RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 MON2Q7Z3U7 1717 aa16.57■□□□□ 0.24
RNF4-216ENST00000511859 NME9Q86XW9 330 aa16.57■□□□□ 0.24
RNF4-216ENST00000511859 ZNF526Q8TF50 670 aaPredicted RBP16.57■□□□□ 0.24
RNF4-216ENST00000511859 IP6K1Q92551 441 aa16.57■□□□□ 0.24
RNF4-216ENST00000511859 NSD2O96028 1365 aa16.54■□□□□ 0.24
RNF4-216ENST00000511859 USP47Q96K76 1375 aa16.54■□□□□ 0.24
RNF4-216ENST00000511859 APLP1P51693 650 aa16.54■□□□□ 0.24
RNF4-216ENST00000511859 MSL1Q68DK7 614 aa16.54■□□□□ 0.24
RNF4-216ENST00000511859 ZCRB1Q8TBF4 217 aaKnown RBP16.54■□□□□ 0.24
RNF4-216ENST00000511859 SBNO2Q9Y2G9 1366 aa16.53■□□□□ 0.24
RNF4-216ENST00000511859 FAM208AQ9UK61 1670 aaKnown RBP16.53■□□□□ 0.24
RNF4-216ENST00000511859 KIF3CO14782 793 aa16.52■□□□□ 0.24
RNF4-216ENST00000511859 HDGFL2Q7Z4V5 671 aaPredicted RBP16.52■□□□□ 0.24
RNF4-216ENST00000511859 LTV1Q96GA3 475 aaPredicted RBP16.52■□□□□ 0.24
RNF4-216ENST00000511859 DOT1LQ8TEK3 1739 aa16.52■□□□□ 0.23
RNF4-216ENST00000511859 L3MBTL2Q969R5 705 aa16.51■□□□□ 0.23
RNF4-216ENST00000511859 DNAJC5GQ8N7S2 189 aa16.51■□□□□ 0.23
RNF4-216ENST00000511859 ROCK2O75116 1388 aaKnown RBP16.5■□□□□ 0.23
RNF4-216ENST00000511859 TMC1Q8TDI8 760 aa16.5■□□□□ 0.23
RNF4-216ENST00000511859 CGNL1Q0VF96 1302 aa16.49■□□□□ 0.23
RNF4-216ENST00000511859 IGSF1Q8N6C5 1336 aa16.49■□□□□ 0.23
RNF4-216ENST00000511859 CD163L1Q9NR16 1453 aa16.49■□□□□ 0.23
RNF4-216ENST00000511859 TERF2IPQ9NYB0 399 aa16.49■□□□□ 0.23
RNF4-216ENST00000511859 EDC4Q6P2E9 1401 aaKnown RBP16.49■□□□□ 0.23
RNF4-216ENST00000511859 TOMM70O94826 608 aa16.48■□□□□ 0.23
RNF4-216ENST00000511859 SLC12A5Q9H2X9 1139 aa16.47■□□□□ 0.23
RNF4-216ENST00000511859 C5P01031 1676 aa16.47■□□□□ 0.23
RNF4-216ENST00000511859 TAF1LQ8IZX4 1826 aa16.46■□□□□ 0.23
RNF4-216ENST00000511859 PCNTO95613 3336 aa16.46■□□□□ 0.22
RNF4-216ENST00000511859 HOXC9P31274 260 aa16.45■□□□□ 0.22
RNF4-216ENST00000511859 AMPHP49418 695 aa16.45■□□□□ 0.22
RNF4-216ENST00000511859 PUS7Q96PZ0 661 aaKnown RBP16.44■□□□□ 0.22
RNF4-216ENST00000511859 MAP3K19Q56UN5 1328 aa16.44■□□□□ 0.22
RNF4-216ENST00000511859 RGPD2P0DJD1 1756 aa16.43■□□□□ 0.22
RNF4-216ENST00000511859 COG3Q96JB2 828 aa16.43■□□□□ 0.22
RNF4-216ENST00000511859 AK7Q96M32 723 aa16.43■□□□□ 0.22
RNF4-216ENST00000511859 RAPGEF4Q8WZA2 1011 aa16.42■□□□□ 0.22
RNF4-216ENST00000511859 SMARCC1Q92922 1105 aaPredicted RBP16.42■□□□□ 0.22
RNF4-216ENST00000511859 MEGF6O75095 1541 aa16.42■□□□□ 0.22
RNF4-216ENST00000511859 NSD3Q9BZ95 1437 aa16.42■□□□□ 0.22
RNF4-216ENST00000511859 A0A1W2PP64 1363 aa16.41■□□□□ 0.22
RNF4-216ENST00000511859 PALLDQ8WX93 1383 aa16.41■□□□□ 0.22
RNF4-216ENST00000511859 NBPF6Q5VWK0 638 aa16.41■□□□□ 0.22
RNF4-216ENST00000511859 MPRIPQ6WCQ1 1025 aa16.41■□□□□ 0.22
RNF4-216ENST00000511859 NBPF4Q96M43 638 aa16.41■□□□□ 0.22
RNF4-216ENST00000511859 WWC3Q9ULE0 1092 aa16.41■□□□□ 0.22
RNF4-216ENST00000511859 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.4■□□□□ 0.22
RNF4-216ENST00000511859 TATP17735 454 aaPredicted RBP16.4■□□□□ 0.22
RNF4-216ENST00000511859 C4BP0C0L5 1744 aa16.39■□□□□ 0.21
RNF4-216ENST00000511859 SSFA2P28290 1259 aa16.39■□□□□ 0.21
RNF4-216ENST00000511859 UBR3Q6ZT12 1888 aa16.39■□□□□ 0.21
RNF4-216ENST00000511859 PCDH11XQ9BZA7 1347 aa16.39■□□□□ 0.21
RNF4-216ENST00000511859 PCDH11YQ9BZA8 1340 aa16.39■□□□□ 0.21
RNF4-216ENST00000511859 CICQ96RK0 1608 aaPredicted RBP16.38■□□□□ 0.21
RNF4-216ENST00000511859 PHF14O94880 888 aa16.38■□□□□ 0.21
RNF4-216ENST00000511859 FBLN1P23142 703 aa16.38■□□□□ 0.21
RNF4-216ENST00000511859 TGFB2P61812 414 aa16.38■□□□□ 0.21
RNF4-216ENST00000511859 AMIGO3Q86WK7 504 aa16.38■□□□□ 0.21
RNF4-216ENST00000511859 KLRG1Q96E93 195 aa16.38■□□□□ 0.21
RNF4-216ENST00000511859 COL13A1Q5TAT6 717 aaPredicted RBP16.37■□□□□ 0.21
RNF4-216ENST00000511859 JMYQ8N9B5 988 aa16.37■□□□□ 0.21
RNF4-216ENST00000511859 RBM46Q8TBY0 533 aaKnown RBP16.37■□□□□ 0.21
RNF4-216ENST00000511859 RTL1A6NKG5 1358 aa16.36■□□□□ 0.21
RNF4-216ENST00000511859 ITGB4P16144 1822 aa16.36■□□□□ 0.21
RNF4-216ENST00000511859 CARD11Q9BXL7 1154 aa16.36■□□□□ 0.21
RNF4-216ENST00000511859 C16orf71Q8IYS4 520 aaPredicted RBP16.35■□□□□ 0.21
RNF4-216ENST00000511859 USHBP1Q8N6Y0 703 aa16.35■□□□□ 0.21
RNF4-216ENST00000511859 SIN3AQ96ST3 1273 aa16.35■□□□□ 0.21
RNF4-216ENST00000511859 WDR90Q96KV7 1748 aa16.35■□□□□ 0.21
RNF4-216ENST00000511859 SMG6Q86US8 1419 aaKnown RBP16.34■□□□□ 0.21
RNF4-216ENST00000511859 TOGARAM1Q9Y4F4 1720 aa16.34■□□□□ 0.21
RNF4-216ENST00000511859 FSTL1Q12841 308 aa16.34■□□□□ 0.21
RNF4-216ENST00000511859 ARHGAP27Q6ZUM4 889 aa16.34■□□□□ 0.21
RNF4-216ENST00000511859 NMRK2Q9NPI5 230 aa16.34■□□□□ 0.21
RNF4-216ENST00000511859 BCS1LQ9Y276 419 aa16.34■□□□□ 0.21
RNF4-216ENST00000511859 KIF13BQ9NQT8 1826 aa16.33■□□□□ 0.2
RNF4-216ENST00000511859 LOC102724428A0A0B4J2F2 783 aa16.33■□□□□ 0.2
RNF4-216ENST00000511859 CYP27B1O15528 508 aa16.33■□□□□ 0.2
RNF4-216ENST00000511859 SIK1P57059 783 aa16.33■□□□□ 0.2
RNF4-216ENST00000511859 SMIM5Q71RC9 77 aa16.33■□□□□ 0.2
RNF4-216ENST00000511859 PIGBQ92521 554 aa16.33■□□□□ 0.2
RNF4-216ENST00000511859 SLC24A1O60721 1099 aa16.32■□□□□ 0.2
RNF4-216ENST00000511859 MMP10P09238 476 aa16.32■□□□□ 0.2
RNF4-216ENST00000511859 PRELPP51888 382 aa16.32■□□□□ 0.2
RNF4-216ENST00000511859 NEUROD1Q13562 356 aa16.32■□□□□ 0.2
RNF4-216ENST00000511859 RRS1Q15050 365 aaKnown RBP16.32■□□□□ 0.2
RNF4-216ENST00000511859 A0A0G2JLW4 131 aa16.31■□□□□ 0.2
RNF4-216ENST00000511859 NKX1-1Q15270 411 aaPredicted RBP16.31■□□□□ 0.2
RNF4-216ENST00000511859 TNS4Q8IZW8 715 aa16.31■□□□□ 0.2
RNF4-216ENST00000511859 NLGN1Q8N2Q7 840 aa16.31■□□□□ 0.2
RNF4-216ENST00000511859 LINC00116Q8NCU8 138 aa16.31■□□□□ 0.2
RNF4-216ENST00000511859 MAP2P11137 1827 aaKnown RBP16.31■□□□□ 0.2
RNF4-216ENST00000511859 PXDNLA1KZ92 1463 aa16.3■□□□□ 0.2
RNF4-216ENST00000511859 GNPATO15228 680 aa16.3■□□□□ 0.2
RNF4-216ENST00000511859 CAPN15O75808 1086 aa16.3■□□□□ 0.2
RNF4-216ENST00000511859 N4BP2Q86UW6 1770 aaPredicted RBP16.3■□□□□ 0.2
RNF4-216ENST00000511859 INSRP06213 1382 aa16.29■□□□□ 0.2
RNF4-216ENST00000511859 PLEKHG2Q9H7P9 1386 aa16.29■□□□□ 0.2
RNF4-216ENST00000511859 KDM2BQ8NHM5 1336 aa16.28■□□□□ 0.2
RNF4-216ENST00000511859 FYB1O15117 783 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms