RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-215ENST00000492606 PLEKHH2Q8IVE3 1493 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 MBD5Q9P267 1494 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 ARHGAP31Q2M1Z3 1444 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 RIMS2Q9UQ26 1411 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 MTUS2Q5JR59 1369 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 ZNF644Q9H582 1327 aaPredicted RBP6.84□□□□□ -1.31
UBR4-215ENST00000492606 C2orf72A6NCS6 295 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 POLD1P28340 1107 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 SOX10P56693 466 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 PDE3BQ13370 1112 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 TXNRD1Q16881 649 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 GTF3C3Q9Y5Q9 886 aa6.84□□□□□ -1.31
UBR4-215ENST00000492606 VIRMAQ69YN4 1812 aaKnown RBP6.83□□□□□ -1.32
UBR4-215ENST00000492606 SPATA31A1Q5TZJ5 1347 aa6.83□□□□□ -1.32
UBR4-215ENST00000492606 TULP1O00294 542 aaPredicted RBP6.83□□□□□ -1.32
UBR4-215ENST00000492606 GABBR2O75899 941 aa6.83□□□□□ -1.32
UBR4-215ENST00000492606 MCOLN1Q9GZU1 580 aa6.83□□□□□ -1.32
UBR4-215ENST00000492606 TIMELESSQ9UNS1 1208 aa6.83□□□□□ -1.32
UBR4-215ENST00000492606 COLQQ9Y215 455 aaPredicted RBP6.83□□□□□ -1.32
UBR4-215ENST00000492606 BOLA1Q9Y3E2 137 aa6.83□□□□□ -1.32
UBR4-215ENST00000492606 TOPAZ1Q8N9V7 1692 aa6.83□□□□□ -1.32
UBR4-215ENST00000492606 PEAK1Q9H792 1746 aa6.82□□□□□ -1.32
UBR4-215ENST00000492606 FYCO1Q9BQS8 1478 aa6.82□□□□□ -1.32
UBR4-215ENST00000492606 GPR37O15354 613 aa6.82□□□□□ -1.32
UBR4-215ENST00000492606 SMYD5Q6GMV2 418 aa6.82□□□□□ -1.32
UBR4-215ENST00000492606 PLPP6Q8IY26 295 aa6.82□□□□□ -1.32
UBR4-215ENST00000492606 PMFBP1Q8TBY8 1022 aa6.82□□□□□ -1.32
UBR4-215ENST00000492606 SNX27Q96L92 541 aa6.82□□□□□ -1.32
UBR4-215ENST00000492606 PHRF1Q9P1Y6 1649 aaKnown RBP6.82□□□□□ -1.32
UBR4-215ENST00000492606 DUOX2Q9NRD8 1548 aa6.81□□□□□ -1.32
UBR4-215ENST00000492606 PXDNLA1KZ92 1463 aa6.81□□□□□ -1.32
UBR4-215ENST00000492606 ZNF827Q17R98 1081 aa6.81□□□□□ -1.32
UBR4-215ENST00000492606 RRAGCQ9HB90 399 aa6.81□□□□□ -1.32
UBR4-215ENST00000492606 TECPR2O15040 1411 aa6.81□□□□□ -1.32
UBR4-215ENST00000492606 C10orf71Q711Q0 1435 aa6.81□□□□□ -1.32
UBR4-215ENST00000492606 SPDYE16A6NNV3 312 aaPredicted RBP6.8□□□□□ -1.32
UBR4-215ENST00000492606 ESCO1Q5FWF5 840 aa6.8□□□□□ -1.32
UBR4-215ENST00000492606 TMC2Q8TDI7 906 aa6.8□□□□□ -1.32
UBR4-215ENST00000492606 KCPQ6ZWJ8 1503 aa6.8□□□□□ -1.32
UBR4-215ENST00000492606 PAPPAQ13219 1627 aa6.79□□□□□ -1.32
UBR4-215ENST00000492606 RRBP1Q9P2E9 1410 aaKnown RBP6.79□□□□□ -1.32
UBR4-215ENST00000492606 VEGFBP49765 207 aa6.79□□□□□ -1.32
UBR4-215ENST00000492606 COL25A1Q9BXS0 654 aaPredicted RBP6.79□□□□□ -1.32
UBR4-215ENST00000492606 CFDP1Q9UEE9 299 aaPredicted RBP6.79□□□□□ -1.32
UBR4-215ENST00000492606 COL14A1Q05707 1796 aaKnown RBP6.79□□□□□ -1.32
UBR4-215ENST00000492606 CNTNAP1P78357 1384 aa6.79□□□□□ -1.32
UBR4-215ENST00000492606 TRIOBPQ9H2D6 2365 aa6.79□□□□□ -1.32
UBR4-215ENST00000492606 POTEIP0CG38 1075 aa6.78□□□□□ -1.32
UBR4-215ENST00000492606 SLC16A10Q8TF71 515 aa6.78□□□□□ -1.32
UBR4-215ENST00000492606 RAPGEFL1Q9UHV5 662 aa6.78□□□□□ -1.32
UBR4-215ENST00000492606 UNC80Q8N2C7 3258 aa6.78□□□□□ -1.32
UBR4-215ENST00000492606 OXER1Q8TDS5 423 aa6.77□□□□□ -1.33
UBR4-215ENST00000492606 CASP8AP2Q9UKL3 1982 aa6.77□□□□□ -1.33
UBR4-215ENST00000492606 PRIM1P49642 420 aaKnown RBP6.76□□□□□ -1.33
UBR4-215ENST00000492606 GPIHBP1Q8IV16 184 aa6.76□□□□□ -1.33
UBR4-215ENST00000492606 USP35Q9P2H5 1018 aa6.76□□□□□ -1.33
UBR4-215ENST00000492606 ARHGEF5Q12774 1597 aa6.76□□□□□ -1.33
UBR4-215ENST00000492606 GCC2Q8IWJ2 1684 aa6.76□□□□□ -1.33
UBR4-215ENST00000492606 SPTBN5Q9NRC6 3674 aaKnown RBP6.76□□□□□ -1.33
UBR4-215ENST00000492606 METP08581 1390 aa6.75□□□□□ -1.33
UBR4-215ENST00000492606 PLCG2P16885 1265 aa6.75□□□□□ -1.33
UBR4-215ENST00000492606 COL9A1P20849 921 aa6.75□□□□□ -1.33
UBR4-215ENST00000492606 OSBPP22059 807 aa6.75□□□□□ -1.33
UBR4-215ENST00000492606 NEUROD2Q15784 382 aa6.75□□□□□ -1.33
UBR4-215ENST00000492606 PRDM6Q9NQX0 595 aa6.75□□□□□ -1.33
UBR4-215ENST00000492606 FMN2Q9NZ56 1722 aa6.75□□□□□ -1.33
UBR4-215ENST00000492606 NRXN3Q9Y4C0 1643 aa6.75□□□□□ -1.33
UBR4-215ENST00000492606 TNRC6CQ9HCJ0 1690 aaKnown RBP6.74□□□□□ -1.33
UBR4-215ENST00000492606 PKD1L2Q7Z442 2459 aa6.74□□□□□ -1.33
UBR4-215ENST00000492606 HDGFP51858 240 aaKnown RBP6.74□□□□□ -1.33
UBR4-215ENST00000492606 KRT28Q7Z3Y7 464 aa6.74□□□□□ -1.33
UBR4-215ENST00000492606 L3MBTL3Q96JM7 780 aaPredicted RBP6.74□□□□□ -1.33
UBR4-215ENST00000492606 CD2APQ9Y5K6 639 aa6.74□□□□□ -1.33
UBR4-215ENST00000492606 TNS3Q68CZ2 1445 aa6.74□□□□□ -1.33
UBR4-215ENST00000492606 PNPLA7Q6ZV29 1317 aa6.74□□□□□ -1.33
UBR4-215ENST00000492606 IGSF1Q8N6C5 1336 aa6.74□□□□□ -1.33
UBR4-215ENST00000492606 TUBGCP6Q96RT7 1819 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 QSER1Q2KHR3 1735 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 VCANP13611 3396 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 LRPPRCP42704 1394 aaKnown RBP6.73□□□□□ -1.33
UBR4-215ENST00000492606 EIF2AK4Q9P2K8 1649 aaKnown RBP6.73□□□□□ -1.33
UBR4-215ENST00000492606 PLA2G5P39877 138 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 AK7Q96M32 723 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 OVOS2A0A0G2JMS6 1433 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 OVOS2A0A0J9YW53 1432 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 OVOS2Q6IE36 1432 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 PKD1L3Q7Z443 1732 aa6.73□□□□□ -1.33
UBR4-215ENST00000492606 TRIM66O15016 1216 aa6.72□□□□□ -1.33
UBR4-215ENST00000492606 DGKZQ13574 1117 aa6.72□□□□□ -1.33
UBR4-215ENST00000492606 NBPF15Q8N660 670 aa6.72□□□□□ -1.33
UBR4-215ENST00000492606 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.72□□□□□ -1.33
UBR4-215ENST00000492606 TSKSQ9UJT2 592 aa6.72□□□□□ -1.33
UBR4-215ENST00000492606 ATP7BP35670 1465 aa6.72□□□□□ -1.33
UBR4-215ENST00000492606 PARP4Q9UKK3 1724 aaKnown RBP6.71□□□□□ -1.34
UBR4-215ENST00000492606 HFM1A2PYH4 1435 aa6.71□□□□□ -1.34
UBR4-215ENST00000492606 MAP3K9P80192 1104 aa6.71□□□□□ -1.34
UBR4-215ENST00000492606 STRN4Q9NRL3 753 aa6.71□□□□□ -1.34
UBR4-215ENST00000492606 SLC52A1Q9NWF4 448 aa6.71□□□□□ -1.34
UBR4-215ENST00000492606 KDM2BQ8NHM5 1336 aa6.71□□□□□ -1.34
UBR4-215ENST00000492606 NUTM2FA1L443 756 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms