RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 ZCRB1Q8TBF4 217 aaKnown RBP20.08■□□□□ 0.81
VARS-228ENST00000495010 ANKRD36BQ8N2N9 1353 aa20.08■□□□□ 0.8
VARS-228ENST00000495010 MAP3K19Q56UN5 1328 aa20.07■□□□□ 0.8
VARS-228ENST00000495010 QSER1Q2KHR3 1735 aa20.07■□□□□ 0.8
VARS-228ENST00000495010 SLC24A1O60721 1099 aa20.06■□□□□ 0.8
VARS-228ENST00000495010 CCNL1Q9UK58 526 aaPredicted RBP20.06■□□□□ 0.8
VARS-228ENST00000495010 DOT1LQ8TEK3 1739 aa20.04■□□□□ 0.8
VARS-228ENST00000495010 GIGYF1O75420 1035 aaPredicted RBP20.03■□□□□ 0.8
VARS-228ENST00000495010 USP47Q96K76 1375 aa20.03■□□□□ 0.8
VARS-228ENST00000495010 FBLN1P23142 703 aa20.02■□□□□ 0.8
VARS-228ENST00000495010 ST20-MTHFSA0A0A6YYL1 179 aa20.01■□□□□ 0.79
VARS-228ENST00000495010 HMGB2P26583 209 aaKnown RBP20.01■□□□□ 0.79
VARS-228ENST00000495010 NLGN2Q8NFZ4 835 aa20.01■□□□□ 0.79
VARS-228ENST00000495010 RAPGEF4Q8WZA2 1011 aa20.01■□□□□ 0.79
VARS-228ENST00000495010 SMG6Q86US8 1419 aaKnown RBP20.01■□□□□ 0.79
VARS-228ENST00000495010 NSD2O96028 1365 aa20■□□□□ 0.79
VARS-228ENST00000495010 LY75O60449 1722 aa20■□□□□ 0.79
VARS-228ENST00000495010 GRIN3BO60391 1043 aa20■□□□□ 0.79
VARS-228ENST00000495010 CGNL1Q0VF96 1302 aa20■□□□□ 0.79
VARS-228ENST00000495010 TUBGCP6Q96RT7 1819 aa19.99■□□□□ 0.79
VARS-228ENST00000495010 RTL1A6NKG5 1358 aa19.99■□□□□ 0.79
VARS-228ENST00000495010 MEGF6O75095 1541 aa19.99■□□□□ 0.79
VARS-228ENST00000495010 RRS1Q15050 365 aaKnown RBP19.99■□□□□ 0.79
VARS-228ENST00000495010 COL24A1Q17RW2 1714 aa19.99■□□□□ 0.79
VARS-228ENST00000495010 RGPD2P0DJD1 1756 aa19.98■□□□□ 0.79
VARS-228ENST00000495010 TATP17735 454 aaPredicted RBP19.98■□□□□ 0.79
VARS-228ENST00000495010 NBPF6Q5VWK0 638 aa19.98■□□□□ 0.79
VARS-228ENST00000495010 COL23A1Q86Y22 540 aaPredicted RBP19.98■□□□□ 0.79
VARS-228ENST00000495010 USHBP1Q8N6Y0 703 aa19.98■□□□□ 0.79
VARS-228ENST00000495010 NBPF4Q96M43 638 aa19.98■□□□□ 0.79
VARS-228ENST00000495010 TESK2Q96S53 571 aa19.98■□□□□ 0.79
VARS-228ENST00000495010 UTRNP46939 3433 aa19.98■□□□□ 0.79
VARS-228ENST00000495010 GGNBP2Q9H3C7 697 aa19.97■□□□□ 0.79
VARS-228ENST00000495010 MSL1Q68DK7 614 aa19.96■□□□□ 0.79
VARS-228ENST00000495010 SHANK3Q9BYB0 1731 aa19.96■□□□□ 0.79
VARS-228ENST00000495010 FLAD1Q8NFF5 587 aa19.95■□□□□ 0.78
VARS-228ENST00000495010 FYB1O15117 783 aa19.94■□□□□ 0.78
VARS-228ENST00000495010 TMF1P82094 1093 aa19.94■□□□□ 0.78
VARS-228ENST00000495010 PCDH11XQ9BZA7 1347 aa19.94■□□□□ 0.78
VARS-228ENST00000495010 PCDH11YQ9BZA8 1340 aa19.94■□□□□ 0.78
VARS-228ENST00000495010 YBX3P16989 372 aaKnown RBP eCLIP19.93■□□□□ 0.787e-8■□□□□ 10.4
VARS-228ENST00000495010 MPRIPQ6WCQ1 1025 aa19.92■□□□□ 0.78
VARS-228ENST00000495010 PALLDQ8WX93 1383 aa19.91■□□□□ 0.78
VARS-228ENST00000495010 HSP90AB2PQ58FF8 381 aa19.9■□□□□ 0.78
VARS-228ENST00000495010 CD2APQ9Y5K6 639 aa19.9■□□□□ 0.78
VARS-228ENST00000495010 INSRP06213 1382 aa19.9■□□□□ 0.78
VARS-228ENST00000495010 C5P01031 1676 aa19.89■□□□□ 0.77
VARS-228ENST00000495010 FLT4P35916 1363 aa19.89■□□□□ 0.77
VARS-228ENST00000495010 SMARCC1Q92922 1105 aaPredicted RBP19.89■□□□□ 0.77
VARS-228ENST00000495010 AK7Q96M32 723 aa19.89■□□□□ 0.77
VARS-228ENST00000495010 CDCA8Q53HL2 280 aa19.88■□□□□ 0.77
VARS-228ENST00000495010 KIF24Q5T7B8 1368 aa19.86■□□□□ 0.77
VARS-228ENST00000495010 CYP27B1O15528 508 aa19.85■□□□□ 0.77
VARS-228ENST00000495010 PHF14O94880 888 aa19.85■□□□□ 0.77
VARS-228ENST00000495010 ATP10DQ9P241 1426 aa19.85■□□□□ 0.77
VARS-228ENST00000495010 GPBP1L1Q9HC44 474 aaPredicted RBP19.84■□□□□ 0.77
VARS-228ENST00000495010 KIF20BQ96Q89 1820 aa19.83■□□□□ 0.77
VARS-228ENST00000495010 PPM1GO15355 546 aaPredicted RBP19.83■□□□□ 0.77
VARS-228ENST00000495010 SPG7Q9UQ90 795 aa19.83■□□□□ 0.77
VARS-228ENST00000495010 NSD3Q9BZ95 1437 aa19.83■□□□□ 0.76
VARS-228ENST00000495010 TAF1LQ8IZX4 1826 aa19.82■□□□□ 0.76
VARS-228ENST00000495010 PIGBQ92521 554 aa19.81■□□□□ 0.76
VARS-228ENST00000495010 EMILIN1Q9Y6C2 1016 aa19.81■□□□□ 0.76
VARS-228ENST00000495010 C4BP0C0L5 1744 aa19.81■□□□□ 0.76
VARS-228ENST00000495010 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.8■□□□□ 0.76
VARS-228ENST00000495010 ZNF526Q8TF50 670 aaPredicted RBP19.8■□□□□ 0.76
VARS-228ENST00000495010 IGSF1Q8N6C5 1336 aa19.79■□□□□ 0.76
VARS-228ENST00000495010 TMOD3Q9NYL9 352 aa19.79■□□□□ 0.76
VARS-228ENST00000495010 ITGB4P16144 1822 aa19.79■□□□□ 0.76
VARS-228ENST00000495010 LOC102724428A0A0B4J2F2 783 aa19.78■□□□□ 0.76
VARS-228ENST00000495010 SSFA2P28290 1259 aa19.78■□□□□ 0.76
VARS-228ENST00000495010 SIK1P57059 783 aa19.78■□□□□ 0.76
VARS-228ENST00000495010 NKX1-1Q15270 411 aaPredicted RBP19.78■□□□□ 0.76
VARS-228ENST00000495010 WWC3Q9ULE0 1092 aa19.78■□□□□ 0.76
VARS-228ENST00000495010 TOGARAM1Q9Y4F4 1720 aa19.77■□□□□ 0.76
VARS-228ENST00000495010 SMIM5Q71RC9 77 aa19.76■□□□□ 0.75
VARS-228ENST00000495010 CARD14Q9BXL6 1004 aa19.76■□□□□ 0.75
VARS-228ENST00000495010 PKD1L3Q7Z443 1732 aa19.76■□□□□ 0.75
VARS-228ENST00000495010 GNPATO15228 680 aa19.75■□□□□ 0.75
VARS-228ENST00000495010 ATP6V1AP38606 617 aa19.75■□□□□ 0.75
VARS-228ENST00000495010 IFFO2Q5TF58 517 aa19.75■□□□□ 0.75
VARS-228ENST00000495010 AMIGO3Q86WK7 504 aa19.75■□□□□ 0.75
VARS-228ENST00000495010 LINC00116Q8NCU8 138 aa19.75■□□□□ 0.75
VARS-228ENST00000495010 UBR3Q6ZT12 1888 aa19.74■□□□□ 0.75
VARS-228ENST00000495010 IFNL2Q8IZJ0 200 aa19.74■□□□□ 0.75
VARS-228ENST00000495010 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.74■□□□□ 0.75
VARS-228ENST00000495010 WASHC2AQ641Q2 1341 aa19.74■□□□□ 0.75
VARS-228ENST00000495010 GOLGB1Q14789 3259 aaKnown RBP19.73■□□□□ 0.75
VARS-228ENST00000495010 EYA1Q99502 592 aa19.73■□□□□ 0.75
VARS-228ENST00000495010 ASAP1Q9ULH1 1129 aa19.73■□□□□ 0.75
VARS-228ENST00000495010 ADCY9O60503 1353 aa19.72■□□□□ 0.75
VARS-228ENST00000495010 HSPA6P17066 643 aa19.72■□□□□ 0.75
VARS-228ENST00000495010 NCAPD2Q15021 1401 aa19.71■□□□□ 0.75
VARS-228ENST00000495010 PHKG2P15735 406 aa19.71■□□□□ 0.75
VARS-228ENST00000495010 ITPK1Q13572 414 aa19.7■□□□□ 0.74
VARS-228ENST00000495010 MMP10P09238 476 aa19.69■□□□□ 0.74
VARS-228ENST00000495010 TRAPPC3LQ5T215 181 aa19.69■□□□□ 0.74
VARS-228ENST00000495010 MAP2P11137 1827 aaKnown RBP19.68■□□□□ 0.74
VARS-228ENST00000495010 POLR3GLQ9BT43 218 aa19.68■□□□□ 0.74
VARS-228ENST00000495010 ATG3Q9NT62 314 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms