RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 C1QTNF8P60827 252 aa11.81□□□□□ -0.52
USP39-216ENST00000490193 USP31Q70CQ4 1352 aa11.8□□□□□ -0.52
USP39-216ENST00000490193 CSB-PGBD3P0DP91 1061 aa11.8□□□□□ -0.52
USP39-216ENST00000490193 SYT17Q9BSW7 474 aa11.8□□□□□ -0.52
USP39-216ENST00000490193 FHDC1Q9C0D6 1143 aaPredicted RBP11.8□□□□□ -0.52
USP39-216ENST00000490193 KTN1Q86UP2 1357 aaKnown RBP11.79□□□□□ -0.52
USP39-216ENST00000490193 ERBB3P21860 1342 aa11.79□□□□□ -0.52
USP39-216ENST00000490193 SBNO2Q9Y2G9 1366 aa11.79□□□□□ -0.52
USP39-216ENST00000490193 FAM208AQ9UK61 1670 aaKnown RBP11.78□□□□□ -0.52
USP39-216ENST00000490193 L3MBTL2Q969R5 705 aa11.78□□□□□ -0.52
USP39-216ENST00000490193 CD163L1Q9NR16 1453 aa11.77□□□□□ -0.52
USP39-216ENST00000490193 MKRN4PQ13434 485 aaPredicted RBP11.77□□□□□ -0.53
USP39-216ENST00000490193 LHX8Q68G74 356 aa11.77□□□□□ -0.53
USP39-216ENST00000490193 SOX12O15370 315 aa11.76□□□□□ -0.53
USP39-216ENST00000490193 ARXQ96QS3 562 aa11.76□□□□□ -0.53
USP39-216ENST00000490193 ROCK2O75116 1388 aaKnown RBP11.76□□□□□ -0.53
USP39-216ENST00000490193 TUBGCP6Q96RT7 1819 aa11.75□□□□□ -0.53
USP39-216ENST00000490193 IL2RBP14784 551 aa11.75□□□□□ -0.53
USP39-216ENST00000490193 LY75O60449 1722 aa11.74□□□□□ -0.53
USP39-216ENST00000490193 ACSBG1Q96GR2 724 aa11.74□□□□□ -0.53
USP39-216ENST00000490193 CEP350Q5VT06 3117 aa11.74□□□□□ -0.53
USP39-216ENST00000490193 KAT6BQ8WYB5 2073 aa11.74□□□□□ -0.53
USP39-216ENST00000490193 ZNF827Q17R98 1081 aa11.73□□□□□ -0.53
USP39-216ENST00000490193 EDC4Q6P2E9 1401 aaKnown RBP11.73□□□□□ -0.53
USP39-216ENST00000490193 SLC16A10Q8TF71 515 aa11.73□□□□□ -0.53
USP39-216ENST00000490193 LRRC4BQ9NT99 713 aa11.73□□□□□ -0.53
USP39-216ENST00000490193 NLRP2Q9NX02 1062 aa11.73□□□□□ -0.53
USP39-216ENST00000490193 GOLGB1Q14789 3259 aaKnown RBP11.72□□□□□ -0.53
USP39-216ENST00000490193 SLC27A3Q5K4L6 730 aa11.72□□□□□ -0.53
USP39-216ENST00000490193 DOT1LQ8TEK3 1739 aa11.72□□□□□ -0.53
USP39-216ENST00000490193 SHANK3Q9BYB0 1731 aa11.72□□□□□ -0.53
USP39-216ENST00000490193 NME9Q86XW9 330 aa11.71□□□□□ -0.53
USP39-216ENST00000490193 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP39-216ENST00000490193 ANKRD24Q8TF21 1146 aa11.71□□□□□ -0.53
USP39-216ENST00000490193 PNPLA7Q6ZV29 1317 aa11.69□□□□□ -0.54
USP39-216ENST00000490193 A0A1W2PP64 1363 aa11.68□□□□□ -0.54
USP39-216ENST00000490193 ANKRD36BQ8N2N9 1353 aa11.68□□□□□ -0.54
USP39-216ENST00000490193 HDGFL2Q7Z4V5 671 aaPredicted RBP11.68□□□□□ -0.54
USP39-216ENST00000490193 IP6K1Q92551 441 aa11.68□□□□□ -0.54
USP39-216ENST00000490193 PUS7Q96PZ0 661 aaKnown RBP11.68□□□□□ -0.54
USP39-216ENST00000490193 SIN3AQ96ST3 1273 aa11.68□□□□□ -0.54
USP39-216ENST00000490193 NSD2O96028 1365 aa11.67□□□□□ -0.54
USP39-216ENST00000490193 RGPD2P0DJD1 1756 aa11.67□□□□□ -0.54
USP39-216ENST00000490193 GIGYF1O75420 1035 aaPredicted RBP11.67□□□□□ -0.54
USP39-216ENST00000490193 POLD1P28340 1107 aa11.67□□□□□ -0.54
USP39-216ENST00000490193 GPR162Q16538 588 aa11.67□□□□□ -0.54
USP39-216ENST00000490193 SLC12A5Q9H2X9 1139 aa11.66□□□□□ -0.54
USP39-216ENST00000490193 TERF2IPQ9NYB0 399 aa11.66□□□□□ -0.54
USP39-216ENST00000490193 DDX54Q8TDD1 881 aaKnown RBP11.65□□□□□ -0.54
USP39-216ENST00000490193 TMC1Q8TDI8 760 aa11.65□□□□□ -0.54
USP39-216ENST00000490193 PRR29P0C7W0 189 aa11.64□□□□□ -0.55
USP39-216ENST00000490193 CLCN6P51797 869 aa11.64□□□□□ -0.55
USP39-216ENST00000490193 CARD11Q9BXL7 1154 aa11.64□□□□□ -0.55
USP39-216ENST00000490193 TFCP2L1Q9NZI6 479 aa11.64□□□□□ -0.55
USP39-216ENST00000490193 TAF1LQ8IZX4 1826 aa11.64□□□□□ -0.55
USP39-216ENST00000490193 C5P01031 1676 aa11.64□□□□□ -0.55
USP39-216ENST00000490193 MEGF6O75095 1541 aa11.64□□□□□ -0.55
USP39-216ENST00000490193 PRIM1P49642 420 aaKnown RBP11.63□□□□□ -0.55
USP39-216ENST00000490193 NEUROD1Q13562 356 aa11.63□□□□□ -0.55
USP39-216ENST00000490193 CHADLQ6NUI6 762 aa11.63□□□□□ -0.55
USP39-216ENST00000490193 NLGN2Q8NFZ4 835 aa11.63□□□□□ -0.55
USP39-216ENST00000490193 RTL1A6NKG5 1358 aa11.63□□□□□ -0.55
USP39-216ENST00000490193 MAP3K19Q56UN5 1328 aa11.62□□□□□ -0.55
USP39-216ENST00000490193 HOXC9P31274 260 aa11.62□□□□□ -0.55
USP39-216ENST00000490193 ZCRB1Q8TBF4 217 aaKnown RBP11.62□□□□□ -0.55
USP39-216ENST00000490193 CGNL1Q0VF96 1302 aa11.61□□□□□ -0.55
USP39-216ENST00000490193 GRIN3BO60391 1043 aa11.61□□□□□ -0.55
USP39-216ENST00000490193 KCNQ4P56696 695 aa11.61□□□□□ -0.55
USP39-216ENST00000490193 KLHL34Q8N239 644 aa11.61□□□□□ -0.55
USP39-216ENST00000490193 SYTL4Q96C24 671 aaPredicted RBP11.61□□□□□ -0.55
USP39-216ENST00000490193 USP47Q96K76 1375 aa11.6□□□□□ -0.55
USP39-216ENST00000490193 YBX3P16989 372 aaKnown RBP eCLIP11.6□□□□□ -0.556e-7■■□□□ 12.2
USP39-216ENST00000490193 LTV1Q96GA3 475 aaPredicted RBP11.6□□□□□ -0.55
USP39-216ENST00000490193 COG3Q96JB2 828 aa11.6□□□□□ -0.55
USP39-216ENST00000490193 CCNL1Q9UK58 526 aaPredicted RBP11.6□□□□□ -0.55
USP39-216ENST00000490193 HMGB2P26583 209 aaKnown RBP11.59□□□□□ -0.55
USP39-216ENST00000490193 AMPHP49418 695 aa11.59□□□□□ -0.55
USP39-216ENST00000490193 COL23A1Q86Y22 540 aaPredicted RBP11.59□□□□□ -0.55
USP39-216ENST00000490193 PELP1Q8IZL8 1130 aaKnown RBP11.59□□□□□ -0.55
USP39-216ENST00000490193 TESK2Q96S53 571 aa11.59□□□□□ -0.55
USP39-216ENST00000490193 ITGB4P16144 1822 aa11.58□□□□□ -0.56
USP39-216ENST00000490193 PKD1L3Q7Z443 1732 aa11.58□□□□□ -0.56
USP39-216ENST00000490193 TOGARAM1Q9Y4F4 1720 aa11.58□□□□□ -0.56
USP39-216ENST00000490193 SLC24A1O60721 1099 aa11.58□□□□□ -0.56
USP39-216ENST00000490193 C4BP0C0L5 1744 aa11.57□□□□□ -0.56
USP39-216ENST00000490193 UBR3Q6ZT12 1888 aa11.57□□□□□ -0.56
USP39-216ENST00000490193 ADCY9O60503 1353 aa11.57□□□□□ -0.56
USP39-216ENST00000490193 FLAD1Q8NFF5 587 aa11.57□□□□□ -0.56
USP39-216ENST00000490193 CD2APQ9Y5K6 639 aa11.57□□□□□ -0.56
USP39-216ENST00000490193 KIF20BQ96Q89 1820 aa11.57□□□□□ -0.56
USP39-216ENST00000490193 SMG6Q86US8 1419 aaKnown RBP11.57□□□□□ -0.56
USP39-216ENST00000490193 ATP10DQ9P241 1426 aa11.57□□□□□ -0.56
USP39-216ENST00000490193 KIF24Q5T7B8 1368 aa11.56□□□□□ -0.56
USP39-216ENST00000490193 NBPF6Q5VWK0 638 aa11.56□□□□□ -0.56
USP39-216ENST00000490193 NBPF4Q96M43 638 aa11.56□□□□□ -0.56
USP39-216ENST00000490193 MAP2P11137 1827 aaKnown RBP11.56□□□□□ -0.56
USP39-216ENST00000490193 INSRP06213 1382 aa11.55□□□□□ -0.56
USP39-216ENST00000490193 FBLN1P23142 703 aa11.55□□□□□ -0.56
USP39-216ENST00000490193 RAPGEF4Q8WZA2 1011 aa11.55□□□□□ -0.56
USP39-216ENST00000490193 PCDH11XQ9BZA7 1347 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms