RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CENPJQ9HC77 1338 aaPredicted RBP9.55□□□□□ -0.88
VPS52-219ENST00000493379 FOXO3O43524 673 aa9.54□□□□□ -0.88
VPS52-219ENST00000493379 FAM196AQ6ZSG2 479 aa9.54□□□□□ -0.88
VPS52-219ENST00000493379 JMYQ8N9B5 988 aa9.54□□□□□ -0.88
VPS52-219ENST00000493379 KLRG1Q96E93 195 aa9.54□□□□□ -0.88
VPS52-219ENST00000493379 CARD11Q9BXL7 1154 aa9.54□□□□□ -0.88
VPS52-219ENST00000493379 BMP2KQ9NSY1 1161 aaPredicted RBP9.54□□□□□ -0.88
VPS52-219ENST00000493379 ANKARQ7Z5J8 1434 aa9.54□□□□□ -0.88
VPS52-219ENST00000493379 CAMK2BQ13554 666 aa9.53□□□□□ -0.88
VPS52-219ENST00000493379 TESK2Q96S53 571 aa9.53□□□□□ -0.88
VPS52-219ENST00000493379 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS52-219ENST00000493379 NPHP3Q7Z494 1330 aa9.53□□□□□ -0.88
VPS52-219ENST00000493379 PLEKHG3A1L390 1219 aa9.52□□□□□ -0.89
VPS52-219ENST00000493379 KIF3CO14782 793 aa9.52□□□□□ -0.89
VPS52-219ENST00000493379 ARXQ96QS3 562 aa9.52□□□□□ -0.89
VPS52-219ENST00000493379 EIF3AQ14152 1382 aaKnown RBP9.51□□□□□ -0.89
VPS52-219ENST00000493379 ARHGEF28Q8N1W1 1705 aaKnown RBP9.51□□□□□ -0.89
VPS52-219ENST00000493379 YBX3P16989 372 aaKnown RBP eCLIP9.51□□□□□ -0.89
VPS52-219ENST00000493379 ESCO1Q5FWF5 840 aa9.51□□□□□ -0.89
VPS52-219ENST00000493379 ZC3H15Q8WU90 426 aaKnown RBP9.51□□□□□ -0.89
VPS52-219ENST00000493379 CDK19Q9BWU1 502 aa9.51□□□□□ -0.89
VPS52-219ENST00000493379 MINK1Q8N4C8 1332 aaPredicted RBP9.51□□□□□ -0.89
VPS52-219ENST00000493379 PRR36Q9H6K5 1346 aa9.51□□□□□ -0.89
VPS52-219ENST00000493379 ABCA3Q99758 1704 aa9.51□□□□□ -0.89
VPS52-219ENST00000493379 GALR2O43603 387 aaPredicted RBP9.5□□□□□ -0.89
VPS52-219ENST00000493379 SAFB2Q14151 953 aaKnown RBP eCLIP9.5□□□□□ -0.89
VPS52-219ENST00000493379 TRIM35Q9UPQ4 493 aa9.5□□□□□ -0.89
VPS52-219ENST00000493379 ST20-MTHFSA0A0A6YYL1 179 aa9.49□□□□□ -0.89
VPS52-219ENST00000493379 NLGN2Q8NFZ4 835 aa9.49□□□□□ -0.89
VPS52-219ENST00000493379 NUDT16Q96DE0 195 aaKnown RBP9.49□□□□□ -0.89
VPS52-219ENST00000493379 HIRIP3Q9BW71 556 aaPredicted RBP9.49□□□□□ -0.89
VPS52-219ENST00000493379 GPHNQ9NQX3 736 aaPredicted RBP9.49□□□□□ -0.89
VPS52-219ENST00000493379 BTG4Q9NY30 223 aa9.49□□□□□ -0.89
VPS52-219ENST00000493379 TULP4Q9NRJ4 1543 aa9.49□□□□□ -0.89
VPS52-219ENST00000493379 SPATA31A5Q5VU36 1347 aa9.49□□□□□ -0.89
VPS52-219ENST00000493379 EVC2Q86UK5 1308 aa9.49□□□□□ -0.89
VPS52-219ENST00000493379 SPATA31A7Q8IWB4 1347 aa9.49□□□□□ -0.89
VPS52-219ENST00000493379 MAP3K5Q99683 1374 aa9.49□□□□□ -0.89
VPS52-219ENST00000493379 HSPA1AP0DMV8 641 aaKnown RBP9.48□□□□□ -0.89
VPS52-219ENST00000493379 HSPA1BP0DMV9 641 aaKnown RBP9.48□□□□□ -0.89
VPS52-219ENST00000493379 SPATA31A3Q5VYP0 1347 aa9.48□□□□□ -0.89
VPS52-219ENST00000493379 POLR3AO14802 1390 aaPredicted RBP9.48□□□□□ -0.89
VPS52-219ENST00000493379 ADCY9O60503 1353 aa9.48□□□□□ -0.89
VPS52-219ENST00000493379 FMN2Q9NZ56 1722 aa9.48□□□□□ -0.89
VPS52-219ENST00000493379 MTFR1LQ9H019 292 aa9.47□□□□□ -0.89
VPS52-219ENST00000493379 AATKQ6ZMQ8 1374 aa9.47□□□□□ -0.89
VPS52-219ENST00000493379 ATP7BP35670 1465 aa9.47□□□□□ -0.89
VPS52-219ENST00000493379 TMEM132AQ24JP5 1023 aa9.46□□□□□ -0.9
VPS52-219ENST00000493379 PPP1R15BQ5SWA1 713 aa9.46□□□□□ -0.9
VPS52-219ENST00000493379 SMYD5Q6GMV2 418 aa9.46□□□□□ -0.9
VPS52-219ENST00000493379 DPY19L2Q6NUT2 758 aa9.46□□□□□ -0.9
VPS52-219ENST00000493379 SBNO1A3KN83 1393 aa9.46□□□□□ -0.9
VPS52-219ENST00000493379 BRD4O60885 1362 aaPredicted RBP9.46□□□□□ -0.9
VPS52-219ENST00000493379 USP47Q96K76 1375 aa9.46□□□□□ -0.9
VPS52-219ENST00000493379 NUTM2FA1L443 756 aa9.45□□□□□ -0.9
VPS52-219ENST00000493379 PTF1AQ7RTS3 328 aa9.45□□□□□ -0.9
VPS52-219ENST00000493379 KRT28Q7Z3Y7 464 aa9.45□□□□□ -0.9
VPS52-219ENST00000493379 CLCN6P51797 869 aa9.44□□□□□ -0.9
VPS52-219ENST00000493379 EIF4G2P78344 907 aaKnown RBP eCLIP9.44□□□□□ -0.9
VPS52-219ENST00000493379 PSME1Q06323 249 aa9.44□□□□□ -0.9
VPS52-219ENST00000493379 CPSF1Q10570 1443 aaKnown RBP9.43□□□□□ -0.9
VPS52-219ENST00000493379 SSH2Q76I76 1423 aa9.43□□□□□ -0.9
VPS52-219ENST00000493379 ACEP12821 1306 aa9.43□□□□□ -0.9
VPS52-219ENST00000493379 SRPK2P78362 688 aaKnown RBP9.43□□□□□ -0.9
VPS52-219ENST00000493379 CABP1Q9NZU7 370 aa9.43□□□□□ -0.9
VPS52-219ENST00000493379 RGPD3A6NKT7 1758 aaPredicted RBP9.42□□□□□ -0.9
VPS52-219ENST00000493379 RGPD4Q7Z3J3 1758 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 HAX1O00165 279 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 TMF1P82094 1093 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 EVX2Q03828 476 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 CDCA8Q53HL2 280 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 MICALL2Q8IY33 904 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 PDCD7Q8N8D1 485 aaKnown RBP9.42□□□□□ -0.9
VPS52-219ENST00000493379 PMFBP1Q8TBY8 1022 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 KIF1AQ12756 1690 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 QRICH2Q9H0J4 1663 aa9.42□□□□□ -0.9
VPS52-219ENST00000493379 GRIN3BO60391 1043 aa9.41□□□□□ -0.9
VPS52-219ENST00000493379 HSPA5P11021 654 aaKnown RBP9.41□□□□□ -0.9
VPS52-219ENST00000493379 ATN1P54259 1190 aaPredicted RBP9.41□□□□□ -0.9
VPS52-219ENST00000493379 SLC15A2Q16348 729 aa9.41□□□□□ -0.9
VPS52-219ENST00000493379 STK32BQ9NY57 414 aa9.41□□□□□ -0.9
VPS52-219ENST00000493379 GTF3C3Q9Y5Q9 886 aa9.41□□□□□ -0.9
VPS52-219ENST00000493379 PPIP5K1Q6PFW1 1433 aa9.4□□□□□ -0.9
VPS52-219ENST00000493379 SPATA31A1Q5TZJ5 1347 aa9.4□□□□□ -0.9
VPS52-219ENST00000493379 ZMYND10O75800 440 aa9.4□□□□□ -0.9
VPS52-219ENST00000493379 BRPF1P55201 1214 aaPredicted RBP9.4□□□□□ -0.9
VPS52-219ENST00000493379 PDE3BQ13370 1112 aa9.4□□□□□ -0.9
VPS52-219ENST00000493379 DSG2Q14126 1118 aa9.4□□□□□ -0.9
VPS52-219ENST00000493379 NGDNQ8NEJ9 315 aaKnown RBP9.4□□□□□ -0.9
VPS52-219ENST00000493379 SLC12A5Q9H2X9 1139 aa9.4□□□□□ -0.9
VPS52-219ENST00000493379 SLC24A3Q9HC58 644 aa9.4□□□□□ -0.9
VPS52-219ENST00000493379 EMILIN3Q9NT22 766 aa9.4□□□□□ -0.9
VPS52-219ENST00000493379 COL14A1Q05707 1796 aaKnown RBP9.4□□□□□ -0.91
VPS52-219ENST00000493379 TNS3Q68CZ2 1445 aa9.39□□□□□ -0.91
VPS52-219ENST00000493379 ARHGEF10O15013 1369 aa9.39□□□□□ -0.91
VPS52-219ENST00000493379 TOPAZ1Q8N9V7 1692 aa9.39□□□□□ -0.91
VPS52-219ENST00000493379 TOMM70O94826 608 aa9.39□□□□□ -0.91
VPS52-219ENST00000493379 IRX5P78411 483 aaPredicted RBP9.39□□□□□ -0.91
VPS52-219ENST00000493379 MLLT1Q03111 559 aaPredicted RBP9.39□□□□□ -0.91
VPS52-219ENST00000493379 USP35Q9P2H5 1018 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms