RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TOM1L2Q6ZVM7 507 aa20.67■□□□□ 0.9
NUP54-214ENST00000514307 FANCIQ9NVI1 1328 aa20.67■□□□□ 0.9
NUP54-214ENST00000514307 LTN1O94822 1766 aa20.67■□□□□ 0.9
NUP54-214ENST00000514307 EXOSC9Q06265 439 aaKnown RBP20.66■□□□□ 0.9
NUP54-214ENST00000514307 WDR17Q8IZU2 1322 aa20.66■□□□□ 0.9
NUP54-214ENST00000514307 PLEKHG2Q9H7P9 1386 aa20.66■□□□□ 0.9
NUP54-214ENST00000514307 COL16A1Q07092 1604 aaPredicted RBP20.65■□□□□ 0.9
NUP54-214ENST00000514307 CHL1O00533 1208 aa20.65■□□□□ 0.9
NUP54-214ENST00000514307 DCTN1Q14203 1278 aa20.65■□□□□ 0.9
NUP54-214ENST00000514307 ZNF530Q6P9A1 599 aaPredicted RBP20.65■□□□□ 0.9
NUP54-214ENST00000514307 MCM10Q7L590 875 aa20.65■□□□□ 0.9
NUP54-214ENST00000514307 TSR2Q969E8 191 aaKnown RBP20.65■□□□□ 0.9
NUP54-214ENST00000514307 THUMPD2Q9BTF0 503 aaKnown RBP20.65■□□□□ 0.9
NUP54-214ENST00000514307 CARD10Q9BWT7 1032 aa20.65■□□□□ 0.9
NUP54-214ENST00000514307 NCAPD2Q15021 1401 aa20.63■□□□□ 0.89
NUP54-214ENST00000514307 MAP3K5Q99683 1374 aa20.63■□□□□ 0.89
NUP54-214ENST00000514307 TAF7Q15545 349 aaPredicted RBP20.63■□□□□ 0.89
NUP54-214ENST00000514307 RARSP54136 660 aaKnown RBP20.62■□□□□ 0.89
NUP54-214ENST00000514307 MBIPQ9NS73 344 aa20.62■□□□□ 0.89
NUP54-214ENST00000514307 IL17REQ8NFR9 667 aa20.61■□□□□ 0.89
NUP54-214ENST00000514307 STRN4Q9NRL3 753 aa20.61■□□□□ 0.89
NUP54-214ENST00000514307 BTG4Q9NY30 223 aa20.61■□□□□ 0.89
NUP54-214ENST00000514307 MS4A1P11836 297 aa20.6■□□□□ 0.89
NUP54-214ENST00000514307 ALDH1L2Q3SY69 923 aa20.6■□□□□ 0.89
NUP54-214ENST00000514307 CHMP4AQ9BY43 222 aa20.6■□□□□ 0.89
NUP54-214ENST00000514307 HSP90AB1P08238 724 aaKnown RBP20.59■□□□□ 0.89
NUP54-214ENST00000514307 IRX6P78412 446 aaPredicted RBP20.59■□□□□ 0.89
NUP54-214ENST00000514307 IFNL2Q8IZJ0 200 aa20.59■□□□□ 0.89
NUP54-214ENST00000514307 CANXP27824 592 aaKnown RBP20.58■□□□□ 0.89
NUP54-214ENST00000514307 TEFQ10587 303 aa20.58■□□□□ 0.89
NUP54-214ENST00000514307 PPP4R2Q9NY27 417 aa20.58■□□□□ 0.89
NUP54-214ENST00000514307 TSPYL4Q9UJ04 414 aa20.58■□□□□ 0.89
NUP54-214ENST00000514307 NUTM2BA6NNL0 878 aaPredicted RBP20.57■□□□□ 0.88
NUP54-214ENST00000514307 NUTM2EB1AL46 878 aaPredicted RBP20.57■□□□□ 0.88
NUP54-214ENST00000514307 IPO8O15397 1037 aaKnown RBP20.57■□□□□ 0.88
NUP54-214ENST00000514307 BCAR3O75815 825 aa20.57■□□□□ 0.88
NUP54-214ENST00000514307 NUTM2AQ8IVF1 878 aaPredicted RBP20.57■□□□□ 0.88
NUP54-214ENST00000514307 COL18A1P39060 1754 aa20.57■□□□□ 0.88
NUP54-214ENST00000514307 CRB1P82279 1406 aa20.56■□□□□ 0.88
NUP54-214ENST00000514307 VAMP4O75379 141 aa20.56■□□□□ 0.88
NUP54-214ENST00000514307 ADAMTS2O95450 1211 aa20.56■□□□□ 0.88
NUP54-214ENST00000514307 IL2RBP14784 551 aa20.56■□□□□ 0.88
NUP54-214ENST00000514307 PDE3AQ14432 1141 aa20.56■□□□□ 0.88
NUP54-214ENST00000514307 LARP1Q6PKG0 1096 aaKnown RBP20.56■□□□□ 0.88
NUP54-214ENST00000514307 ZCRB1Q8TBF4 217 aaKnown RBP20.56■□□□□ 0.88
NUP54-214ENST00000514307 CAMTA1Q9Y6Y1 1673 aa20.56■□□□□ 0.88
NUP54-214ENST00000514307 JCADQ9P266 1359 aa20.56■□□□□ 0.88
NUP54-214ENST00000514307 RNMTO43148 476 aaKnown RBP20.55■□□□□ 0.88
NUP54-214ENST00000514307 TWISTNBQ3B726 338 aaPredicted RBP20.55■□□□□ 0.88
NUP54-214ENST00000514307 ILDR2Q71H61 639 aa20.55■□□□□ 0.88
NUP54-214ENST00000514307 SOS1Q07889 1333 aaPredicted RBP20.54■□□□□ 0.88
NUP54-214ENST00000514307 CRYBG1Q9Y4K1 1723 aa20.54■□□□□ 0.88
NUP54-214ENST00000514307 PLIN1O60240 522 aa20.54■□□□□ 0.88
NUP54-214ENST00000514307 MPRIPQ6WCQ1 1025 aa20.54■□□□□ 0.88
NUP54-214ENST00000514307 SMC4Q9NTJ3 1288 aa20.54■□□□□ 0.88
NUP54-214ENST00000514307 COL5A2P05997 1499 aaPredicted RBP20.54■□□□□ 0.88
NUP54-214ENST00000514307 LGR6Q9HBX8 967 aa20.53■□□□□ 0.88
NUP54-214ENST00000514307 PHKG2P15735 406 aa20.52■□□□□ 0.88
NUP54-214ENST00000514307 BRPF1P55201 1214 aaPredicted RBP20.52■□□□□ 0.88
NUP54-214ENST00000514307 C8orf58Q8NAV2 365 aa20.52■□□□□ 0.88
NUP54-214ENST00000514307 FRAT1Q92837 279 aaPredicted RBP20.52■□□□□ 0.88
NUP54-214ENST00000514307 DCAF5Q96JK2 942 aa20.52■□□□□ 0.88
NUP54-214ENST00000514307 CDCA7Q9BWT1 371 aaPredicted RBP20.52■□□□□ 0.88
NUP54-214ENST00000514307 COL22A1Q8NFW1 1626 aaPredicted RBP20.52■□□□□ 0.88
NUP54-214ENST00000514307 SPATA31A6Q5VVP1 1343 aa20.52■□□□□ 0.87
NUP54-214ENST00000514307 CEMIPQ8WUJ3 1361 aa20.51■□□□□ 0.87
NUP54-214ENST00000514307 SSH1Q8WYL5 1049 aa20.51■□□□□ 0.87
NUP54-214ENST00000514307 MIS18AQ9NYP9 233 aa20.51■□□□□ 0.87
NUP54-214ENST00000514307 ELL2O00472 640 aaPredicted RBP20.5■□□□□ 0.87
NUP54-214ENST00000514307 ZKSCAN2Q63HK3 967 aa20.5■□□□□ 0.87
NUP54-214ENST00000514307 THRAP3Q9Y2W1 955 aaKnown RBP20.5■□□□□ 0.87
NUP54-214ENST00000514307 BTBD11A6QL63 1104 aa20.49■□□□□ 0.87
NUP54-214ENST00000514307 FAM208AQ9UK61 1670 aaKnown RBP20.48■□□□□ 0.87
NUP54-214ENST00000514307 OVOS2A0A0G2JMS6 1433 aa20.48■□□□□ 0.87
NUP54-214ENST00000514307 AAMPQ13685 434 aa20.48■□□□□ 0.87
NUP54-214ENST00000514307 TSPYL6Q8N831 410 aa20.48■□□□□ 0.87
NUP54-214ENST00000514307 ARHGAP45Q92619 1136 aa20.48■□□□□ 0.87
NUP54-214ENST00000514307 NGLY1Q96IV0 654 aa20.48■□□□□ 0.87
NUP54-214ENST00000514307 KIF16BQ96L93 1317 aa20.48■□□□□ 0.87
NUP54-214ENST00000514307 PCDH11XQ9BZA7 1347 aa20.48■□□□□ 0.87
NUP54-214ENST00000514307 PCDH11YQ9BZA8 1340 aa20.48■□□□□ 0.87
NUP54-214ENST00000514307 LRP6O75581 1613 aa20.47■□□□□ 0.87
NUP54-214ENST00000514307 LMO7Q8WWI1 1683 aa20.47■□□□□ 0.87
NUP54-214ENST00000514307 EXOC5O00471 708 aa20.46■□□□□ 0.87
NUP54-214ENST00000514307 PELP1Q8IZL8 1130 aaKnown RBP20.46■□□□□ 0.87
NUP54-214ENST00000514307 USP35Q9P2H5 1018 aa20.46■□□□□ 0.87
NUP54-214ENST00000514307 COL14A1Q05707 1796 aaKnown RBP20.46■□□□□ 0.87
NUP54-214ENST00000514307 CYP27B1O15528 508 aa20.45■□□□□ 0.86
NUP54-214ENST00000514307 NKX1-1Q15270 411 aaPredicted RBP20.45■□□□□ 0.86
NUP54-214ENST00000514307 MRPL50Q8N5N7 158 aaKnown RBP20.45■□□□□ 0.86
NUP54-214ENST00000514307 EXOC6Q8TAG9 804 aa20.45■□□□□ 0.86
NUP54-214ENST00000514307 BCL2L13Q9BXK5 485 aa20.45■□□□□ 0.86
NUP54-214ENST00000514307 NOB1Q9ULX3 412 aaKnown RBP20.45■□□□□ 0.86
NUP54-214ENST00000514307 RGPD5Q99666 1765 aa20.44■□□□□ 0.86
NUP54-214ENST00000514307 ERVV-2B6SEH9 535 aa20.44■□□□□ 0.86
NUP54-214ENST00000514307 CABP4P57796 275 aa20.44■□□□□ 0.86
NUP54-214ENST00000514307 CCDC30Q5VVM6 783 aa20.44■□□□□ 0.86
NUP54-214ENST00000514307 DDX54Q8TDD1 881 aaKnown RBP20.44■□□□□ 0.86
NUP54-214ENST00000514307 CRBNQ96SW2 442 aa20.44■□□□□ 0.86
NUP54-214ENST00000514307 SLC52A2Q9HAB3 445 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms