RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 DEFB132Q7Z7B7 95 aa8.54□□□□□ -1.04
PTPN4-210ENST00000485247 TBX22Q9Y458 520 aa8.54□□□□□ -1.04
PTPN4-210ENST00000485247 ASXL1Q8IXJ9 1541 aa8.54□□□□□ -1.04
PTPN4-210ENST00000485247 PLEKHG1Q9ULL1 1385 aa8.53□□□□□ -1.04
PTPN4-210ENST00000485247 SLC24A1O60721 1099 aa8.53□□□□□ -1.04
PTPN4-210ENST00000485247 ZNF516Q92618 1163 aa8.53□□□□□ -1.04
PTPN4-210ENST00000485247 NECTIN2Q92692 538 aa8.53□□□□□ -1.04
PTPN4-210ENST00000485247 LRP5O75197 1615 aa8.52□□□□□ -1.05
PTPN4-210ENST00000485247 SLC4A3P48751 1232 aa8.52□□□□□ -1.05
PTPN4-210ENST00000485247 IL21Q9HBE4 155 aa8.52□□□□□ -1.05
PTPN4-210ENST00000485247 ADGRB3O60242 1522 aa8.52□□□□□ -1.05
PTPN4-210ENST00000485247 DUOX2Q9NRD8 1548 aa8.51□□□□□ -1.05
PTPN4-210ENST00000485247 CFHP08603 1231 aa8.51□□□□□ -1.05
PTPN4-210ENST00000485247 YY1P25490 414 aa8.51□□□□□ -1.05
PTPN4-210ENST00000485247 COPS2P61201 443 aa8.51□□□□□ -1.05
PTPN4-210ENST00000485247 MAP2K5Q13163 448 aa8.51□□□□□ -1.05
PTPN4-210ENST00000485247 LMOD2Q6P5Q4 547 aa8.51□□□□□ -1.05
PTPN4-210ENST00000485247 FNBP4Q8N3X1 1017 aaPredicted RBP8.51□□□□□ -1.05
PTPN4-210ENST00000485247 RRP7BPQ9NSQ0 103 aa8.51□□□□□ -1.05
PTPN4-210ENST00000485247 SLC52A1Q9NWF4 448 aa8.51□□□□□ -1.05
PTPN4-210ENST00000485247 KANK1Q14678 1352 aa8.5□□□□□ -1.05
PTPN4-210ENST00000485247 ATRNO75882 1429 aa8.5□□□□□ -1.05
PTPN4-210ENST00000485247 ZFYVE9O95405 1425 aa8.5□□□□□ -1.05
PTPN4-210ENST00000485247 BLMP54132 1417 aaPredicted RBP8.5□□□□□ -1.05
PTPN4-210ENST00000485247 SF3B2Q13435 895 aaKnown RBP8.5□□□□□ -1.05
PTPN4-210ENST00000485247 RIMS2Q9UQ26 1411 aa8.5□□□□□ -1.05
PTPN4-210ENST00000485247 AMOTL2Q9Y2J4 779 aa8.5□□□□□ -1.05
PTPN4-210ENST00000485247 NHSL1Q5SYE7 1610 aa8.5□□□□□ -1.05
PTPN4-210ENST00000485247 KIF15Q9NS87 1388 aa8.49□□□□□ -1.05
PTPN4-210ENST00000485247 MST1RQ04912 1400 aa8.49□□□□□ -1.05
PTPN4-210ENST00000485247 ACTN4O43707 911 aaKnown RBP8.49□□□□□ -1.05
PTPN4-210ENST00000485247 HRCP23327 699 aa8.49□□□□□ -1.05
PTPN4-210ENST00000485247 PCDHB3Q9Y5E6 796 aa8.49□□□□□ -1.05
PTPN4-210ENST00000485247 EP400Q96L91 3159 aa8.49□□□□□ -1.05
PTPN4-210ENST00000485247 NOS1P29475 1434 aa8.48□□□□□ -1.05
PTPN4-210ENST00000485247 ADAMTS13Q76LX8 1427 aa8.48□□□□□ -1.05
PTPN4-210ENST00000485247 IRF6O14896 467 aa8.48□□□□□ -1.05
PTPN4-210ENST00000485247 BLOC1S3Q6QNY0 202 aa8.48□□□□□ -1.05
PTPN4-210ENST00000485247 NKX2-3Q8TAU0 364 aa8.48□□□□□ -1.05
PTPN4-210ENST00000485247 GJD4Q96KN9 370 aaPredicted RBP8.48□□□□□ -1.05
PTPN4-210ENST00000485247 PRR14Q9BWN1 585 aa8.48□□□□□ -1.05
PTPN4-210ENST00000485247 DAXXQ9UER7 740 aaPredicted RBP8.48□□□□□ -1.05
PTPN4-210ENST00000485247 DCCP43146 1447 aa8.47□□□□□ -1.05
PTPN4-210ENST00000485247 ERBINQ96RT1 1412 aa8.47□□□□□ -1.05
PTPN4-210ENST00000485247 PIK3R4Q99570 1358 aa8.47□□□□□ -1.05
PTPN4-210ENST00000485247 PTPRUQ92729 1446 aa8.46□□□□□ -1.05
PTPN4-210ENST00000485247 BCL9LQ86UU0 1499 aa8.46□□□□□ -1.05
PTPN4-210ENST00000485247 RGS20O76081 388 aa8.46□□□□□ -1.06
PTPN4-210ENST00000485247 KMT5BQ4FZB7 885 aa8.46□□□□□ -1.06
PTPN4-210ENST00000485247 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.46□□□□□ -1.06
PTPN4-210ENST00000485247 CCDC102AQ96A19 550 aa8.46□□□□□ -1.06
PTPN4-210ENST00000485247 PTCH1Q13635 1447 aa8.46□□□□□ -1.06
PTPN4-210ENST00000485247 MYO5BQ9ULV0 1848 aa8.45□□□□□ -1.06
PTPN4-210ENST00000485247 LMTK2Q8IWU2 1503 aa8.45□□□□□ -1.06
PTPN4-210ENST00000485247 ZPR1O75312 459 aa8.45□□□□□ -1.06
PTPN4-210ENST00000485247 MINK1Q8N4C8 1332 aaPredicted RBP8.45□□□□□ -1.06
PTPN4-210ENST00000485247 DDX11L8A8MPP1 907 aa8.44□□□□□ -1.06
PTPN4-210ENST00000485247 TLL1O43897 1013 aa8.44□□□□□ -1.06
PTPN4-210ENST00000485247 RDH13Q8NBN7 331 aa8.44□□□□□ -1.06
PTPN4-210ENST00000485247 MYOM3Q5VTT5 1437 aa8.44□□□□□ -1.06
PTPN4-210ENST00000485247 TRPM2O94759 1503 aa8.44□□□□□ -1.06
PTPN4-210ENST00000485247 GCC2Q8IWJ2 1684 aa8.43□□□□□ -1.06
PTPN4-210ENST00000485247 PPP1R18Q6NYC8 613 aa8.43□□□□□ -1.06
PTPN4-210ENST00000485247 ZC3H15Q8WU90 426 aaKnown RBP8.43□□□□□ -1.06
PTPN4-210ENST00000485247 SOS2Q07890 1332 aaPredicted RBP8.43□□□□□ -1.06
PTPN4-210ENST00000485247 TMEM131LA2VDJ0 1609 aa8.43□□□□□ -1.06
PTPN4-210ENST00000485247 R3HDM1Q15032 1099 aaKnown RBP8.42□□□□□ -1.06
PTPN4-210ENST00000485247 SEPT12Q8IYM1 358 aa8.42□□□□□ -1.06
PTPN4-210ENST00000485247 ORAI2Q96SN7 254 aa8.42□□□□□ -1.06
PTPN4-210ENST00000485247 C1orf167Q5SNV9 1468 aa8.42□□□□□ -1.06
PTPN4-210ENST00000485247 RALGAPBQ86X10 1494 aa8.41□□□□□ -1.06
PTPN4-210ENST00000485247 ZMYND10O75800 440 aa8.41□□□□□ -1.06
PTPN4-210ENST00000485247 BAG6P46379 1132 aa8.41□□□□□ -1.06
PTPN4-210ENST00000485247 PUS10Q3MIT2 529 aaKnown RBP8.41□□□□□ -1.06
PTPN4-210ENST00000485247 CHIC2Q9UKJ5 165 aa8.41□□□□□ -1.06
PTPN4-210ENST00000485247 UNC13BO14795 1591 aa8.4□□□□□ -1.06
PTPN4-210ENST00000485247 ABCC5O15440 1437 aa8.4□□□□□ -1.06
PTPN4-210ENST00000485247 ADGRL3Q9HAR2 1447 aa8.4□□□□□ -1.06
PTPN4-210ENST00000485247 GCGRP47871 477 aa8.4□□□□□ -1.06
PTPN4-210ENST00000485247 MDM2Q00987 491 aaPredicted RBP8.4□□□□□ -1.06
PTPN4-210ENST00000485247 BARGINQ6ZT62 677 aa8.4□□□□□ -1.06
PTPN4-210ENST00000485247 UNC5CLQ8IV45 518 aa8.4□□□□□ -1.06
PTPN4-210ENST00000485247 SULF1Q8IWU6 871 aa8.4□□□□□ -1.06
PTPN4-210ENST00000485247 GLI3P10071 1580 aa8.39□□□□□ -1.07
PTPN4-210ENST00000485247 MYOM2P54296 1465 aa8.39□□□□□ -1.07
PTPN4-210ENST00000485247 RPRD2Q5VT52 1461 aaKnown RBP8.39□□□□□ -1.07
PTPN4-210ENST00000485247 METP08581 1390 aa8.39□□□□□ -1.07
PTPN4-210ENST00000485247 BRWD3Q6RI45 1802 aa8.39□□□□□ -1.07
PTPN4-210ENST00000485247 SENP3-EIF4A1A0A087X0R7 540 aa8.39□□□□□ -1.07
PTPN4-210ENST00000485247 FUT2Q10981 343 aa8.39□□□□□ -1.07
PTPN4-210ENST00000485247 KRT27Q7Z3Y8 459 aa8.39□□□□□ -1.07
PTPN4-210ENST00000485247 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.39□□□□□ -1.07
PTPN4-210ENST00000485247 XRN1Q8IZH2 1706 aaKnown RBP8.38□□□□□ -1.07
PTPN4-210ENST00000485247 CD46P15529 392 aa8.38□□□□□ -1.07
PTPN4-210ENST00000485247 LAMC1P11047 1609 aa8.37□□□□□ -1.07
PTPN4-210ENST00000485247 COL22A1Q8NFW1 1626 aaPredicted RBP8.37□□□□□ -1.07
PTPN4-210ENST00000485247 XPCQ01831 940 aaPredicted RBP8.37□□□□□ -1.07
PTPN4-210ENST00000485247 MORN1Q5T089 497 aa8.37□□□□□ -1.07
PTPN4-210ENST00000485247 KANK4Q5T7N3 995 aaPredicted RBP8.37□□□□□ -1.07
PTPN4-210ENST00000485247 SCUBE3Q8IX30 993 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms