RNA–Protein interactions for RNA: ENST00000522911.5

SDC2-207, Transcript of syndecan 2, humanhuman

TSL 3 BASIC

Gene SDC2, Length 677 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-207ENST00000522911 ARXQ96QS3 562 aa13.2□□□□□ -0.3
SDC2-207ENST00000522911 AMPHP49418 695 aa13.19□□□□□ -0.3
SDC2-207ENST00000522911 TMF1P82094 1093 aa13.19□□□□□ -0.3
SDC2-207ENST00000522911 CDCA8Q53HL2 280 aa13.19□□□□□ -0.3
SDC2-207ENST00000522911 ZCRB1Q8TBF4 217 aaKnown RBP13.19□□□□□ -0.3
SDC2-207ENST00000522911 INSRP06213 1382 aa13.19□□□□□ -0.3
SDC2-207ENST00000522911 MEGF6O75095 1541 aa13.18□□□□□ -0.3
SDC2-207ENST00000522911 DDX54Q8TDD1 881 aaKnown RBP13.18□□□□□ -0.3
SDC2-207ENST00000522911 LY75O60449 1722 aa13.18□□□□□ -0.3
SDC2-207ENST00000522911 SHANK3Q9BYB0 1731 aa13.18□□□□□ -0.3
SDC2-207ENST00000522911 USP47Q96K76 1375 aa13.18□□□□□ -0.3
SDC2-207ENST00000522911 SMG6Q86US8 1419 aaKnown RBP13.17□□□□□ -0.3
SDC2-207ENST00000522911 TIMELESSQ9UNS1 1208 aa13.17□□□□□ -0.3
SDC2-207ENST00000522911 PNPLA7Q6ZV29 1317 aa13.16□□□□□ -0.3
SDC2-207ENST00000522911 NCAPD2Q15021 1401 aa13.16□□□□□ -0.3
SDC2-207ENST00000522911 PRIM1P49642 420 aaKnown RBP13.16□□□□□ -0.3
SDC2-207ENST00000522911 NBPF6Q5VWK0 638 aa13.16□□□□□ -0.3
SDC2-207ENST00000522911 NBPF4Q96M43 638 aa13.16□□□□□ -0.3
SDC2-207ENST00000522911 FLT4P35916 1363 aa13.16□□□□□ -0.3
SDC2-207ENST00000522911 LTV1Q96GA3 475 aaPredicted RBP13.15□□□□□ -0.3
SDC2-207ENST00000522911 DOT1LQ8TEK3 1739 aa13.15□□□□□ -0.3
SDC2-207ENST00000522911 FBLN1P23142 703 aa13.14□□□□□ -0.31
SDC2-207ENST00000522911 ZNF784Q8NCA9 323 aaPredicted RBP13.14□□□□□ -0.31
SDC2-207ENST00000522911 RAPGEF4Q8WZA2 1011 aa13.14□□□□□ -0.31
SDC2-207ENST00000522911 PLEKHG2Q9H7P9 1386 aa13.14□□□□□ -0.31
SDC2-207ENST00000522911 PCDH11XQ9BZA7 1347 aa13.13□□□□□ -0.31
SDC2-207ENST00000522911 PCDH11YQ9BZA8 1340 aa13.13□□□□□ -0.31
SDC2-207ENST00000522911 POLD1P28340 1107 aa13.13□□□□□ -0.31
SDC2-207ENST00000522911 RRS1Q15050 365 aaKnown RBP13.13□□□□□ -0.31
SDC2-207ENST00000522911 GGNBP2Q9H3C7 697 aa13.13□□□□□ -0.31
SDC2-207ENST00000522911 TFCP2L1Q9NZI6 479 aa13.13□□□□□ -0.31
SDC2-207ENST00000522911 CLSPNQ9HAW4 1339 aa13.13□□□□□ -0.31
SDC2-207ENST00000522911 TATP17735 454 aaPredicted RBP13.12□□□□□ -0.31
SDC2-207ENST00000522911 TRIM26Q12899 539 aaPredicted RBP13.12□□□□□ -0.31
SDC2-207ENST00000522911 RGPD2P0DJD1 1756 aa13.12□□□□□ -0.31
SDC2-207ENST00000522911 CHD4Q14839 1912 aa13.11□□□□□ -0.31
SDC2-207ENST00000522911 HSP90AB2PQ58FF8 381 aa13.11□□□□□ -0.31
SDC2-207ENST00000522911 SYTL4Q96C24 671 aaPredicted RBP13.11□□□□□ -0.31
SDC2-207ENST00000522911 CCNL1Q9UK58 526 aaPredicted RBP13.11□□□□□ -0.31
SDC2-207ENST00000522911 TUBGCP6Q96RT7 1819 aa13.11□□□□□ -0.31
SDC2-207ENST00000522911 ANKRD26Q9UPS8 1709 aa13.1□□□□□ -0.31
SDC2-207ENST00000522911 KAT6BQ8WYB5 2073 aa13.1□□□□□ -0.31
SDC2-207ENST00000522911 NKX1-1Q15270 411 aaPredicted RBP13.1□□□□□ -0.31
SDC2-207ENST00000522911 FLAD1Q8NFF5 587 aa13.1□□□□□ -0.31
SDC2-207ENST00000522911 CARD14Q9BXL6 1004 aa13.1□□□□□ -0.31
SDC2-207ENST00000522911 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.1□□□□□ -0.312e-6■■□□□ 11.9
SDC2-207ENST00000522911 KIF20BQ96Q89 1820 aa13.1□□□□□ -0.31
SDC2-207ENST00000522911 CYP27B1O15528 508 aa13.09□□□□□ -0.31
SDC2-207ENST00000522911 PKD1L3Q7Z443 1732 aa13.09□□□□□ -0.31
SDC2-207ENST00000522911 WASHC2AQ641Q2 1341 aa13.09□□□□□ -0.31
SDC2-207ENST00000522911 SMARCC1Q92922 1105 aaPredicted RBP13.08□□□□□ -0.32
SDC2-207ENST00000522911 NSD3Q9BZ95 1437 aa13.07□□□□□ -0.32
SDC2-207ENST00000522911 COL23A1Q86Y22 540 aaPredicted RBP13.07□□□□□ -0.32
SDC2-207ENST00000522911 USHBP1Q8N6Y0 703 aa13.07□□□□□ -0.32
SDC2-207ENST00000522911 PALLDQ8WX93 1383 aa13.07□□□□□ -0.32
SDC2-207ENST00000522911 C5P01031 1676 aa13.06□□□□□ -0.32
SDC2-207ENST00000522911 KCNQ4P56696 695 aa13.06□□□□□ -0.32
SDC2-207ENST00000522911 GPR162Q16538 588 aa13.06□□□□□ -0.32
SDC2-207ENST00000522911 GRIN3BO60391 1043 aa13.05□□□□□ -0.32
SDC2-207ENST00000522911 CD2APQ9Y5K6 639 aa13.05□□□□□ -0.32
SDC2-207ENST00000522911 EMILIN1Q9Y6C2 1016 aa13.05□□□□□ -0.32
SDC2-207ENST00000522911 SPG7Q9UQ90 795 aa13.04□□□□□ -0.32
SDC2-207ENST00000522911 TOGARAM1Q9Y4F4 1720 aa13.04□□□□□ -0.32
SDC2-207ENST00000522911 TAF1LQ8IZX4 1826 aa13.04□□□□□ -0.32
SDC2-207ENST00000522911 NLGN2Q8NFZ4 835 aa13.03□□□□□ -0.32
SDC2-207ENST00000522911 C4BP0C0L5 1744 aa13.02□□□□□ -0.32
SDC2-207ENST00000522911 SSFA2P28290 1259 aa13.02□□□□□ -0.33
SDC2-207ENST00000522911 C1QTNF8P60827 252 aa13.02□□□□□ -0.33
SDC2-207ENST00000522911 MPRIPQ6WCQ1 1025 aa13.02□□□□□ -0.33
SDC2-207ENST00000522911 PIGBQ92521 554 aa13.02□□□□□ -0.33
SDC2-207ENST00000522911 POLKQ9UBT6 870 aa13.02□□□□□ -0.33
SDC2-207ENST00000522911 MAP2P11137 1827 aaKnown RBP13.02□□□□□ -0.33
SDC2-207ENST00000522911 CEP350Q5VT06 3117 aa13.02□□□□□ -0.33
SDC2-207ENST00000522911 EYA1Q99502 592 aa13.01□□□□□ -0.33
SDC2-207ENST00000522911 ITGB4P16144 1822 aa13.01□□□□□ -0.33
SDC2-207ENST00000522911 YBX3P16989 372 aaKnown RBP eCLIP13□□□□□ -0.33
SDC2-207ENST00000522911 IFNL2Q8IZJ0 200 aa13□□□□□ -0.33
SDC2-207ENST00000522911 UBR3Q6ZT12 1888 aa12.99□□□□□ -0.33
SDC2-207ENST00000522911 ZNF831Q5JPB2 1677 aa12.99□□□□□ -0.33
SDC2-207ENST00000522911 LOC102724428A0A0B4J2F2 783 aa12.99□□□□□ -0.33
SDC2-207ENST00000522911 PHKG2P15735 406 aa12.99□□□□□ -0.33
SDC2-207ENST00000522911 SIK1P57059 783 aa12.99□□□□□ -0.33
SDC2-207ENST00000522911 AK7Q96M32 723 aa12.99□□□□□ -0.33
SDC2-207ENST00000522911 IGSF1Q8N6C5 1336 aa12.98□□□□□ -0.33
SDC2-207ENST00000522911 TMOD3Q9NYL9 352 aa12.98□□□□□ -0.33
SDC2-207ENST00000522911 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.97□□□□□ -0.33
SDC2-207ENST00000522911 ERVV-2B6SEH9 535 aa12.97□□□□□ -0.33
SDC2-207ENST00000522911 EIF4A2Q14240 407 aaKnown RBP12.97□□□□□ -0.33
SDC2-207ENST00000522911 AMIGO3Q86WK7 504 aa12.97□□□□□ -0.33
SDC2-207ENST00000522911 KLHL34Q8N239 644 aa12.97□□□□□ -0.33
SDC2-207ENST00000522911 ADCY9O60503 1353 aa12.96□□□□□ -0.33
SDC2-207ENST00000522911 KDRP35968 1356 aa12.96□□□□□ -0.33
SDC2-207ENST00000522911 PPM1GO15355 546 aaPredicted RBP12.96□□□□□ -0.33
SDC2-207ENST00000522911 GIGYF1O75420 1035 aaPredicted RBP12.96□□□□□ -0.33
SDC2-207ENST00000522911 HSP90AB1P08238 724 aaKnown RBP12.96□□□□□ -0.33
SDC2-207ENST00000522911 MSL1Q68DK7 614 aa12.96□□□□□ -0.33
SDC2-207ENST00000522911 LINC00116Q8NCU8 138 aa12.96□□□□□ -0.33
SDC2-207ENST00000522911 RC3H1Q5TC82 1133 aaKnown RBP12.95□□□□□ -0.34
SDC2-207ENST00000522911 DCAF5Q96JK2 942 aa12.95□□□□□ -0.34
SDC2-207ENST00000522911 ASAP1Q9ULH1 1129 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms