RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 C10orf71Q711Q0 1435 aa17.25■□□□□ 0.35
TRIM56-204ENST00000487252 CCNL1Q9UK58 526 aaPredicted RBP17.25■□□□□ 0.35
TRIM56-204ENST00000487252 PPARGC1BQ86YN6 1023 aaKnown RBP17.24■□□□□ 0.35
TRIM56-204ENST00000487252 DOT1LQ8TEK3 1739 aa17.24■□□□□ 0.35
TRIM56-204ENST00000487252 C5P01031 1676 aa17.23■□□□□ 0.35
TRIM56-204ENST00000487252 FLAD1Q8NFF5 587 aa17.23■□□□□ 0.35
TRIM56-204ENST00000487252 CABP1Q9NZU7 370 aa17.23■□□□□ 0.35
TRIM56-204ENST00000487252 KIAA1551Q9HCM1 1747 aa17.22■□□□□ 0.35
TRIM56-204ENST00000487252 PRIM1P49642 420 aaKnown RBP17.22■□□□□ 0.35
TRIM56-204ENST00000487252 SRPK2P78362 688 aaKnown RBP17.22■□□□□ 0.35
TRIM56-204ENST00000487252 DCAF11Q8TEB1 546 aa17.22■□□□□ 0.35
TRIM56-204ENST00000487252 NLRP2Q9NX02 1062 aa17.22■□□□□ 0.35
TRIM56-204ENST00000487252 KDM2AQ9Y2K7 1162 aa17.22■□□□□ 0.35
TRIM56-204ENST00000487252 CABP2Q9NPB3 220 aa17.21■□□□□ 0.35
TRIM56-204ENST00000487252 TAF1LQ8IZX4 1826 aa17.21■□□□□ 0.35
TRIM56-204ENST00000487252 KIF13BQ9NQT8 1826 aa17.2■□□□□ 0.34
TRIM56-204ENST00000487252 TOGARAM1Q9Y4F4 1720 aa17.2■□□□□ 0.34
TRIM56-204ENST00000487252 TTC21BQ7Z4L5 1316 aa17.2■□□□□ 0.34
TRIM56-204ENST00000487252 C16orf71Q8IYS4 520 aaPredicted RBP17.19■□□□□ 0.34
TRIM56-204ENST00000487252 SOX12O15370 315 aa17.18■□□□□ 0.34
TRIM56-204ENST00000487252 DDX54Q8TDD1 881 aaKnown RBP17.18■□□□□ 0.34
TRIM56-204ENST00000487252 SYTL4Q96C24 671 aaPredicted RBP17.17■□□□□ 0.34
TRIM56-204ENST00000487252 PXDNLA1KZ92 1463 aa17.17■□□□□ 0.34
TRIM56-204ENST00000487252 TTC21AQ8NDW8 1320 aa17.17■□□□□ 0.34
TRIM56-204ENST00000487252 PLEKHG2Q9H7P9 1386 aa17.16■□□□□ 0.34
TRIM56-204ENST00000487252 KIAA1210Q9ULL0 1709 aa17.16■□□□□ 0.34
TRIM56-204ENST00000487252 TNRC6CQ9HCJ0 1690 aaKnown RBP17.16■□□□□ 0.34
TRIM56-204ENST00000487252 PKD1L3Q7Z443 1732 aa17.16■□□□□ 0.34
TRIM56-204ENST00000487252 LTN1O94822 1766 aa17.15■□□□□ 0.34
TRIM56-204ENST00000487252 AMIGO3Q86WK7 504 aa17.15■□□□□ 0.34
TRIM56-204ENST00000487252 UBR3Q6ZT12 1888 aa17.15■□□□□ 0.34
TRIM56-204ENST00000487252 USP47Q96K76 1375 aa17.15■□□□□ 0.34
TRIM56-204ENST00000487252 HMGB2P26583 209 aaKnown RBP17.14■□□□□ 0.33
TRIM56-204ENST00000487252 SMC1BQ8NDV3 1235 aa17.14■□□□□ 0.33
TRIM56-204ENST00000487252 ZNF692Q9BU19 519 aaPredicted RBP17.14■□□□□ 0.33
TRIM56-204ENST00000487252 KCPQ6ZWJ8 1503 aa17.14■□□□□ 0.33
TRIM56-204ENST00000487252 BRCA1P38398 1863 aaKnown RBP17.14■□□□□ 0.33
TRIM56-204ENST00000487252 C4BP0C0L5 1744 aa17.13■□□□□ 0.33
TRIM56-204ENST00000487252 N4BP2Q86UW6 1770 aaPredicted RBP17.13■□□□□ 0.33
TRIM56-204ENST00000487252 ANKRD24Q8TF21 1146 aa17.13■□□□□ 0.33
TRIM56-204ENST00000487252 FAM208AQ9UK61 1670 aaKnown RBP17.11■□□□□ 0.33
TRIM56-204ENST00000487252 KDM2BQ8NHM5 1336 aa17.11■□□□□ 0.33
TRIM56-204ENST00000487252 CENPJQ9HC77 1338 aaPredicted RBP17.11■□□□□ 0.33
TRIM56-204ENST00000487252 USP31Q70CQ4 1352 aa17.11■□□□□ 0.33
TRIM56-204ENST00000487252 TGFB2P61812 414 aa17.1■□□□□ 0.33
TRIM56-204ENST00000487252 FAM161AQ3B820 660 aa17.1■□□□□ 0.33
TRIM56-204ENST00000487252 C9orf131Q5VYM1 1079 aa17.1■□□□□ 0.33
TRIM56-204ENST00000487252 ARHGAP27Q6ZUM4 889 aa17.1■□□□□ 0.33
TRIM56-204ENST00000487252 BCS1LQ9Y276 419 aa17.1■□□□□ 0.33
TRIM56-204ENST00000487252 ARFGEF1Q9Y6D6 1849 aa17.1■□□□□ 0.33
TRIM56-204ENST00000487252 RRAGCQ9HB90 399 aa17.09■□□□□ 0.33
TRIM56-204ENST00000487252 PRDM10Q9NQV6 1147 aa17.09■□□□□ 0.33
TRIM56-204ENST00000487252 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.07■□□□□ 0.32
TRIM56-204ENST00000487252 NSD3Q9BZ95 1437 aa17.06■□□□□ 0.32
TRIM56-204ENST00000487252 MON2Q7Z3U7 1717 aa17.05■□□□□ 0.32
TRIM56-204ENST00000487252 A0A0G2JLW4 131 aa17.05■□□□□ 0.32
TRIM56-204ENST00000487252 NBPF1Q3BBV0 1214 aa17.05■□□□□ 0.32
TRIM56-204ENST00000487252 SMIM5Q71RC9 77 aa17.05■□□□□ 0.32
TRIM56-204ENST00000487252 SBF1O95248 1867 aa17.05■□□□□ 0.32
TRIM56-204ENST00000487252 PALLDQ8WX93 1383 aa17.04■□□□□ 0.32
TRIM56-204ENST00000487252 FOXN1O15353 648 aa17.04■□□□□ 0.32
TRIM56-204ENST00000487252 SSFA2P28290 1259 aa17.04■□□□□ 0.32
TRIM56-204ENST00000487252 ZCRB1Q8TBF4 217 aaKnown RBP17.04■□□□□ 0.32
TRIM56-204ENST00000487252 MEGF6O75095 1541 aa17.03■□□□□ 0.32
TRIM56-204ENST00000487252 AK7Q96M32 723 aa17.03■□□□□ 0.32
TRIM56-204ENST00000487252 KCNA3P22001 575 aa17.02■□□□□ 0.32
TRIM56-204ENST00000487252 RGS19P49795 217 aa17.02■□□□□ 0.32
TRIM56-204ENST00000487252 KTN1Q86UP2 1357 aaKnown RBP17.02■□□□□ 0.31
TRIM56-204ENST00000487252 MAP2P11137 1827 aaKnown RBP17.01■□□□□ 0.31
TRIM56-204ENST00000487252 FCHSD2O94868 740 aa17.01■□□□□ 0.31
TRIM56-204ENST00000487252 PHF14O94880 888 aa17.01■□□□□ 0.31
TRIM56-204ENST00000487252 MMP10P09238 476 aa17.01■□□□□ 0.31
TRIM56-204ENST00000487252 DPEP1P16444 411 aa17.01■□□□□ 0.31
TRIM56-204ENST00000487252 IP6K1Q92551 441 aa17■□□□□ 0.31
TRIM56-204ENST00000487252 EVC2Q86UK5 1308 aa16.99■□□□□ 0.31
TRIM56-204ENST00000487252 ABHD8Q96I13 439 aa16.99■□□□□ 0.31
TRIM56-204ENST00000487252 DCAF5Q96JK2 942 aa16.99■□□□□ 0.31
TRIM56-204ENST00000487252 RNF181Q9P0P0 153 aa16.99■□□□□ 0.31
TRIM56-204ENST00000487252 ZC3H4Q9UPT8 1303 aaKnown RBP16.98■□□□□ 0.31
TRIM56-204ENST00000487252 RGPD2P0DJD1 1756 aa16.98■□□□□ 0.31
TRIM56-204ENST00000487252 MLLT1Q03111 559 aaPredicted RBP16.98■□□□□ 0.31
TRIM56-204ENST00000487252 NME9Q86XW9 330 aa16.97■□□□□ 0.31
TRIM56-204ENST00000487252 SBNO2Q9Y2G9 1366 aa16.97■□□□□ 0.31
TRIM56-204ENST00000487252 KDM6AO15550 1401 aaPredicted RBP16.96■□□□□ 0.31
TRIM56-204ENST00000487252 VEGFAP15692 232 aaPredicted RBP16.96■□□□□ 0.31
TRIM56-204ENST00000487252 CTCFP49711 727 aaPredicted RBP16.96■□□□□ 0.31
TRIM56-204ENST00000487252 CREBZFQ9NS37 354 aa16.96■□□□□ 0.31
TRIM56-204ENST00000487252 ITGB4P16144 1822 aa16.96■□□□□ 0.3
TRIM56-204ENST00000487252 C4AP0C0L4 1744 aa16.96■□□□□ 0.3
TRIM56-204ENST00000487252 PIAS4Q8N2W9 510 aaPredicted RBP16.95■□□□□ 0.3
TRIM56-204ENST00000487252 SMARCC1Q92922 1105 aaPredicted RBP16.95■□□□□ 0.3
TRIM56-204ENST00000487252 CGNL1Q0VF96 1302 aa16.95■□□□□ 0.3
TRIM56-204ENST00000487252 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.94■□□□□ 0.3
TRIM56-204ENST00000487252 LINC00116Q8NCU8 138 aa16.94■□□□□ 0.3
TRIM56-204ENST00000487252 CD163L1Q9NR16 1453 aa16.93■□□□□ 0.3
TRIM56-204ENST00000487252 TNRC18O15417 2968 aaPredicted RBP16.93■□□□□ 0.3
TRIM56-204ENST00000487252 GLTPD2A6NH11 291 aa16.93■□□□□ 0.3
TRIM56-204ENST00000487252 CNTNAP1P78357 1384 aa16.92■□□□□ 0.3
TRIM56-204ENST00000487252 MPRIPQ6WCQ1 1025 aa16.92■□□□□ 0.3
TRIM56-204ENST00000487252 NLGN1Q8N2Q7 840 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms