RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 UNC13BO14795 1591 aa16.11■□□□□ 0.17
HMGN1-216ENST00000486741 CABP4P57796 275 aa16.11■□□□□ 0.17
HMGN1-216ENST00000486741 HDAC1Q13547 482 aaPredicted RBP16.11■□□□□ 0.17
HMGN1-216ENST00000486741 TRAK2O60296 914 aa16.11■□□□□ 0.17
HMGN1-216ENST00000486741 HSP90AB4PQ58FF6 505 aa16.11■□□□□ 0.17
HMGN1-216ENST00000486741 RUFY2Q8WXA3 655 aa16.1■□□□□ 0.17
HMGN1-216ENST00000486741 MYOM2P54296 1465 aa16.1■□□□□ 0.17
HMGN1-216ENST00000486741 TBC1D9Q6ZT07 1266 aa16.1■□□□□ 0.17
HMGN1-216ENST00000486741 TRMT2AQ8IZ69 625 aaKnown RBP16.1■□□□□ 0.17
HMGN1-216ENST00000486741 RBM42Q9BTD8 480 aaKnown RBP16.1■□□□□ 0.17
HMGN1-216ENST00000486741 G2E3Q7L622 706 aa16.1■□□□□ 0.17
HMGN1-216ENST00000486741 PI4KAP2A4QPH2 592 aa16.09■□□□□ 0.17
HMGN1-216ENST00000486741 ERC2O15083 957 aa16.09■□□□□ 0.17
HMGN1-216ENST00000486741 NUCB1Q02818 461 aa16.09■□□□□ 0.17
HMGN1-216ENST00000486741 PI4KAP1Q8N8J0 262 aa16.09■□□□□ 0.17
HMGN1-216ENST00000486741 JARID2Q92833 1246 aaPredicted RBP16.09■□□□□ 0.17
HMGN1-216ENST00000486741 ZKSCAN1P17029 563 aaPredicted RBP16.09■□□□□ 0.17
HMGN1-216ENST00000486741 VSIG10Q8N0Z9 540 aa16.09■□□□□ 0.17
HMGN1-216ENST00000486741 IL27Q8NEV9 243 aa16.09■□□□□ 0.17
HMGN1-216ENST00000486741 TBX22Q9Y458 520 aa16.09■□□□□ 0.17
HMGN1-216ENST00000486741 CCDC85AQ96PX6 553 aaPredicted RBP16.09■□□□□ 0.17
HMGN1-216ENST00000486741 GTF2E1P29083 439 aaPredicted RBP16.08■□□□□ 0.17
HMGN1-216ENST00000486741 TBC1D32Q96NH3 1257 aa16.08■□□□□ 0.17
HMGN1-216ENST00000486741 ORAI2Q96SN7 254 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 FSD1Q9BTV5 496 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 EFCAB6Q5THR3 1501 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 TMEM2Q9UHN6 1383 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 ANKRD24Q8TF21 1146 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 DNAJC2Q99543 621 aaKnown RBP16.08■□□□□ 0.16
HMGN1-216ENST00000486741 UPF3BQ9BZI7 483 aaKnown RBP16.08■□□□□ 0.16
HMGN1-216ENST00000486741 TET3O43151 1660 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 ABCC3O15438 1527 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 CLASP1Q7Z460 1538 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 PIP4K2AP48426 406 aaPredicted RBP16.08■□□□□ 0.16
HMGN1-216ENST00000486741 PLEKHF1Q96S99 279 aa16.08■□□□□ 0.16
HMGN1-216ENST00000486741 TTC21AQ8NDW8 1320 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 CNTROBQ8N137 903 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 TOMM22Q9NS69 142 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 K7ELQ4 463 aaPredicted RBP16.07■□□□□ 0.16
HMGN1-216ENST00000486741 HSPA2P54652 639 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 SLC39A6Q13433 755 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 RABEP1Q15276 862 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 CWC27Q6UX04 472 aaKnown RBP16.07■□□□□ 0.16
HMGN1-216ENST00000486741 FOSBP53539 338 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 ARHGAP45Q92619 1136 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 SPG7Q9UQ90 795 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 E9PCH4 1651 aa16.07■□□□□ 0.16
HMGN1-216ENST00000486741 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.06■□□□□ 0.16
HMGN1-216ENST00000486741 VPS37CA5D8V6 355 aaPredicted RBP16.06■□□□□ 0.16
HMGN1-216ENST00000486741 KIF1BO60333 1816 aa16.06■□□□□ 0.16
HMGN1-216ENST00000486741 ZBTB7BO15156 539 aaPredicted RBP16.06■□□□□ 0.16
HMGN1-216ENST00000486741 HECW2Q9P2P5 1572 aa16.06■□□□□ 0.16
HMGN1-216ENST00000486741 AACSQ86V21 672 aa16.06■□□□□ 0.16
HMGN1-216ENST00000486741 EDC4Q6P2E9 1401 aaKnown RBP16.06■□□□□ 0.16
HMGN1-216ENST00000486741 MX1P20591 662 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 CHPF2Q9P2E5 772 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 PTMSP20962 102 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 MSNP26038 577 aaKnown RBP16.05■□□□□ 0.16
HMGN1-216ENST00000486741 DNAAF4Q8WXU2 420 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 ZFYVE9O95405 1425 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 SYNMO15061 1565 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 FLT4P35916 1363 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 HOXC9P31274 260 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 BMP2KLQ5H9B9 411 aa16.05■□□□□ 0.16
HMGN1-216ENST00000486741 PTPRCP08575 1304 aa16.04■□□□□ 0.16
HMGN1-216ENST00000486741 PRR36Q9H6K5 1346 aa16.04■□□□□ 0.16
HMGN1-216ENST00000486741 SMC5Q8IY18 1101 aa16.04■□□□□ 0.16
HMGN1-216ENST00000486741 NUCB2P80303 420 aa16.04■□□□□ 0.16
HMGN1-216ENST00000486741 INSRP06213 1382 aa16.04■□□□□ 0.16
HMGN1-216ENST00000486741 MCM4P33991 863 aa16.04■□□□□ 0.16
HMGN1-216ENST00000486741 LARP6Q9BRS8 491 aaKnown RBP16.04■□□□□ 0.16
HMGN1-216ENST00000486741 OTUD7AQ8TE49 926 aaPredicted RBP16.03■□□□□ 0.16
HMGN1-216ENST00000486741 DDX17Q92841 729 aaKnown RBP16.03■□□□□ 0.16
HMGN1-216ENST00000486741 GNL2Q13823 731 aaKnown RBP16.03■□□□□ 0.16
HMGN1-216ENST00000486741 PHAXQ9H814 394 aaKnown RBP16.03■□□□□ 0.16
HMGN1-216ENST00000486741 PPP1R42Q7Z4L9 355 aa16.03■□□□□ 0.16
HMGN1-216ENST00000486741 RNF17Q9BXT8 1623 aaKnown RBP16.02■□□□□ 0.16
HMGN1-216ENST00000486741 PRPF40AO75400 957 aaKnown RBP16.02■□□□□ 0.16
HMGN1-216ENST00000486741 SMC3Q9UQE7 1217 aa16.02■□□□□ 0.16
HMGN1-216ENST00000486741 MAP3K4Q9Y6R4 1608 aa16.02■□□□□ 0.16
HMGN1-216ENST00000486741 GCP02774 474 aa16.02■□□□□ 0.16
HMGN1-216ENST00000486741 AMOTQ4VCS5 1084 aa16.02■□□□□ 0.15
HMGN1-216ENST00000486741 ANKRD44Q8N8A2 993 aa16.02■□□□□ 0.15
HMGN1-216ENST00000486741 CCDC8Q9H0W5 538 aaPredicted RBP16.02■□□□□ 0.15
HMGN1-216ENST00000486741 MAP3K2Q9Y2U5 619 aa16.02■□□□□ 0.15
HMGN1-216ENST00000486741 ROBO2Q9HCK4 1378 aa16.02■□□□□ 0.15
HMGN1-216ENST00000486741 APPP05067 770 aa16.01■□□□□ 0.15
HMGN1-216ENST00000486741 SKOR2Q2VWA4 1001 aaPredicted RBP16.01■□□□□ 0.15
HMGN1-216ENST00000486741 CAVIN1Q6NZI2 390 aaKnown RBP16.01■□□□□ 0.15
HMGN1-216ENST00000486741 MYD88Q99836 296 aa16.01■□□□□ 0.15
HMGN1-216ENST00000486741 SDSP20132 328 aa16.01■□□□□ 0.15
HMGN1-216ENST00000486741 SYAP1Q96A49 352 aaPredicted RBP16.01■□□□□ 0.15
HMGN1-216ENST00000486741 SPHKAPQ2M3C7 1700 aa16.01■□□□□ 0.15
HMGN1-216ENST00000486741 ATP5J2-PTCD1G3V325 749 aa16.01■□□□□ 0.15
HMGN1-216ENST00000486741 DRC7Q8IY82 874 aa16.01■□□□□ 0.15
HMGN1-216ENST00000486741 DBF4Q9UBU7 674 aaPredicted RBP16.01■□□□□ 0.15
HMGN1-216ENST00000486741 ARAP3Q8WWN8 1544 aa16.01■□□□□ 0.15
HMGN1-216ENST00000486741 LGR6Q9HBX8 967 aa16■□□□□ 0.15
HMGN1-216ENST00000486741 MADDQ8WXG6 1647 aa16■□□□□ 0.15
HMGN1-216ENST00000486741 SHROOM2Q13796 1616 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms