RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 CEP350Q5VT06 3117 aa25.02■■□□□ 1.6
NUP50-218ENST00000493456 PRIM1P49642 420 aaKnown RBP25■■□□□ 1.59
NUP50-218ENST00000493456 NSD2O96028 1365 aa25■■□□□ 1.59
NUP50-218ENST00000493456 COG3Q96JB2 828 aa24.99■■□□□ 1.59
NUP50-218ENST00000493456 SHANK3Q9BYB0 1731 aa24.98■■□□□ 1.59
NUP50-218ENST00000493456 MAP3K19Q56UN5 1328 aa24.98■■□□□ 1.59
NUP50-218ENST00000493456 GIGYF1O75420 1035 aaPredicted RBP24.98■■□□□ 1.59
NUP50-218ENST00000493456 HOXC9P31274 260 aa24.98■■□□□ 1.59
NUP50-218ENST00000493456 PELP1Q8IZL8 1130 aaKnown RBP24.97■■□□□ 1.59
NUP50-218ENST00000493456 ZCRB1Q8TBF4 217 aaKnown RBP24.97■■□□□ 1.59
NUP50-218ENST00000493456 RTL1A6NKG5 1358 aa24.96■■□□□ 1.59
NUP50-218ENST00000493456 AMPHP49418 695 aa24.96■■□□□ 1.59
NUP50-218ENST00000493456 KCNQ4P56696 695 aa24.96■■□□□ 1.59
NUP50-218ENST00000493456 MEGF6O75095 1541 aa24.96■■□□□ 1.59
NUP50-218ENST00000493456 NLGN2Q8NFZ4 835 aa24.95■■□□□ 1.58
NUP50-218ENST00000493456 CCNL1Q9UK58 526 aaPredicted RBP24.95■■□□□ 1.58
NUP50-218ENST00000493456 USP47Q96K76 1375 aa24.93■■□□□ 1.58
NUP50-218ENST00000493456 CGNL1Q0VF96 1302 aa24.93■■□□□ 1.58
NUP50-218ENST00000493456 GRIN3BO60391 1043 aa24.92■■□□□ 1.58
NUP50-218ENST00000493456 SLC24A1O60721 1099 aa24.92■■□□□ 1.58
NUP50-218ENST00000493456 TONSLQ96HA7 1378 aa24.92■■□□□ 1.58
NUP50-218ENST00000493456 RGPD2P0DJD1 1756 aa24.91■■□□□ 1.58
NUP50-218ENST00000493456 HMGB2P26583 209 aaKnown RBP24.91■■□□□ 1.58
NUP50-218ENST00000493456 TESK2Q96S53 571 aa24.9■■□□□ 1.58
NUP50-218ENST00000493456 SMG6Q86US8 1419 aaKnown RBP24.89■■□□□ 1.58
NUP50-218ENST00000493456 MSH5O43196 834 aa24.89■■□□□ 1.58
NUP50-218ENST00000493456 COL23A1Q86Y22 540 aaPredicted RBP24.88■■□□□ 1.57
NUP50-218ENST00000493456 C5P01031 1676 aa24.86■■□□□ 1.57
NUP50-218ENST00000493456 YBX3P16989 372 aaKnown RBP eCLIP24.86■■□□□ 1.57
NUP50-218ENST00000493456 FBLN1P23142 703 aa24.86■■□□□ 1.57
NUP50-218ENST00000493456 NBPF6Q5VWK0 638 aa24.86■■□□□ 1.57
NUP50-218ENST00000493456 RAPGEF4Q8WZA2 1011 aa24.86■■□□□ 1.57
NUP50-218ENST00000493456 NBPF4Q96M43 638 aa24.86■■□□□ 1.57
NUP50-218ENST00000493456 ST20-MTHFSA0A0A6YYL1 179 aa24.84■■□□□ 1.57
NUP50-218ENST00000493456 PCDH11XQ9BZA7 1347 aa24.84■■□□□ 1.57
NUP50-218ENST00000493456 PCDH11YQ9BZA8 1340 aa24.84■■□□□ 1.57
NUP50-218ENST00000493456 RRS1Q15050 365 aaKnown RBP24.83■■□□□ 1.57
NUP50-218ENST00000493456 FLAD1Q8NFF5 587 aa24.83■■□□□ 1.57
NUP50-218ENST00000493456 TATP17735 454 aaPredicted RBP24.82■■□□□ 1.56
NUP50-218ENST00000493456 CD2APQ9Y5K6 639 aa24.82■■□□□ 1.56
NUP50-218ENST00000493456 MSL1Q68DK7 614 aa24.81■■□□□ 1.56
NUP50-218ENST00000493456 USHBP1Q8N6Y0 703 aa24.81■■□□□ 1.56
NUP50-218ENST00000493456 PALLDQ8WX93 1383 aa24.8■■□□□ 1.56
NUP50-218ENST00000493456 INSRP06213 1382 aa24.8■■□□□ 1.56
NUP50-218ENST00000493456 KIF24Q5T7B8 1368 aa24.8■■□□□ 1.56
NUP50-218ENST00000493456 FYB1O15117 783 aa24.79■■□□□ 1.56
NUP50-218ENST00000493456 TAF1LQ8IZX4 1826 aa24.79■■□□□ 1.56
NUP50-218ENST00000493456 ATP10DQ9P241 1426 aa24.78■■□□□ 1.56
NUP50-218ENST00000493456 FLT4P35916 1363 aa24.78■■□□□ 1.56
NUP50-218ENST00000493456 GGNBP2Q9H3C7 697 aa24.77■■□□□ 1.56
NUP50-218ENST00000493456 C4BP0C0L5 1744 aa24.76■■□□□ 1.55
NUP50-218ENST00000493456 NSD3Q9BZ95 1437 aa24.76■■□□□ 1.55
NUP50-218ENST00000493456 SMARCC1Q92922 1105 aaPredicted RBP24.75■■□□□ 1.55
NUP50-218ENST00000493456 HSP90AB2PQ58FF8 381 aa24.74■■□□□ 1.55
NUP50-218ENST00000493456 MPRIPQ6WCQ1 1025 aa24.74■■□□□ 1.55
NUP50-218ENST00000493456 KIF20BQ96Q89 1820 aa24.74■■□□□ 1.55
NUP50-218ENST00000493456 TOGARAM1Q9Y4F4 1720 aa24.73■■□□□ 1.55
NUP50-218ENST00000493456 ADCY9O60503 1353 aa24.73■■□□□ 1.55
NUP50-218ENST00000493456 TMF1P82094 1093 aa24.73■■□□□ 1.55
NUP50-218ENST00000493456 AK7Q96M32 723 aa24.73■■□□□ 1.55
NUP50-218ENST00000493456 PKD1L3Q7Z443 1732 aa24.72■■□□□ 1.55
NUP50-218ENST00000493456 IFFO2Q5TF58 517 aa24.72■■□□□ 1.55
NUP50-218ENST00000493456 GPBP1L1Q9HC44 474 aaPredicted RBP24.72■■□□□ 1.55
NUP50-218ENST00000493456 CYP27B1O15528 508 aa24.71■■□□□ 1.55
NUP50-218ENST00000493456 ITGB4P16144 1822 aa24.7■■□□□ 1.54
NUP50-218ENST00000493456 UBR3Q6ZT12 1888 aa24.68■■□□□ 1.54
NUP50-218ENST00000493456 CDCA8Q53HL2 280 aa24.68■■□□□ 1.54
NUP50-218ENST00000493456 NCAPD2Q15021 1401 aa24.68■■□□□ 1.54
NUP50-218ENST00000493456 IGSF1Q8N6C5 1336 aa24.66■■□□□ 1.54
NUP50-218ENST00000493456 SSFA2P28290 1259 aa24.66■■□□□ 1.54
NUP50-218ENST00000493456 NKX1-1Q15270 411 aaPredicted RBP24.66■■□□□ 1.54
NUP50-218ENST00000493456 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.65■■□□□ 1.54
NUP50-218ENST00000493456 AMIGO3Q86WK7 504 aa24.65■■□□□ 1.54
NUP50-218ENST00000493456 PIGBQ92521 554 aa24.65■■□□□ 1.54
NUP50-218ENST00000493456 PHF14O94880 888 aa24.64■■□□□ 1.54
NUP50-218ENST00000493456 SPG7Q9UQ90 795 aa24.64■■□□□ 1.54
NUP50-218ENST00000493456 MAP2P11137 1827 aaKnown RBP24.63■■□□□ 1.53
NUP50-218ENST00000493456 ANKRD26Q9UPS8 1709 aa24.63■■□□□ 1.53
NUP50-218ENST00000493456 LOC102724428A0A0B4J2F2 783 aa24.62■■□□□ 1.53
NUP50-218ENST00000493456 HSPA6P17066 643 aa24.62■■□□□ 1.53
NUP50-218ENST00000493456 SIK1P57059 783 aa24.62■■□□□ 1.53
NUP50-218ENST00000493456 EMILIN1Q9Y6C2 1016 aa24.62■■□□□ 1.53
NUP50-218ENST00000493456 LINC00116Q8NCU8 138 aa24.6■■□□□ 1.53
NUP50-218ENST00000493456 ZNF526Q8TF50 670 aaPredicted RBP24.6■■□□□ 1.53
NUP50-218ENST00000493456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.6■■□□□ 1.535e-6■□□□□ 10.1
NUP50-218ENST00000493456 TMOD3Q9NYL9 352 aa24.59■■□□□ 1.53
NUP50-218ENST00000493456 CICQ96RK0 1608 aaPredicted RBP24.59■■□□□ 1.53
NUP50-218ENST00000493456 WASHC2AQ641Q2 1341 aa24.57■■□□□ 1.52
NUP50-218ENST00000493456 GNPATO15228 680 aa24.56■■□□□ 1.52
NUP50-218ENST00000493456 PPM1GO15355 546 aaPredicted RBP24.56■■□□□ 1.52
NUP50-218ENST00000493456 SMIM5Q71RC9 77 aa24.56■■□□□ 1.52
NUP50-218ENST00000493456 CARD14Q9BXL6 1004 aa24.56■■□□□ 1.52
NUP50-218ENST00000493456 PLEKHG2Q9H7P9 1386 aa24.55■■□□□ 1.52
NUP50-218ENST00000493456 ATP6V1AP38606 617 aa24.54■■□□□ 1.52
NUP50-218ENST00000493456 IFNL2Q8IZJ0 200 aa24.54■■□□□ 1.52
NUP50-218ENST00000493456 WWC3Q9ULE0 1092 aa24.54■■□□□ 1.52
NUP50-218ENST00000493456 ASAP1Q9ULH1 1129 aa24.54■■□□□ 1.52
NUP50-218ENST00000493456 ITPK1Q13572 414 aa24.53■■□□□ 1.52
NUP50-218ENST00000493456 EYA1Q99502 592 aa24.53■■□□□ 1.52
NUP50-218ENST00000493456 KIF13BQ9NQT8 1826 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms