RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, human

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-204	ENST00000517525	KCNQ2	O43526	872 aa		33.69	■■■□□ 2.98
PVT1-204	ENST00000517525	DDX54	Q8TDD1	881 aa	Known RBP	33.69	■■■□□ 2.98
PVT1-204	ENST00000517525	TAT	P17735	454 aa	Predicted RBP	33.68	■■■□□ 2.98
PVT1-204	ENST00000517525	TNNT2	P45379	298 aa	Predicted RBP	33.68	■■■□□ 2.98
PVT1-204	ENST00000517525	NHS	Q6T4R5	1651 aa		33.68	■■■□□ 2.98
PVT1-204	ENST00000517525	NBPF14	Q5TI25	921 aa		33.65	■■■□□ 2.98
PVT1-204	ENST00000517525	PROM2	Q8N271	834 aa		33.65	■■■□□ 2.98
PVT1-204	ENST00000517525	EYA1	Q99502	592 aa		33.65	■■■□□ 2.98
PVT1-204	ENST00000517525	NPC1L1	Q9UHC9	1359 aa		33.64	■■■□□ 2.98
PVT1-204	ENST00000517525	ACSBG1	Q96GR2	724 aa		33.64	■■■□□ 2.98
PVT1-204	ENST00000517525	PLEKHG2	Q9H7P9	1386 aa		33.63	■■■□□ 2.97
PVT1-204	ENST00000517525	NUP188	Q5SRE5	1749 aa		33.63	■■■□□ 2.97
PVT1-204	ENST00000517525	EIF4A2	Q14240	407 aa	Known RBP	33.63	■■■□□ 2.97
PVT1-204	ENST00000517525	PSD	A5PKW4	1024 aa	Predicted RBP	33.62	■■■□□ 2.97
PVT1-204	ENST00000517525	R3HDM1	Q15032	1099 aa	Known RBP	33.62	■■■□□ 2.97
PVT1-204	ENST00000517525	SHANK3	Q9BYB0	1731 aa		33.61	■■■□□ 2.97
PVT1-204	ENST00000517525	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	33.6	■■■□□ 2.97	6e-7	■■□□□ 13.7
PVT1-204	ENST00000517525	PCDH11X	Q9BZA7	1347 aa		33.59	■■■□□ 2.97
PVT1-204	ENST00000517525	PCDH11Y	Q9BZA8	1340 aa		33.59	■■■□□ 2.97
PVT1-204	ENST00000517525	TXNRD1	Q16881	649 aa		33.58	■■■□□ 2.97
PVT1-204	ENST00000517525	IGSF1	Q8N6C5	1336 aa		33.56	■■■□□ 2.96
PVT1-204	ENST00000517525	CYP27B1	O15528	508 aa		33.53	■■■□□ 2.96
PVT1-204	ENST00000517525	PRIM1	P49642	420 aa	Known RBP	33.53	■■■□□ 2.96
PVT1-204	ENST00000517525	SPG7	Q9UQ90	795 aa		33.52	■■■□□ 2.96
PVT1-204	ENST00000517525	PKD1L3	Q7Z443	1732 aa		33.51	■■■□□ 2.96
PVT1-204	ENST00000517525	NKX1-1	Q15270	411 aa	Predicted RBP	33.51	■■■□□ 2.95
PVT1-204	ENST00000517525	BTAF1	O14981	1849 aa		33.51	■■■□□ 2.95
PVT1-204	ENST00000517525	LRP5	O75197	1615 aa		33.5	■■■□□ 2.95
PVT1-204	ENST00000517525	ANO8	Q9HCE9	1232 aa	Predicted RBP	33.48	■■■□□ 2.95
PVT1-204	ENST00000517525	KAT6B	Q8WYB5	2073 aa		33.46	■■■□□ 2.95
PVT1-204	ENST00000517525	IL13	P35225	146 aa		33.46	■■■□□ 2.95
PVT1-204	ENST00000517525	SLC27A3	Q5K4L6	730 aa		33.46	■■■□□ 2.95
PVT1-204	ENST00000517525	CC2D1B	Q5T0F9	858 aa	Known RBP	33.46	■■■□□ 2.95
PVT1-204	ENST00000517525	MTHFS	P49914	203 aa		33.45	■■■□□ 2.95
PVT1-204	ENST00000517525	DOT1L	Q8TEK3	1739 aa		33.45	■■■□□ 2.94
PVT1-204	ENST00000517525	SYTL4	Q96C24	671 aa	Predicted RBP	33.44	■■■□□ 2.94
PVT1-204	ENST00000517525	KDR	P35968	1356 aa		33.42	■■■□□ 2.94
PVT1-204	ENST00000517525	SLC15A2	Q16348	729 aa		33.41	■■■□□ 2.94
PVT1-204	ENST00000517525	IFNL2	Q8IZJ0	200 aa		33.41	■■■□□ 2.94
PVT1-204	ENST00000517525	STK32B	Q9NY57	414 aa		33.41	■■■□□ 2.94
PVT1-204	ENST00000517525	LRRC4B	Q9NT99	713 aa		33.4	■■■□□ 2.94
PVT1-204	ENST00000517525	PHKG2	P15735	406 aa		33.39	■■■□□ 2.94
PVT1-204	ENST00000517525	AMOT	Q4VCS5	1084 aa		33.38	■■■□□ 2.93
PVT1-204	ENST00000517525	PAPPA	Q13219	1627 aa		33.38	■■■□□ 2.93
PVT1-204	ENST00000517525	PLEKHO1	Q53GL0	409 aa	Predicted RBP	33.36	■■■□□ 2.93
PVT1-204	ENST00000517525	SULT6B1	Q6IMI4	303 aa		33.34	■■■□□ 2.93
PVT1-204	ENST00000517525	AEBP1	Q8IUX7	1158 aa		33.34	■■■□□ 2.93
PVT1-204	ENST00000517525	LY75	O60449	1722 aa		33.32	■■■□□ 2.92
PVT1-204	ENST00000517525	HMGB2	P26583	209 aa	Known RBP	33.32	■■■□□ 2.92
PVT1-204	ENST00000517525	DIAPH1	O60610	1272 aa	Known RBP	33.31	■■■□□ 2.92
PVT1-204	ENST00000517525	HSP90AB1	P08238	724 aa	Known RBP	33.31	■■■□□ 2.92
PVT1-204	ENST00000517525	MPRIP	Q6WCQ1	1025 aa		33.31	■■■□□ 2.92
PVT1-204	ENST00000517525	AKT1S1	Q96B36	256 aa		33.31	■■■□□ 2.92
PVT1-204	ENST00000517525	SMARCC1	Q92922	1105 aa	Predicted RBP	33.3	■■■□□ 2.92
PVT1-204	ENST00000517525	TOGARAM1	Q9Y4F4	1720 aa		33.3	■■■□□ 2.92
PVT1-204	ENST00000517525	CASZ1	Q86V15	1759 aa		33.29	■■■□□ 2.92
PVT1-204	ENST00000517525	PIGB	Q92521	554 aa		33.29	■■■□□ 2.92
PVT1-204	ENST00000517525	SPON1	Q9HCB6	807 aa		33.29	■■■□□ 2.92
PVT1-204	ENST00000517525	COL3A1	P02461	1466 aa	Predicted RBP	33.27	■■■□□ 2.92
PVT1-204	ENST00000517525	DCAF5	Q96JK2	942 aa		33.27	■■■□□ 2.92
PVT1-204	ENST00000517525	CCNL1	Q9UK58	526 aa	Predicted RBP	33.27	■■■□□ 2.92
PVT1-204	ENST00000517525	ERVV-2	B6SEH9	535 aa		33.26	■■■□□ 2.91
PVT1-204	ENST00000517525	ZNF827	Q17R98	1081 aa		33.26	■■■□□ 2.91
PVT1-204	ENST00000517525	PALLD	Q8WX93	1383 aa		33.25	■■■□□ 2.91
PVT1-204	ENST00000517525	ZNF530	Q6P9A1	599 aa	Predicted RBP	33.25	■■■□□ 2.91
PVT1-204	ENST00000517525	ITGB4	P16144	1822 aa		33.24	■■■□□ 2.91
PVT1-204	ENST00000517525	PDGFD	Q9GZP0	370 aa	Predicted RBP	33.24	■■■□□ 2.91
PVT1-204	ENST00000517525	TMOD3	Q9NYL9	352 aa		33.24	■■■□□ 2.91
PVT1-204	ENST00000517525	KCNQ4	P56696	695 aa		33.2	■■■□□ 2.91
PVT1-204	ENST00000517525	PPP2R1A	P30153	589 aa		33.18	■■■□□ 2.9
PVT1-204	ENST00000517525	CNGB1	Q14028	1251 aa	Predicted RBP	33.18	■■■□□ 2.9
PVT1-204	ENST00000517525	C1orf141	Q5JVX7	400 aa		33.18	■■■□□ 2.9
PVT1-204	ENST00000517525	MTFR1L	Q9H019	292 aa		33.18	■■■□□ 2.9
PVT1-204	ENST00000517525	KDM6A	O15550	1401 aa	Predicted RBP	33.18	■■■□□ 2.9
PVT1-204	ENST00000517525	SLC16A10	Q8TF71	515 aa		33.17	■■■□□ 2.9
PVT1-204	ENST00000517525	CFAP53	Q96M91	514 aa		33.17	■■■□□ 2.9
PVT1-204	ENST00000517525	HMOX1	P09601	288 aa		33.16	■■■□□ 2.9
PVT1-204	ENST00000517525	QSER1	Q2KHR3	1735 aa		33.16	■■■□□ 2.9
PVT1-204	ENST00000517525	AKAP4	Q5JQC9	854 aa		33.15	■■■□□ 2.9
PVT1-204	ENST00000517525	PNPLA7	Q6ZV29	1317 aa		33.14	■■■□□ 2.9
PVT1-204	ENST00000517525	ZBTB7A	O95365	584 aa		33.14	■■■□□ 2.9
PVT1-204	ENST00000517525	PTGER2	P43116	358 aa		33.14	■■■□□ 2.9
PVT1-204	ENST00000517525	ATG3	Q9NT62	314 aa		33.14	■■■□□ 2.9
PVT1-204	ENST00000517525	TFCP2L1	Q9NZI6	479 aa		33.14	■■■□□ 2.9
PVT1-204	ENST00000517525	ASAP1	Q9ULH1	1129 aa		33.14	■■■□□ 2.9
PVT1-204	ENST00000517525	LOC102724428	A0A0B4J2F2	783 aa		33.12	■■■□□ 2.89
PVT1-204	ENST00000517525	SIK1	P57059	783 aa		33.12	■■■□□ 2.89
PVT1-204	ENST00000517525	SGIP1	Q9BQI5	828 aa		33.12	■■■□□ 2.89
PVT1-204	ENST00000517525	CABP4	P57796	275 aa		33.1	■■■□□ 2.89
PVT1-204	ENST00000517525	U2SURP	O15042	1029 aa	Known RBP	33.08	■■■□□ 2.89
PVT1-204	ENST00000517525	ZEB1	P37275	1124 aa	Predicted RBP	33.08	■■■□□ 2.89
PVT1-204	ENST00000517525	MTHFSD	Q2M296	383 aa	Known RBP	33.08	■■■□□ 2.89
PVT1-204	ENST00000517525	NUDC	Q9Y266	331 aa		33.08	■■■□□ 2.89
PVT1-204	ENST00000517525	ATF5	Q9Y2D1	282 aa	Predicted RBP	33.08	■■■□□ 2.89
PVT1-204	ENST00000517525	C5	P01031	1676 aa		33.07	■■■□□ 2.88
PVT1-204	ENST00000517525	FLAD1	Q8NFF5	587 aa		33.06	■■■□□ 2.88
PVT1-204	ENST00000517525	PPP1R1B	Q9UD71	204 aa	Predicted RBP	33.06	■■■□□ 2.88
PVT1-204	ENST00000517525	TAF1L	Q8IZX4	1826 aa		33.05	■■■□□ 2.88
PVT1-204	ENST00000517525	NFATC2IP	Q8NCF5	419 aa		33.03	■■■□□ 2.88
PVT1-204	ENST00000517525	ZNF831	Q5JPB2	1677 aa		33.02	■■■□□ 2.88

Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms