RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 CCDC82Q8N4S0 544 aa11□□□□□ -0.65
SKP1-213ENST00000524288 INSM2Q96T92 566 aaPredicted RBP11□□□□□ -0.65
SKP1-213ENST00000524288 COG6Q9Y2V7 657 aa11□□□□□ -0.65
SKP1-213ENST00000524288 CTSOP43234 321 aaPredicted RBP10.99□□□□□ -0.65
SKP1-213ENST00000524288 PTSQ03393 145 aa10.99□□□□□ -0.65
SKP1-213ENST00000524288 POLMQ9NP87 494 aaPredicted RBP10.99□□□□□ -0.65
SKP1-213ENST00000524288 CYLDQ9NQC7 956 aa10.99□□□□□ -0.65
SKP1-213ENST00000524288 FIGNL2A6NMB9 653 aa10.98□□□□□ -0.65
SKP1-213ENST00000524288 ERVK-9P63128 1117 aa10.98□□□□□ -0.65
SKP1-213ENST00000524288 RNF217Q8TC41 542 aa10.98□□□□□ -0.65
SKP1-213ENST00000524288 ZNF395Q9H8N7 513 aaPredicted RBP10.98□□□□□ -0.65
SKP1-213ENST00000524288 KDF1Q8NAX2 398 aaPredicted RBP10.97□□□□□ -0.65
SKP1-213ENST00000524288 ATP5J2-PTCD1G3V325 749 aa10.96□□□□□ -0.65
SKP1-213ENST00000524288 CC2D2BQ6DHV5 1058 aa10.96□□□□□ -0.65
SKP1-213ENST00000524288 TBC1D2BQ9UPU7 963 aa10.96□□□□□ -0.65
SKP1-213ENST00000524288 FNBP4Q8N3X1 1017 aaPredicted RBP10.95□□□□□ -0.66
SKP1-213ENST00000524288 GDPD2Q9HCC8 539 aa10.95□□□□□ -0.66
SKP1-213ENST00000524288 FAM181BA6NEQ2 426 aa10.94□□□□□ -0.66
SKP1-213ENST00000524288 CYP2U1Q7Z449 544 aa10.94□□□□□ -0.66
SKP1-213ENST00000524288 SLC35F4A4IF30 521 aa10.93□□□□□ -0.66
SKP1-213ENST00000524288 GPC1P35052 558 aa10.93□□□□□ -0.66
SKP1-213ENST00000524288 RNF144AP50876 292 aaPredicted RBP10.93□□□□□ -0.66
SKP1-213ENST00000524288 EIF4G2P78344 907 aaKnown RBP eCLIP10.93□□□□□ -0.66
SKP1-213ENST00000524288 FOXD4L5Q5VV16 416 aaPredicted RBP10.93□□□□□ -0.66
SKP1-213ENST00000524288 CCDC155Q8N6L0 562 aa10.93□□□□□ -0.66
SKP1-213ENST00000524288 NANOS1Q8WY41 292 aaKnown RBP10.93□□□□□ -0.66
SKP1-213ENST00000524288 ZSCAN1Q8NBB4 408 aa10.92□□□□□ -0.66
SKP1-213ENST00000524288 PCDHB11Q9Y5F2 797 aa10.92□□□□□ -0.66
SKP1-213ENST00000524288 ABL2P42684 1182 aa10.91□□□□□ -0.66
SKP1-213ENST00000524288 LYSMD3Q7Z3D4 306 aa10.91□□□□□ -0.66
SKP1-213ENST00000524288 CEP126Q9P2H0 1117 aa10.91□□□□□ -0.66
SKP1-213ENST00000524288 ESF1Q9H501 851 aaKnown RBP10.9□□□□□ -0.66
SKP1-213ENST00000524288 ITGA6P23229 1130 aa10.89□□□□□ -0.67
SKP1-213ENST00000524288 IRF5Q13568 498 aa10.89□□□□□ -0.67
SKP1-213ENST00000524288 LORP23490 312 aaPredicted RBP10.88□□□□□ -0.67
SKP1-213ENST00000524288 WASHC4Q2M389 1173 aa10.88□□□□□ -0.67
SKP1-213ENST00000524288 SENP3-EIF4A1A0A087X0R7 540 aa10.87□□□□□ -0.67
SKP1-213ENST00000524288 A0A1W2PRU2 124 aa10.87□□□□□ -0.67
SKP1-213ENST00000524288 SCTRP47872 440 aa10.87□□□□□ -0.67
SKP1-213ENST00000524288 MEN1O00255 615 aa10.86□□□□□ -0.67
SKP1-213ENST00000524288 MYCP01106 439 aaPredicted RBP10.86□□□□□ -0.67
SKP1-213ENST00000524288 CLN3Q13286 438 aa10.86□□□□□ -0.67
SKP1-213ENST00000524288 NLRP3Q96P20 1036 aa10.86□□□□□ -0.67
SKP1-213ENST00000524288 OSBPL3Q9H4L5 887 aa10.86□□□□□ -0.67
SKP1-213ENST00000524288 GNRH1P01148 92 aa10.85□□□□□ -0.67
SKP1-213ENST00000524288 CCDC97Q96F63 343 aaPredicted RBP10.85□□□□□ -0.67
SKP1-213ENST00000524288 SV2AQ7L0J3 742 aa10.84□□□□□ -0.67
SKP1-213ENST00000524288 CCDC85AQ96PX6 553 aaPredicted RBP10.84□□□□□ -0.67
SKP1-213ENST00000524288 POM121CA8CG34 1229 aa10.83□□□□□ -0.68
SKP1-213ENST00000524288 SOX11P35716 441 aa10.83□□□□□ -0.68
SKP1-213ENST00000524288 SLFNL1Q499Z3 407 aa10.83□□□□□ -0.68
SKP1-213ENST00000524288 WDR44Q5JSH3 913 aa10.82□□□□□ -0.68
SKP1-213ENST00000524288 PRICKLE2Q7Z3G6 844 aa10.82□□□□□ -0.68
SKP1-213ENST00000524288 PHTF2Q8N3S3 785 aa10.82□□□□□ -0.68
SKP1-213ENST00000524288 GPR161Q8N6U8 529 aaKnown RBP10.82□□□□□ -0.68
SKP1-213ENST00000524288 GMCL1Q96IK5 515 aa10.82□□□□□ -0.68
SKP1-213ENST00000524288 VAC14Q08AM6 782 aa10.81□□□□□ -0.68
SKP1-213ENST00000524288 SLC27A3Q5K4L6 730 aa10.81□□□□□ -0.68
SKP1-213ENST00000524288 GRIP2Q9C0E4 1043 aa10.81□□□□□ -0.68
SKP1-213ENST00000524288 ARHGEF10LQ9HCE6 1279 aa10.81□□□□□ -0.68
SKP1-213ENST00000524288 CHIC2Q9UKJ5 165 aa10.81□□□□□ -0.68
SKP1-213ENST00000524288 DOLKQ9UPQ8 538 aa10.81□□□□□ -0.68
SKP1-213ENST00000524288 CDC14CA4D256 554 aa10.8□□□□□ -0.68
SKP1-213ENST00000524288 SPATA31C2B4DYI2 1134 aa10.8□□□□□ -0.68
SKP1-213ENST00000524288 USP4Q13107 963 aa10.8□□□□□ -0.68
SKP1-213ENST00000524288 RNF135Q8IUD6 432 aa10.8□□□□□ -0.68
SKP1-213ENST00000524288 VWA5B2Q8N398 1253 aa10.8□□□□□ -0.68
SKP1-213ENST00000524288 SIRT1Q96EB6 747 aa10.8□□□□□ -0.68
SKP1-213ENST00000524288 COL25A1Q9BXS0 654 aaPredicted RBP10.8□□□□□ -0.68
SKP1-213ENST00000524288 DYRK1BQ9Y463 629 aa10.8□□□□□ -0.68
SKP1-213ENST00000524288 KRT76Q01546 638 aa10.79□□□□□ -0.68
SKP1-213ENST00000524288 WWC1Q8IX03 1113 aa10.79□□□□□ -0.68
SKP1-213ENST00000524288 ESYT1Q9BSJ8 1104 aa10.79□□□□□ -0.68
SKP1-213ENST00000524288 CDCA7Q9BWT1 371 aaPredicted RBP10.79□□□□□ -0.68
SKP1-213ENST00000524288 SERPINA10Q9UK55 444 aa10.79□□□□□ -0.68
SKP1-213ENST00000524288 RHOQP17081 205 aa10.77□□□□□ -0.69
SKP1-213ENST00000524288 SEMA3FQ13275 785 aa10.77□□□□□ -0.69
SKP1-213ENST00000524288 MAP7D1Q3KQU3 841 aa10.77□□□□□ -0.69
SKP1-213ENST00000524288 ESCO1Q5FWF5 840 aa10.77□□□□□ -0.69
SKP1-213ENST00000524288 CNKSR1Q969H4 720 aa10.77□□□□□ -0.69
SKP1-213ENST00000524288 CALR3Q96L12 384 aaKnown RBP10.77□□□□□ -0.69
SKP1-213ENST00000524288 CNTNAP3BQ96NU0 1288 aa10.77□□□□□ -0.69
SKP1-213ENST00000524288 CNTNAP3Q9BZ76 1288 aa10.77□□□□□ -0.69
SKP1-213ENST00000524288 NBPF10Q6P3W6 841 aaKnown RBP10.76□□□□□ -0.69
SKP1-213ENST00000524288 TRIM22Q8IYM9 498 aa10.76□□□□□ -0.69
SKP1-213ENST00000524288 NBPF15Q8N660 670 aa10.76□□□□□ -0.69
SKP1-213ENST00000524288 GLMNQ92990 594 aa10.76□□□□□ -0.69
SKP1-213ENST00000524288 IL2RAP01589 272 aa10.75□□□□□ -0.69
SKP1-213ENST00000524288 TAS1R3Q7RTX0 852 aa10.75□□□□□ -0.69
SKP1-213ENST00000524288 XAGE2Q96GT9 111 aa10.75□□□□□ -0.69
SKP1-213ENST00000524288 H7C1W4 665 aa10.74□□□□□ -0.69
SKP1-213ENST00000524288 WASLO00401 505 aaPredicted RBP10.74□□□□□ -0.69
SKP1-213ENST00000524288 POU4F2Q12837 409 aa10.74□□□□□ -0.69
SKP1-213ENST00000524288 TRIM26Q12899 539 aaPredicted RBP10.74□□□□□ -0.69
SKP1-213ENST00000524288 RAB6BQ9NRW1 208 aa10.74□□□□□ -0.69
SKP1-213ENST00000524288 HRH3Q9Y5N1 445 aa10.74□□□□□ -0.69
SKP1-213ENST00000524288 SLURP2P0DP57 97 aa10.73□□□□□ -0.69
SKP1-213ENST00000524288 CENPCQ03188 943 aa10.73□□□□□ -0.69
SKP1-213ENST00000524288 RNFT1Q5M7Z0 435 aa10.73□□□□□ -0.69
SKP1-213ENST00000524288 FOXR1Q6PIV2 292 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 152.4 ms