RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ADCY9O60503 1353 aa23.61■■□□□ 1.37
VIM-208ENST00000497849 ROCK2O75116 1388 aaKnown RBP23.61■■□□□ 1.37
VIM-208ENST00000497849 HSPA6P17066 643 aa23.6■■□□□ 1.37
VIM-208ENST00000497849 IP6K1Q92551 441 aa23.6■■□□□ 1.37
VIM-208ENST00000497849 GPBP1L1Q9HC44 474 aaPredicted RBP23.6■■□□□ 1.37
VIM-208ENST00000497849 CCNL1Q9UK58 526 aaPredicted RBP23.6■■□□□ 1.37
VIM-208ENST00000497849 MSH5O43196 834 aa23.59■■□□□ 1.37
VIM-208ENST00000497849 MSL1Q68DK7 614 aa23.59■■□□□ 1.37
VIM-208ENST00000497849 LTV1Q96GA3 475 aaPredicted RBP23.58■■□□□ 1.37
VIM-208ENST00000497849 RGPD2P0DJD1 1756 aa23.57■■□□□ 1.36
VIM-208ENST00000497849 CD2APQ9Y5K6 639 aa23.56■■□□□ 1.36
VIM-208ENST00000497849 EDC4Q6P2E9 1401 aaKnown RBP23.56■■□□□ 1.36
VIM-208ENST00000497849 C5P01031 1676 aa23.54■■□□□ 1.36
VIM-208ENST00000497849 TMC1Q8TDI8 760 aa23.54■■□□□ 1.36
VIM-208ENST00000497849 ZNF526Q8TF50 670 aaPredicted RBP23.54■■□□□ 1.36
VIM-208ENST00000497849 SLC12A5Q9H2X9 1139 aa23.54■■□□□ 1.36
VIM-208ENST00000497849 MEGF6O75095 1541 aa23.54■■□□□ 1.36
VIM-208ENST00000497849 HDGFL2Q7Z4V5 671 aaPredicted RBP23.53■■□□□ 1.36
VIM-208ENST00000497849 ZCRB1Q8TBF4 217 aaKnown RBP23.53■■□□□ 1.36
VIM-208ENST00000497849 USP47Q96K76 1375 aa23.52■■□□□ 1.36
VIM-208ENST00000497849 TAF1LQ8IZX4 1826 aa23.52■■□□□ 1.36
VIM-208ENST00000497849 A0A1W2PP64 1363 aa23.52■■□□□ 1.36
VIM-208ENST00000497849 HOXC9P31274 260 aa23.49■■□□□ 1.35
VIM-208ENST00000497849 SIN3AQ96ST3 1273 aa23.49■■□□□ 1.35
VIM-208ENST00000497849 MAP3K19Q56UN5 1328 aa23.49■■□□□ 1.35
VIM-208ENST00000497849 FBLN1P23142 703 aa23.47■■□□□ 1.35
VIM-208ENST00000497849 KIF3CO14782 793 aa23.46■■□□□ 1.35
VIM-208ENST00000497849 TERF2IPQ9NYB0 399 aa23.46■■□□□ 1.35
VIM-208ENST00000497849 TOGARAM1Q9Y4F4 1720 aa23.45■■□□□ 1.34
VIM-208ENST00000497849 FLAD1Q8NFF5 587 aa23.45■■□□□ 1.34
VIM-208ENST00000497849 IGSF1Q8N6C5 1336 aa23.44■■□□□ 1.34
VIM-208ENST00000497849 AMIGO3Q86WK7 504 aa23.44■■□□□ 1.34
VIM-208ENST00000497849 WWC3Q9ULE0 1092 aa23.44■■□□□ 1.34
VIM-208ENST00000497849 NBPF6Q5VWK0 638 aa23.43■■□□□ 1.34
VIM-208ENST00000497849 NBPF4Q96M43 638 aa23.43■■□□□ 1.34
VIM-208ENST00000497849 C4BP0C0L5 1744 aa23.42■■□□□ 1.34
VIM-208ENST00000497849 AMPHP49418 695 aa23.42■■□□□ 1.34
VIM-208ENST00000497849 PALLDQ8WX93 1383 aa23.41■■□□□ 1.34
VIM-208ENST00000497849 UBR3Q6ZT12 1888 aa23.41■■□□□ 1.34
VIM-208ENST00000497849 USHBP1Q8N6Y0 703 aa23.4■■□□□ 1.34
VIM-208ENST00000497849 COG3Q96JB2 828 aa23.4■■□□□ 1.34
VIM-208ENST00000497849 CGNL1Q0VF96 1302 aa23.39■■□□□ 1.34
VIM-208ENST00000497849 NEUROD1Q13562 356 aa23.39■■□□□ 1.33
VIM-208ENST00000497849 SMIM5Q71RC9 77 aa23.38■■□□□ 1.33
VIM-208ENST00000497849 CARD11Q9BXL7 1154 aa23.38■■□□□ 1.33
VIM-208ENST00000497849 ITGB4P16144 1822 aa23.38■■□□□ 1.33
VIM-208ENST00000497849 CICQ96RK0 1608 aaPredicted RBP23.37■■□□□ 1.33
VIM-208ENST00000497849 PUS7Q96PZ0 661 aaKnown RBP23.37■■□□□ 1.33
VIM-208ENST00000497849 RTL1A6NKG5 1358 aa23.37■■□□□ 1.33
VIM-208ENST00000497849 HMGB2P26583 209 aaKnown RBP23.36■■□□□ 1.33
VIM-208ENST00000497849 MPRIPQ6WCQ1 1025 aa23.36■■□□□ 1.33
VIM-208ENST00000497849 DNAJC5GQ8N7S2 189 aa23.36■■□□□ 1.33
VIM-208ENST00000497849 APLP1P51693 650 aa23.35■■□□□ 1.33
VIM-208ENST00000497849 RAPGEF4Q8WZA2 1011 aa23.35■■□□□ 1.33
VIM-208ENST00000497849 AK7Q96M32 723 aa23.35■■□□□ 1.33
VIM-208ENST00000497849 PHF14O94880 888 aa23.34■■□□□ 1.33
VIM-208ENST00000497849 RRS1Q15050 365 aaKnown RBP23.34■■□□□ 1.33
VIM-208ENST00000497849 PCDH11XQ9BZA7 1347 aa23.33■■□□□ 1.33
VIM-208ENST00000497849 PCDH11YQ9BZA8 1340 aa23.33■■□□□ 1.33
VIM-208ENST00000497849 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.33■■□□□ 1.33
VIM-208ENST00000497849 TATP17735 454 aaPredicted RBP23.33■■□□□ 1.33
VIM-208ENST00000497849 MAP2P11137 1827 aaKnown RBP23.33■■□□□ 1.32
VIM-208ENST00000497849 CYP27B1O15528 508 aa23.32■■□□□ 1.32
VIM-208ENST00000497849 KIAA1551Q9HCM1 1747 aa23.31■■□□□ 1.32
VIM-208ENST00000497849 TOMM70O94826 608 aa23.3■■□□□ 1.32
VIM-208ENST00000497849 SMARCC1Q92922 1105 aaPredicted RBP23.3■■□□□ 1.32
VIM-208ENST00000497849 KIF13BQ9NQT8 1826 aa23.29■■□□□ 1.32
VIM-208ENST00000497849 NSD3Q9BZ95 1437 aa23.29■■□□□ 1.32
VIM-208ENST00000497849 SMG6Q86US8 1419 aaKnown RBP23.28■■□□□ 1.32
VIM-208ENST00000497849 SSFA2P28290 1259 aa23.28■■□□□ 1.32
VIM-208ENST00000497849 HSP90AB2PQ58FF8 381 aa23.27■■□□□ 1.32
VIM-208ENST00000497849 LINC00116Q8NCU8 138 aa23.27■■□□□ 1.32
VIM-208ENST00000497849 PIGBQ92521 554 aa23.27■■□□□ 1.32
VIM-208ENST00000497849 PXDNLA1KZ92 1463 aa23.27■■□□□ 1.32
VIM-208ENST00000497849 PKD1L3Q7Z443 1732 aa23.27■■□□□ 1.32
VIM-208ENST00000497849 N4BP2Q86UW6 1770 aaPredicted RBP23.27■■□□□ 1.32
VIM-208ENST00000497849 WDR90Q96KV7 1748 aa23.26■■□□□ 1.31
VIM-208ENST00000497849 TESK2Q96S53 571 aa23.26■■□□□ 1.31
VIM-208ENST00000497849 FYB1O15117 783 aa23.25■■□□□ 1.31
VIM-208ENST00000497849 INSRP06213 1382 aa23.25■■□□□ 1.31
VIM-208ENST00000497849 GGNBP2Q9H3C7 697 aa23.24■■□□□ 1.31
VIM-208ENST00000497849 NMRK2Q9NPI5 230 aa23.24■■□□□ 1.31
VIM-208ENST00000497849 LOC102724428A0A0B4J2F2 783 aa23.23■■□□□ 1.31
VIM-208ENST00000497849 SIK1P57059 783 aa23.23■■□□□ 1.31
VIM-208ENST00000497849 MMP10P09238 476 aa23.22■■□□□ 1.31
VIM-208ENST00000497849 NKX1-1Q15270 411 aaPredicted RBP23.22■■□□□ 1.31
VIM-208ENST00000497849 ITPK1Q13572 414 aa23.21■■□□□ 1.31
VIM-208ENST00000497849 FLT4P35916 1363 aa23.2■■□□□ 1.3
VIM-208ENST00000497849 GNPATO15228 680 aa23.2■■□□□ 1.3
VIM-208ENST00000497849 BCS1LQ9Y276 419 aa23.2■■□□□ 1.3
VIM-208ENST00000497849 BRCA1P38398 1863 aaKnown RBP23.19■■□□□ 1.3
VIM-208ENST00000497849 A0A0G2JLW4 131 aa23.19■■□□□ 1.3
VIM-208ENST00000497849 TGFB2P61812 414 aa23.19■■□□□ 1.3
VIM-208ENST00000497849 COL13A1Q5TAT6 717 aaPredicted RBP23.19■■□□□ 1.3
VIM-208ENST00000497849 ST20-MTHFSA0A0A6YYL1 179 aa23.18■■□□□ 1.3
VIM-208ENST00000497849 HTRA3P83110 453 aa23.18■■□□□ 1.3
VIM-208ENST00000497849 NCAPD2Q15021 1401 aa23.17■■□□□ 1.3
VIM-208ENST00000497849 C10orf71Q711Q0 1435 aa23.17■■□□□ 1.3
VIM-208ENST00000497849 KIF24Q5T7B8 1368 aa23.17■■□□□ 1.3
VIM-208ENST00000497849 ARHGAP27Q6ZUM4 889 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms