RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 SGIP1Q9BQI5 828 aa32.39■■■□□ 2.78
COL27A1-208ENST00000494780 CGNL1Q0VF96 1302 aa32.39■■■□□ 2.78
COL27A1-208ENST00000494780 KIF20BQ96Q89 1820 aa32.38■■■□□ 2.77
COL27A1-208ENST00000494780 SHANK3Q9BYB0 1731 aa32.38■■■□□ 2.77
COL27A1-208ENST00000494780 PRIM1P49642 420 aaKnown RBP32.38■■■□□ 2.77
COL27A1-208ENST00000494780 SYTL4Q96C24 671 aaPredicted RBP32.38■■■□□ 2.77
COL27A1-208ENST00000494780 KIF24Q5T7B8 1368 aa32.37■■■□□ 2.77
COL27A1-208ENST00000494780 DOT1LQ8TEK3 1739 aa32.37■■■□□ 2.77
COL27A1-208ENST00000494780 INSRP06213 1382 aa32.36■■■□□ 2.77
COL27A1-208ENST00000494780 AKT1S1Q96B36 256 aa32.36■■■□□ 2.77
COL27A1-208ENST00000494780 FLT4P35916 1363 aa32.34■■■□□ 2.77
COL27A1-208ENST00000494780 RAPGEF4Q8WZA2 1011 aa32.34■■■□□ 2.77
COL27A1-208ENST00000494780 FHDC1Q9C0D6 1143 aaPredicted RBP32.34■■■□□ 2.77
COL27A1-208ENST00000494780 NSD2O96028 1365 aa32.33■■■□□ 2.77
COL27A1-208ENST00000494780 CLSPNQ9HAW4 1339 aa32.33■■■□□ 2.77
COL27A1-208ENST00000494780 HSP90AB2PQ58FF8 381 aa32.33■■■□□ 2.77
COL27A1-208ENST00000494780 USHBP1Q8N6Y0 703 aa32.33■■■□□ 2.77
COL27A1-208ENST00000494780 SYT17Q9BSW7 474 aa32.33■■■□□ 2.77
COL27A1-208ENST00000494780 CARD14Q9BXL6 1004 aa32.33■■■□□ 2.77
COL27A1-208ENST00000494780 TATP17735 454 aaPredicted RBP32.31■■■□□ 2.76
COL27A1-208ENST00000494780 NSD3Q9BZ95 1437 aa32.31■■■□□ 2.76
COL27A1-208ENST00000494780 QSER1Q2KHR3 1735 aa32.3■■■□□ 2.76
COL27A1-208ENST00000494780 SLC16A10Q8TF71 515 aa32.3■■■□□ 2.76
COL27A1-208ENST00000494780 ARXQ96QS3 562 aa32.3■■■□□ 2.76
COL27A1-208ENST00000494780 LY75O60449 1722 aa32.29■■■□□ 2.76
COL27A1-208ENST00000494780 PNPLA7Q6ZV29 1317 aa32.26■■■□□ 2.75
COL27A1-208ENST00000494780 MAP3K5Q99683 1374 aa32.25■■■□□ 2.75
COL27A1-208ENST00000494780 KCNQ4P56696 695 aa32.25■■■□□ 2.75
COL27A1-208ENST00000494780 TFCP2L1Q9NZI6 479 aa32.25■■■□□ 2.75
COL27A1-208ENST00000494780 PCDH11XQ9BZA7 1347 aa32.25■■■□□ 2.75
COL27A1-208ENST00000494780 PCDH11YQ9BZA8 1340 aa32.25■■■□□ 2.75
COL27A1-208ENST00000494780 EMILIN1Q9Y6C2 1016 aa32.24■■■□□ 2.75
COL27A1-208ENST00000494780 CCNL1Q9UK58 526 aaPredicted RBP32.23■■■□□ 2.75
COL27A1-208ENST00000494780 PCGF6Q9BYE7 350 aa32.21■■■□□ 2.75
COL27A1-208ENST00000494780 POLD1P28340 1107 aa32.19■■■□□ 2.74
COL27A1-208ENST00000494780 TUBGCP6Q96RT7 1819 aa32.19■■■□□ 2.74
COL27A1-208ENST00000494780 COL24A1Q17RW2 1714 aa32.18■■■□□ 2.74
COL27A1-208ENST00000494780 NCAPD2Q15021 1401 aa32.17■■■□□ 2.74
COL27A1-208ENST00000494780 PPM1GO15355 546 aaPredicted RBP32.16■■■□□ 2.74
COL27A1-208ENST00000494780 ANKRD26Q9UPS8 1709 aa32.16■■■□□ 2.74
COL27A1-208ENST00000494780 CYP27B1O15528 508 aa32.15■■■□□ 2.74
COL27A1-208ENST00000494780 WASHC2AQ641Q2 1341 aa32.15■■■□□ 2.74
COL27A1-208ENST00000494780 HMGB2P26583 209 aaKnown RBP32.14■■■□□ 2.74
COL27A1-208ENST00000494780 PKD1L3Q7Z443 1732 aa32.13■■■□□ 2.73
COL27A1-208ENST00000494780 MPRIPQ6WCQ1 1025 aa32.11■■■□□ 2.73
COL27A1-208ENST00000494780 PALLDQ8WX93 1383 aa32.1■■■□□ 2.73
COL27A1-208ENST00000494780 MAP2P11137 1827 aaKnown RBP32.1■■■□□ 2.73
COL27A1-208ENST00000494780 POLR3GLQ9BT43 218 aa32.09■■■□□ 2.73
COL27A1-208ENST00000494780 POLKQ9UBT6 870 aa32.09■■■□□ 2.73
COL27A1-208ENST00000494780 SPG7Q9UQ90 795 aa32.09■■■□□ 2.73
COL27A1-208ENST00000494780 NKX1-1Q15270 411 aaPredicted RBP32.08■■■□□ 2.73
COL27A1-208ENST00000494780 COL23A1Q86Y22 540 aaPredicted RBP32.08■■■□□ 2.73
COL27A1-208ENST00000494780 EYA1Q99502 592 aa32.08■■■□□ 2.73
COL27A1-208ENST00000494780 C5P01031 1676 aa32.08■■■□□ 2.73
COL27A1-208ENST00000494780 TOGARAM1Q9Y4F4 1720 aa32.07■■■□□ 2.72
COL27A1-208ENST00000494780 KLHL34Q8N239 644 aa32.07■■■□□ 2.72
COL27A1-208ENST00000494780 SMARCC1Q92922 1105 aaPredicted RBP32.07■■■□□ 2.72
COL27A1-208ENST00000494780 MSH5O43196 834 aa32.06■■■□□ 2.72
COL27A1-208ENST00000494780 EIF4G2P78344 907 aaKnown RBP eCLIP32.06■■■□□ 2.72
COL27A1-208ENST00000494780 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.06■■■□□ 2.724e-13■■□□□ 12
COL27A1-208ENST00000494780 ITGB4P16144 1822 aa32.05■■■□□ 2.72
COL27A1-208ENST00000494780 GPR162Q16538 588 aa32.03■■■□□ 2.72
COL27A1-208ENST00000494780 FLAD1Q8NFF5 587 aa32.03■■■□□ 2.72
COL27A1-208ENST00000494780 CHD4Q14839 1912 aa32.02■■■□□ 2.72
COL27A1-208ENST00000494780 ZNF784Q8NCA9 323 aaPredicted RBP32.02■■■□□ 2.72
COL27A1-208ENST00000494780 PIGBQ92521 554 aa32.02■■■□□ 2.72
COL27A1-208ENST00000494780 TAF1LQ8IZX4 1826 aa32.01■■■□□ 2.72
COL27A1-208ENST00000494780 HSPA5P11021 654 aaKnown RBP32.01■■■□□ 2.71
COL27A1-208ENST00000494780 TNNT2P45379 298 aaPredicted RBP31.98■■■□□ 2.71
COL27A1-208ENST00000494780 EIF4A2Q14240 407 aaKnown RBP31.98■■■□□ 2.71
COL27A1-208ENST00000494780 PLEKHG2Q9H7P9 1386 aa31.97■■■□□ 2.71
COL27A1-208ENST00000494780 IFNL2Q8IZJ0 200 aa31.97■■■□□ 2.71
COL27A1-208ENST00000494780 NLGN2Q8NFZ4 835 aa31.97■■■□□ 2.71
COL27A1-208ENST00000494780 C4BP0C0L5 1744 aa31.96■■■□□ 2.71
COL27A1-208ENST00000494780 MSL1Q68DK7 614 aa31.96■■■□□ 2.71
COL27A1-208ENST00000494780 PANK3Q9H999 370 aa31.96■■■□□ 2.71
COL27A1-208ENST00000494780 UTRNP46939 3433 aa31.96■■■□□ 2.71
COL27A1-208ENST00000494780 PHKG2P15735 406 aa31.95■■■□□ 2.71
COL27A1-208ENST00000494780 TMOD3Q9NYL9 352 aa31.95■■■□□ 2.71
COL27A1-208ENST00000494780 AK7Q96M32 723 aa31.94■■■□□ 2.7
COL27A1-208ENST00000494780 PELP1Q8IZL8 1130 aaKnown RBP31.93■■■□□ 2.7
COL27A1-208ENST00000494780 CCER1Q8TC90 406 aaPredicted RBP31.92■■■□□ 2.7
COL27A1-208ENST00000494780 LOC102724428A0A0B4J2F2 783 aa31.91■■■□□ 2.7
COL27A1-208ENST00000494780 SIK1P57059 783 aa31.91■■■□□ 2.7
COL27A1-208ENST00000494780 IGSF1Q8N6C5 1336 aa31.91■■■□□ 2.7
COL27A1-208ENST00000494780 ASAP1Q9ULH1 1129 aa31.88■■■□□ 2.69
COL27A1-208ENST00000494780 CD2APQ9Y5K6 639 aa31.87■■■□□ 2.69
COL27A1-208ENST00000494780 UBR3Q6ZT12 1888 aa31.86■■■□□ 2.69
COL27A1-208ENST00000494780 AMIGO3Q86WK7 504 aa31.86■■■□□ 2.69
COL27A1-208ENST00000494780 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.85■■■□□ 2.69
COL27A1-208ENST00000494780 GRIN3BO60391 1043 aa31.85■■■□□ 2.69
COL27A1-208ENST00000494780 PHF14O94880 888 aa31.85■■■□□ 2.69
COL27A1-208ENST00000494780 SSFA2P28290 1259 aa31.85■■■□□ 2.69
COL27A1-208ENST00000494780 LINC00116Q8NCU8 138 aa31.85■■■□□ 2.69
COL27A1-208ENST00000494780 MORC1Q86VD1 984 aa31.84■■■□□ 2.69
COL27A1-208ENST00000494780 ATP6V1AP38606 617 aa31.83■■■□□ 2.69
COL27A1-208ENST00000494780 ATG3Q9NT62 314 aa31.83■■■□□ 2.69
COL27A1-208ENST00000494780 HSP90AB1P08238 724 aaKnown RBP31.82■■■□□ 2.68
COL27A1-208ENST00000494780 YBX3P16989 372 aaKnown RBP eCLIP31.82■■■□□ 2.68
COL27A1-208ENST00000494780 ITPK1Q13572 414 aa31.82■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms