RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 NISCHQ9Y2I1 1504 aa30.91■■■□□ 2.54
TRIM56-204ENST00000487252 ABCC9O60706 1549 aa29.11■■■□□ 2.25
TRIM56-204ENST00000487252 DNAJC5BQ9UF47 199 aa28.32■■■□□ 2.12
TRIM56-204ENST00000487252 CCDC180Q9P1Z9 1646 aa28.21■■■□□ 2.11
TRIM56-204ENST00000487252 RB1CC1Q8TDY2 1594 aa27.31■■□□□ 1.96
TRIM56-204ENST00000487252 PABPN1Q86U42 306 aaKnown RBP eCLIP26.91■■□□□ 1.9
TRIM56-204ENST00000487252 NACADO15069 1562 aa26.91■■□□□ 1.9
TRIM56-204ENST00000487252 DNAJC5Q9H3Z4 198 aa26.77■■□□□ 1.88
TRIM56-204ENST00000487252 UNC13AQ9UPW8 1703 aa26.73■■□□□ 1.87
TRIM56-204ENST00000487252 BICRAQ9NZM4 1560 aa26.63■■□□□ 1.85
TRIM56-204ENST00000487252 CECR2Q9BXF3 1484 aa26.37■■□□□ 1.81
TRIM56-204ENST00000487252 CC2D2AQ9P2K1 1620 aa26.31■■□□□ 1.8
TRIM56-204ENST00000487252 DCAF8L2P0C7V8 631 aa26.3■■□□□ 1.8
TRIM56-204ENST00000487252 MYO15BQ96JP2 1530 aa26.28■■□□□ 1.8
TRIM56-204ENST00000487252 SHROOM4Q9ULL8 1493 aa26.18■■□□□ 1.78
TRIM56-204ENST00000487252 EIF4G1Q04637 1599 aaKnown RBP26.01■■□□□ 1.75
TRIM56-204ENST00000487252 CUX2O14529 1486 aa25.6■■□□□ 1.69
TRIM56-204ENST00000487252 DCAF1Q9Y4B6 1507 aa25.53■■□□□ 1.68
TRIM56-204ENST00000487252 SCRIBQ14160 1630 aa25.53■■□□□ 1.68
TRIM56-204ENST00000487252 ZCCHC6Q5VYS8 1495 aaKnown RBP25.4■■□□□ 1.66
TRIM56-204ENST00000487252 ERCC6Q03468 1493 aa25.17■■□□□ 1.62
TRIM56-204ENST00000487252 TRIM41Q8WV44 630 aa24.99■■□□□ 1.59
TRIM56-204ENST00000487252 NCAPD3P42695 1498 aa24.89■■□□□ 1.57
TRIM56-204ENST00000487252 THOC2Q8NI27 1593 aaKnown RBP24.76■■□□□ 1.55
TRIM56-204ENST00000487252 NESP48681 1621 aa24.75■■□□□ 1.55
TRIM56-204ENST00000487252 ATAD2BQ9ULI0 1458 aa24.62■■□□□ 1.53
TRIM56-204ENST00000487252 HMGXB3Q12766 1538 aa24.59■■□□□ 1.53
TRIM56-204ENST00000487252 SMARCA2P51531 1590 aa24.48■■□□□ 1.51
TRIM56-204ENST00000487252 LAMC3Q9Y6N6 1575 aa24.45■■□□□ 1.5
TRIM56-204ENST00000487252 KIF21AQ7Z4S6 1674 aa24.4■■□□□ 1.5
TRIM56-204ENST00000487252 SMARCA4P51532 1647 aa24.32■■□□□ 1.48
TRIM56-204ENST00000487252 PDS5BQ9NTI5 1447 aa24.3■■□□□ 1.48
TRIM56-204ENST00000487252 BAZ1AQ9NRL2 1556 aaPredicted RBP24.27■■□□□ 1.48
TRIM56-204ENST00000487252 BAZ1BQ9UIG0 1483 aaKnown RBP24.26■■□□□ 1.47
TRIM56-204ENST00000487252 OSCARQ8IYS5 282 aa24.19■■□□□ 1.46
TRIM56-204ENST00000487252 WDR62O43379 1518 aa24.19■■□□□ 1.46
TRIM56-204ENST00000487252 PEG3Q9GZU2 1588 aa24.18■■□□□ 1.46
TRIM56-204ENST00000487252 MRC2Q9UBG0 1479 aa24.16■■□□□ 1.46
TRIM56-204ENST00000487252 RIMBP3CA6NJZ7 1639 aa24.03■■□□□ 1.44
TRIM56-204ENST00000487252 RIMBP3BA6NNM3 1639 aa24.03■■□□□ 1.44
TRIM56-204ENST00000487252 RIMBP3Q9UFD9 1639 aa24.03■■□□□ 1.44
TRIM56-204ENST00000487252 CADPSQ9ULU8 1353 aa24.02■■□□□ 1.44
TRIM56-204ENST00000487252 ARHGEF11O15085 1522 aa23.85■■□□□ 1.41
TRIM56-204ENST00000487252 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
TRIM56-204ENST00000487252 MROH2BQ7Z745 1585 aa23.78■■□□□ 1.4
TRIM56-204ENST00000487252 FANCD2Q9BXW9 1451 aa23.73■■□□□ 1.39
TRIM56-204ENST00000487252 AEBP2Q6ZN18 517 aaPredicted RBP23.72■■□□□ 1.39
TRIM56-204ENST00000487252 TRHP20396 242 aaPredicted RBP23.65■■□□□ 1.38
TRIM56-204ENST00000487252 CYB5RLQ6IPT4 315 aa23.65■■□□□ 1.38
TRIM56-204ENST00000487252 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.37
TRIM56-204ENST00000487252 CFTRP13569 1480 aa23.56■■□□□ 1.36
TRIM56-204ENST00000487252 ARAP1Q96P48 1450 aa23.55■■□□□ 1.36
TRIM56-204ENST00000487252 ZNF608Q9ULD9 1512 aaPredicted RBP23.49■■□□□ 1.35
TRIM56-204ENST00000487252 WIZO95785 1651 aa23.42■■□□□ 1.34
TRIM56-204ENST00000487252 IFT140Q96RY7 1462 aa23.42■■□□□ 1.34
TRIM56-204ENST00000487252 RSF1Q96T23 1441 aaPredicted RBP23.39■■□□□ 1.33
TRIM56-204ENST00000487252 CHD1O14646 1710 aa23.32■■□□□ 1.32
TRIM56-204ENST00000487252 EIF4G3O43432 1585 aaKnown RBP23.31■■□□□ 1.32
TRIM56-204ENST00000487252 PRDM2Q13029 1718 aa23.22■■□□□ 1.31
TRIM56-204ENST00000487252 TOPBP1Q92547 1522 aa23.18■■□□□ 1.3
TRIM56-204ENST00000487252 AQRO60306 1485 aaKnown RBP eCLIP23.12■■□□□ 1.29
TRIM56-204ENST00000487252 TARBP1Q13395 1621 aaKnown RBP23.1■■□□□ 1.29
TRIM56-204ENST00000487252 CLASP1Q7Z460 1538 aa23.09■■□□□ 1.29
TRIM56-204ENST00000487252 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.28
TRIM56-204ENST00000487252 ABCC8Q09428 1581 aa23.07■■□□□ 1.28
TRIM56-204ENST00000487252 FBLN2P98095 1184 aa23.05■■□□□ 1.28
TRIM56-204ENST00000487252 DNMBPQ6XZF7 1577 aa23■■□□□ 1.27
TRIM56-204ENST00000487252 ILDR1Q86SU0 546 aaPredicted RBP22.96■■□□□ 1.27
TRIM56-204ENST00000487252 SYNJ1O43426 1573 aa22.91■■□□□ 1.26
TRIM56-204ENST00000487252 POLA1P09884 1462 aaPredicted RBP22.88■■□□□ 1.25
TRIM56-204ENST00000487252 GAPVD1Q14C86 1478 aa22.86■■□□□ 1.25
TRIM56-204ENST00000487252 SNAPC4Q5SXM2 1469 aa22.85■■□□□ 1.25
TRIM56-204ENST00000487252 CCDC88BA6NC98 1476 aa22.82■■□□□ 1.24
TRIM56-204ENST00000487252 WDR97A6NE52 1622 aa22.8■■□□□ 1.24
TRIM56-204ENST00000487252 TDRD9Q8NDG6 1382 aaKnown RBP22.79■■□□□ 1.24
TRIM56-204ENST00000487252 MAGI1Q96QZ7 1491 aaPredicted RBP22.79■■□□□ 1.24
TRIM56-204ENST00000487252 RAD54L2Q9Y4B4 1467 aa22.78■■□□□ 1.24
TRIM56-204ENST00000487252 CHMP7Q8WUX9 453 aaPredicted RBP22.77■■□□□ 1.24
TRIM56-204ENST00000487252 SOGA1O94964 1423 aa22.72■■□□□ 1.23
TRIM56-204ENST00000487252 SYNJ2O15056 1496 aa22.72■■□□□ 1.23
TRIM56-204ENST00000487252 KIF13AQ9H1H9 1805 aa22.69■■□□□ 1.22
TRIM56-204ENST00000487252 GRIN2BQ13224 1484 aa22.66■■□□□ 1.22
TRIM56-204ENST00000487252 KDM4FA0A1W2PPD8 638 aa22.63■■□□□ 1.21
TRIM56-204ENST00000487252 ERCC6L2Q5T890 1561 aa22.61■■□□□ 1.21
TRIM56-204ENST00000487252 FGD5Q6ZNL6 1462 aa22.56■■□□□ 1.2
TRIM56-204ENST00000487252 PBRM1Q86U86 1689 aa22.49■■□□□ 1.19
TRIM56-204ENST00000487252 CEP170Q5SW79 1584 aa22.47■■□□□ 1.19
TRIM56-204ENST00000487252 SHROOM2Q13796 1616 aa22.43■■□□□ 1.18
TRIM56-204ENST00000487252 CUX1P39880 1505 aa22.41■■□□□ 1.18
TRIM56-204ENST00000487252 ABCC10Q5T3U5 1492 aa22.41■■□□□ 1.18
TRIM56-204ENST00000487252 NUP160Q12769 1436 aa22.4■■□□□ 1.18
TRIM56-204ENST00000487252 GRIN2AQ12879 1464 aa22.38■■□□□ 1.17
TRIM56-204ENST00000487252 ABCA5Q8WWZ7 1642 aa22.36■■□□□ 1.17
TRIM56-204ENST00000487252 KDM6BO15054 1643 aa22.35■■□□□ 1.17
TRIM56-204ENST00000487252 FAM69CQ0P6D2 419 aa22.34■■□□□ 1.17
TRIM56-204ENST00000487252 DIP2BQ9P265 1576 aa22.32■■□□□ 1.16
TRIM56-204ENST00000487252 MAPKBP1O60336 1514 aa22.31■■□□□ 1.16
TRIM56-204ENST00000487252 ABCA10Q8WWZ4 1543 aa22.29■■□□□ 1.16
TRIM56-204ENST00000487252 ADAMTS12P58397 1594 aa22.24■■□□□ 1.15
TRIM56-204ENST00000487252 HECW2Q9P2P5 1572 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms