RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 ATF3P18847 181 aa13.98□□□□□ -0.17
SH3RF1-203ENST00000508685 NFKBIBQ15653 356 aa13.98□□□□□ -0.17
SH3RF1-203ENST00000508685 FTSJ3Q8IY81 847 aaKnown RBP13.98□□□□□ -0.17
SH3RF1-203ENST00000508685 NOB1Q9ULX3 412 aaKnown RBP13.98□□□□□ -0.17
SH3RF1-203ENST00000508685 IGHDP01880 384 aa13.97□□□□□ -0.17
SH3RF1-203ENST00000508685 MTHFSDQ2M296 383 aaKnown RBP13.97□□□□□ -0.17
SH3RF1-203ENST00000508685 BECN1Q14457 450 aa13.97□□□□□ -0.17
SH3RF1-203ENST00000508685 LMOD2Q6P5Q4 547 aa13.97□□□□□ -0.17
SH3RF1-203ENST00000508685 CADPS2Q86UW7 1296 aa13.97□□□□□ -0.17
SH3RF1-203ENST00000508685 DZIP1LQ8IYY4 767 aaKnown RBP13.97□□□□□ -0.17
SH3RF1-203ENST00000508685 SLAIN2Q9P270 581 aa13.97□□□□□ -0.17
SH3RF1-203ENST00000508685 RTL1A6NKG5 1358 aa13.96□□□□□ -0.17
SH3RF1-203ENST00000508685 ZBTB7CA1YPR0 619 aa13.96□□□□□ -0.17
SH3RF1-203ENST00000508685 VAMP4O75379 141 aa13.96□□□□□ -0.17
SH3RF1-203ENST00000508685 GSE1Q14687 1217 aa13.96□□□□□ -0.17
SH3RF1-203ENST00000508685 ATF7IPQ6VMQ6 1270 aa13.96□□□□□ -0.17
SH3RF1-203ENST00000508685 RWDD1Q9H446 243 aaPredicted RBP13.96□□□□□ -0.17
SH3RF1-203ENST00000508685 MVPQ14764 893 aaKnown RBP13.95□□□□□ -0.18
SH3RF1-203ENST00000508685 USHBP1Q8N6Y0 703 aa13.95□□□□□ -0.18
SH3RF1-203ENST00000508685 C8orf58Q8NAV2 365 aa13.95□□□□□ -0.18
SH3RF1-203ENST00000508685 MST1RQ04912 1400 aa13.95□□□□□ -0.18
SH3RF1-203ENST00000508685 TRPM3Q9HCF6 1732 aaPredicted RBP13.95□□□□□ -0.18
SH3RF1-203ENST00000508685 KIF16BQ96L93 1317 aa13.95□□□□□ -0.18
SH3RF1-203ENST00000508685 ALDH1L2Q3SY69 923 aa13.95□□□□□ -0.18
SH3RF1-203ENST00000508685 TWISTNBQ3B726 338 aaPredicted RBP13.94□□□□□ -0.18
SH3RF1-203ENST00000508685 KRT28Q7Z3Y7 464 aa13.94□□□□□ -0.18
SH3RF1-203ENST00000508685 DDX17Q92841 729 aaKnown RBP13.94□□□□□ -0.18
SH3RF1-203ENST00000508685 KIF1AQ12756 1690 aa13.94□□□□□ -0.18
SH3RF1-203ENST00000508685 GCP02774 474 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 KRT24Q2M2I5 525 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 KCNH5Q8NCM2 988 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 IP6K1Q92551 441 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 UPF2Q9HAU5 1272 aaKnown RBP13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 PCDHB15Q9Y5E8 787 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 DCCP43146 1447 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 HSPA1LP34931 641 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 ZNF428Q96B54 188 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 CRB1P82279 1406 aa13.93□□□□□ -0.18
SH3RF1-203ENST00000508685 ITPRIPQ8IWB1 547 aa13.92□□□□□ -0.18
SH3RF1-203ENST00000508685 SLIT3O75094 1523 aa13.92□□□□□ -0.18
SH3RF1-203ENST00000508685 CHL1O00533 1208 aa13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 TMEM57Q8N5G2 664 aa13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 MIS18AQ9NYP9 233 aa13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 NBPF6Q5VWK0 638 aa13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 MRPL50Q8N5N7 158 aaKnown RBP13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 GAS2L2Q8NHY3 880 aa13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 RTF1Q92541 710 aaKnown RBP13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 NBPF4Q96M43 638 aa13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 PHRF1Q9P1Y6 1649 aaKnown RBP13.91□□□□□ -0.18
SH3RF1-203ENST00000508685 USP19O94966 1318 aa13.9□□□□□ -0.18
SH3RF1-203ENST00000508685 IPO8O15397 1037 aaKnown RBP13.9□□□□□ -0.18
SH3RF1-203ENST00000508685 BRPF1P55201 1214 aaPredicted RBP13.9□□□□□ -0.18
SH3RF1-203ENST00000508685 ARHGEF25Q86VW2 580 aa13.9□□□□□ -0.18
SH3RF1-203ENST00000508685 LRRC59Q96AG4 307 aaKnown RBP13.9□□□□□ -0.18
SH3RF1-203ENST00000508685 SLC4A3P48751 1232 aa13.89□□□□□ -0.19
SH3RF1-203ENST00000508685 ALS2Q96Q42 1657 aa13.88□□□□□ -0.19
SH3RF1-203ENST00000508685 DDX19BQ9UMR2 479 aa13.88□□□□□ -0.19
SH3RF1-203ENST00000508685 RGPD2P0DJD1 1756 aa13.88□□□□□ -0.19
SH3RF1-203ENST00000508685 AXIN2Q9Y2T1 843 aa13.88□□□□□ -0.19
SH3RF1-203ENST00000508685 ROBO1Q9Y6N7 1651 aa13.87□□□□□ -0.19
SH3RF1-203ENST00000508685 MED1Q15648 1581 aaPredicted RBP13.87□□□□□ -0.19
SH3RF1-203ENST00000508685 LRRC37A3O60309 1634 aa13.87□□□□□ -0.19
SH3RF1-203ENST00000508685 GNAT3A8MTJ3 354 aa13.87□□□□□ -0.19
SH3RF1-203ENST00000508685 MAP3K5Q99683 1374 aa13.87□□□□□ -0.19
SH3RF1-203ENST00000508685 TSPYL4Q9UJ04 414 aa13.86□□□□□ -0.19
SH3RF1-203ENST00000508685 ZC3H6P61129 1189 aaKnown RBP13.86□□□□□ -0.19
SH3RF1-203ENST00000508685 BRINP3Q76B58 766 aa13.86□□□□□ -0.19
SH3RF1-203ENST00000508685 PDZRN3Q9UPQ7 1066 aa13.86□□□□□ -0.19
SH3RF1-203ENST00000508685 KIAA0232Q92628 1395 aa13.85□□□□□ -0.19
SH3RF1-203ENST00000508685 IL17REQ8NFR9 667 aa13.85□□□□□ -0.19
SH3RF1-203ENST00000508685 ZBTB40Q9NUA8 1239 aa13.85□□□□□ -0.19
SH3RF1-203ENST00000508685 HDAC1Q13547 482 aaPredicted RBP13.85□□□□□ -0.19
SH3RF1-203ENST00000508685 ANKRD24Q8TF21 1146 aa13.85□□□□□ -0.19
SH3RF1-203ENST00000508685 ARHGAP45Q92619 1136 aa13.85□□□□□ -0.19
SH3RF1-203ENST00000508685 NPHP3Q7Z494 1330 aa13.84□□□□□ -0.19
SH3RF1-203ENST00000508685 HTATSF1O43719 755 aaKnown RBP13.84□□□□□ -0.19
SH3RF1-203ENST00000508685 CABLES1Q8TDN4 633 aa13.84□□□□□ -0.19
SH3RF1-203ENST00000508685 ABCC4O15439 1325 aa13.84□□□□□ -0.19
SH3RF1-203ENST00000508685 TBC1D32Q96NH3 1257 aa13.83□□□□□ -0.2
SH3RF1-203ENST00000508685 CHMP4BQ9H444 224 aaKnown RBP13.83□□□□□ -0.2
SH3RF1-203ENST00000508685 PXDNQ92626 1479 aa13.83□□□□□ -0.2
SH3RF1-203ENST00000508685 RGPD5Q99666 1765 aa13.82□□□□□ -0.2
SH3RF1-203ENST00000508685 TNS3Q68CZ2 1445 aa13.82□□□□□ -0.2
SH3RF1-203ENST00000508685 FRAT2O75474 233 aaPredicted RBP13.81□□□□□ -0.2
SH3RF1-203ENST00000508685 ERBB3P21860 1342 aa13.81□□□□□ -0.2
SH3RF1-203ENST00000508685 RGS12O14924 1447 aa13.81□□□□□ -0.2
SH3RF1-203ENST00000508685 ZBTB7BO15156 539 aaPredicted RBP13.81□□□□□ -0.2
SH3RF1-203ENST00000508685 SEC24BO95487 1268 aa13.81□□□□□ -0.2
SH3RF1-203ENST00000508685 HAP1P54257 671 aaPredicted RBP13.81□□□□□ -0.2
SH3RF1-203ENST00000508685 NCAPD2Q15021 1401 aa13.81□□□□□ -0.2
SH3RF1-203ENST00000508685 C1orf115Q9H7X2 142 aa13.8□□□□□ -0.2
SH3RF1-203ENST00000508685 CEMIPQ8WUJ3 1361 aa13.8□□□□□ -0.2
SH3RF1-203ENST00000508685 SLC4A2P04920 1241 aa13.8□□□□□ -0.2
SH3RF1-203ENST00000508685 API5Q9BZZ5 524 aaKnown RBP13.8□□□□□ -0.2
SH3RF1-203ENST00000508685 LGR6Q9HBX8 967 aa13.8□□□□□ -0.2
SH3RF1-203ENST00000508685 PHLPP1O60346 1717 aa13.79□□□□□ -0.2
SH3RF1-203ENST00000508685 CAMTA1Q9Y6Y1 1673 aa13.79□□□□□ -0.2
SH3RF1-203ENST00000508685 SPATA31A3Q5VYP0 1347 aa13.79□□□□□ -0.2
SH3RF1-203ENST00000508685 ZNF530Q6P9A1 599 aaPredicted RBP13.79□□□□□ -0.2
SH3RF1-203ENST00000508685 AHDC1Q5TGY3 1603 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms