RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 TRIM37O94972 964 aa18.23■□□□□ 0.51
COL1A1-208ENST00000494334 SULT6B1Q6IMI4 303 aa18.23■□□□□ 0.51
COL1A1-208ENST00000494334 BCL9O00512 1426 aa18.23■□□□□ 0.51
COL1A1-208ENST00000494334 EP400Q96L91 3159 aa18.22■□□□□ 0.51
COL1A1-208ENST00000494334 PRKRIP1Q9H875 184 aaPredicted RBP18.21■□□□□ 0.51
COL1A1-208ENST00000494334 KDRP35968 1356 aa18.2■□□□□ 0.5
COL1A1-208ENST00000494334 HMOX1P09601 288 aa18.2■□□□□ 0.5
COL1A1-208ENST00000494334 SF3B2Q13435 895 aaKnown RBP18.2■□□□□ 0.5
COL1A1-208ENST00000494334 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.2■□□□□ 0.5
COL1A1-208ENST00000494334 U2SURPO15042 1029 aaKnown RBP18.19■□□□□ 0.5
COL1A1-208ENST00000494334 CYP27B1O15528 508 aa18.19■□□□□ 0.5
COL1A1-208ENST00000494334 RGPD1P0DJD0 1748 aa18.19■□□□□ 0.5
COL1A1-208ENST00000494334 SPG7Q9UQ90 795 aa18.19■□□□□ 0.5
COL1A1-208ENST00000494334 PCDH11XQ9BZA7 1347 aa18.19■□□□□ 0.5
COL1A1-208ENST00000494334 PCDH11YQ9BZA8 1340 aa18.19■□□□□ 0.5
COL1A1-208ENST00000494334 DEFB132Q7Z7B7 95 aa18.18■□□□□ 0.5
COL1A1-208ENST00000494334 ACSBG1Q96GR2 724 aa18.18■□□□□ 0.5
COL1A1-208ENST00000494334 MYBBP1AQ9BQG0 1328 aaKnown RBP18.18■□□□□ 0.5
COL1A1-208ENST00000494334 PLEKHG2Q9H7P9 1386 aa18.17■□□□□ 0.5
COL1A1-208ENST00000494334 PTF1AQ7RTS3 328 aa18.17■□□□□ 0.5
COL1A1-208ENST00000494334 BCL11BQ9C0K0 894 aaPredicted RBP18.17■□□□□ 0.5
COL1A1-208ENST00000494334 NUDCQ9Y266 331 aa18.17■□□□□ 0.5
COL1A1-208ENST00000494334 KCNQ2O43526 872 aa18.16■□□□□ 0.5
COL1A1-208ENST00000494334 PLEKHO1Q53GL0 409 aaPredicted RBP18.16■□□□□ 0.5
COL1A1-208ENST00000494334 APBA3O96018 575 aa18.15■□□□□ 0.5
COL1A1-208ENST00000494334 BAG6P46379 1132 aa18.15■□□□□ 0.5
COL1A1-208ENST00000494334 AMOTQ4VCS5 1084 aa18.15■□□□□ 0.5
COL1A1-208ENST00000494334 SHANK3Q9BYB0 1731 aa18.15■□□□□ 0.5
COL1A1-208ENST00000494334 PHKG2P15735 406 aa18.14■□□□□ 0.49
COL1A1-208ENST00000494334 EN1Q05925 392 aaPredicted RBP18.14■□□□□ 0.49
COL1A1-208ENST00000494334 NKX1-1Q15270 411 aaPredicted RBP18.14■□□□□ 0.49
COL1A1-208ENST00000494334 IFNL2Q8IZJ0 200 aa18.14■□□□□ 0.49
COL1A1-208ENST00000494334 PKD1L3Q7Z443 1732 aa18.13■□□□□ 0.49
COL1A1-208ENST00000494334 U2AF1L5P0DN76 240 aaPredicted RBP18.13■□□□□ 0.49
COL1A1-208ENST00000494334 U2AF1Q01081 240 aaKnown RBP eCLIP18.13■□□□□ 0.49
COL1A1-208ENST00000494334 PRIM1P49642 420 aaKnown RBP18.12■□□□□ 0.49
COL1A1-208ENST00000494334 ZNF530Q6P9A1 599 aaPredicted RBP18.11■□□□□ 0.49
COL1A1-208ENST00000494334 CAMKK2Q96RR4 588 aa18.11■□□□□ 0.49
COL1A1-208ENST00000494334 RSPH6AQ9H0K4 717 aa18.11■□□□□ 0.49
COL1A1-208ENST00000494334 SBF2Q86WG5 1849 aa18.1■□□□□ 0.49
COL1A1-208ENST00000494334 FCHSD2O94868 740 aa18.1■□□□□ 0.49
COL1A1-208ENST00000494334 EZH2Q15910 746 aaKnown RBP18.1■□□□□ 0.49
COL1A1-208ENST00000494334 SYTL4Q96C24 671 aaPredicted RBP18.1■□□□□ 0.49
COL1A1-208ENST00000494334 TNS1Q9HBL0 1735 aaKnown RBP18.09■□□□□ 0.49
COL1A1-208ENST00000494334 PLSCR1O15162 318 aa18.09■□□□□ 0.49
COL1A1-208ENST00000494334 ANP32CO43423 234 aa18.09■□□□□ 0.49
COL1A1-208ENST00000494334 PRKAR2BP31323 418 aa18.09■□□□□ 0.49
COL1A1-208ENST00000494334 MTHFSDQ2M296 383 aaKnown RBP18.09■□□□□ 0.49
COL1A1-208ENST00000494334 HSP90AB1P08238 724 aaKnown RBP18.07■□□□□ 0.48
COL1A1-208ENST00000494334 AKAP4Q5JQC9 854 aa18.07■□□□□ 0.48
COL1A1-208ENST00000494334 C1orf141Q5JVX7 400 aa18.07■□□□□ 0.48
COL1A1-208ENST00000494334 PHACTR3Q96KR7 559 aa18.07■□□□□ 0.48
COL1A1-208ENST00000494334 NHSQ6T4R5 1651 aa18.06■□□□□ 0.48
COL1A1-208ENST00000494334 DCAF5Q96JK2 942 aa18.06■□□□□ 0.48
COL1A1-208ENST00000494334 MPRIPQ6WCQ1 1025 aa18.05■□□□□ 0.48
COL1A1-208ENST00000494334 PROM2Q8N271 834 aa18.05■□□□□ 0.48
COL1A1-208ENST00000494334 GAS2L2Q8NHY3 880 aa18.04■□□□□ 0.48
COL1A1-208ENST00000494334 DOT1LQ8TEK3 1739 aa18.03■□□□□ 0.48
COL1A1-208ENST00000494334 ERVV-2B6SEH9 535 aa18.03■□□□□ 0.48
COL1A1-208ENST00000494334 CCDC184Q52MB2 194 aa18.03■□□□□ 0.48
COL1A1-208ENST00000494334 PIGBQ92521 554 aa18.03■□□□□ 0.48
COL1A1-208ENST00000494334 PLEKHF1Q96S99 279 aa18.03■□□□□ 0.48
COL1A1-208ENST00000494334 KDM6AO15550 1401 aaPredicted RBP18.03■□□□□ 0.48
COL1A1-208ENST00000494334 KAT6BQ8WYB5 2073 aa18.03■□□□□ 0.48
COL1A1-208ENST00000494334 TXNRD1Q16881 649 aa18.02■□□□□ 0.48
COL1A1-208ENST00000494334 LGR6Q9HBX8 967 aa18.02■□□□□ 0.48
COL1A1-208ENST00000494334 TMOD3Q9NYL9 352 aa18.01■□□□□ 0.47
COL1A1-208ENST00000494334 TOGARAM1Q9Y4F4 1720 aa18.01■□□□□ 0.47
COL1A1-208ENST00000494334 RNMTO43148 476 aaKnown RBP18■□□□□ 0.47
COL1A1-208ENST00000494334 CABP4P57796 275 aa18■□□□□ 0.47
COL1A1-208ENST00000494334 WDR43Q15061 677 aaKnown RBP eCLIP18■□□□□ 0.47
COL1A1-208ENST00000494334 PNNQ9H307 717 aaKnown RBP18■□□□□ 0.47
COL1A1-208ENST00000494334 GNAT3A8MTJ3 354 aa17.99■□□□□ 0.47
COL1A1-208ENST00000494334 ADAMTS8Q9UP79 889 aa17.99■□□□□ 0.47
COL1A1-208ENST00000494334 BTAF1O14981 1849 aa17.99■□□□□ 0.47
COL1A1-208ENST00000494334 NEFMP07197 916 aa17.98■□□□□ 0.47
COL1A1-208ENST00000494334 NFATC2IPQ8NCF5 419 aa17.98■□□□□ 0.47
COL1A1-208ENST00000494334 MAP3K5Q99683 1374 aa17.98■□□□□ 0.47
COL1A1-208ENST00000494334 IL17REQ8NFR9 667 aa17.97■□□□□ 0.47
COL1A1-208ENST00000494334 SMARCC1Q92922 1105 aaPredicted RBP17.96■□□□□ 0.47
COL1A1-208ENST00000494334 SLC52A2Q9HAB3 445 aa17.96■□□□□ 0.47
COL1A1-208ENST00000494334 ATG3Q9NT62 314 aa17.96■□□□□ 0.47
COL1A1-208ENST00000494334 LRRC4BQ9NT99 713 aa17.96■□□□□ 0.47
COL1A1-208ENST00000494334 ASAP1Q9ULH1 1129 aa17.96■□□□□ 0.47
COL1A1-208ENST00000494334 RGPD3A6NKT7 1758 aaPredicted RBP17.96■□□□□ 0.47
COL1A1-208ENST00000494334 RGPD4Q7Z3J3 1758 aa17.96■□□□□ 0.47
COL1A1-208ENST00000494334 MAPK8IP3Q9UPT6 1336 aa17.96■□□□□ 0.46
COL1A1-208ENST00000494334 PALLDQ8WX93 1383 aa17.95■□□□□ 0.46
COL1A1-208ENST00000494334 SLC27A3Q5K4L6 730 aa17.95■□□□□ 0.46
COL1A1-208ENST00000494334 MRS2Q9HD23 443 aa17.95■□□□□ 0.46
COL1A1-208ENST00000494334 ITGB4P16144 1822 aa17.95■□□□□ 0.46
COL1A1-208ENST00000494334 RREB1Q92766 1687 aa17.94■□□□□ 0.46
COL1A1-208ENST00000494334 KCNQ4P56696 695 aa17.94■□□□□ 0.46
COL1A1-208ENST00000494334 NBPF14Q5TI25 921 aa17.94■□□□□ 0.46
COL1A1-208ENST00000494334 CCDC146Q8IYE0 955 aa17.94■□□□□ 0.46
COL1A1-208ENST00000494334 HTATSF1O43719 755 aaKnown RBP17.93■□□□□ 0.46
COL1A1-208ENST00000494334 NFE2L2Q16236 605 aa17.93■□□□□ 0.46
COL1A1-208ENST00000494334 PNISRQ8TF01 805 aaKnown RBP17.93■□□□□ 0.46
COL1A1-208ENST00000494334 RTF1Q92541 710 aaKnown RBP17.93■□□□□ 0.46
COL1A1-208ENST00000494334 CCNL1Q9UK58 526 aaPredicted RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms