS28-206ENST00000526734 TAF1LQ8IZX4 1826 aa27.69■■■□□ 2.02
VPS28-206ENST00000526734 AK7Q96M32 723 aa27.68■■■□□ 2.02
VPS28-206ENST00000526734 C4BP0C0L5 1744 aa27.67■■■□□ 2.02
VPS28-206ENST00000526734 TUBGCP6Q96RT7 1819 aa27.67■■■□□ 2.02
VPS28-206ENST00000526734 ZNF831Q5JPB2 1677 aa27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms