RNA–Protein interactions for RNA: ENST00000483495.5

CPNE1-225, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,853 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-225ENST00000483495 DDX19BQ9UMR2 479 aa16.92■□□□□ 0.3
CPNE1-225ENST00000483495 STRCQ7RTU9 1775 aa16.92■□□□□ 0.3
CPNE1-225ENST00000483495 HAP1P54257 671 aaPredicted RBP16.91■□□□□ 0.3
CPNE1-225ENST00000483495 RTF1Q92541 710 aaKnown RBP16.91■□□□□ 0.3
CPNE1-225ENST00000483495 PCDHB15Q9Y5E8 787 aa16.91■□□□□ 0.3
CPNE1-225ENST00000483495 NCAPD2Q15021 1401 aa16.91■□□□□ 0.3
CPNE1-225ENST00000483495 LTV1Q96GA3 475 aaPredicted RBP16.9■□□□□ 0.3
CPNE1-225ENST00000483495 LRRC37A3O60309 1634 aa16.9■□□□□ 0.3
CPNE1-225ENST00000483495 MSH6P52701 1360 aa16.9■□□□□ 0.3
CPNE1-225ENST00000483495 NBPF6Q5VWK0 638 aa16.89■□□□□ 0.29
CPNE1-225ENST00000483495 TMEM57Q8N5G2 664 aa16.89■□□□□ 0.29
CPNE1-225ENST00000483495 NBPF4Q96M43 638 aa16.89■□□□□ 0.29
CPNE1-225ENST00000483495 GNAT3A8MTJ3 354 aa16.88■□□□□ 0.29
CPNE1-225ENST00000483495 SKAP1Q86WV1 359 aa16.88■□□□□ 0.29
CPNE1-225ENST00000483495 MAP3K5Q99683 1374 aa16.88■□□□□ 0.29
CPNE1-225ENST00000483495 ELL2O00472 640 aaPredicted RBP16.88■□□□□ 0.29
CPNE1-225ENST00000483495 ITPRIPQ8IWB1 547 aa16.88■□□□□ 0.29
CPNE1-225ENST00000483495 NPHP3Q7Z494 1330 aa16.88■□□□□ 0.29
CPNE1-225ENST00000483495 PDE4AP27815 886 aa16.87■□□□□ 0.29
CPNE1-225ENST00000483495 BACH2Q9BYV9 841 aa16.87■□□□□ 0.29
CPNE1-225ENST00000483495 MED1Q15648 1581 aaPredicted RBP16.87■□□□□ 0.29
CPNE1-225ENST00000483495 XIRP1Q702N8 1843 aaKnown RBP16.86■□□□□ 0.29
CPNE1-225ENST00000483495 LMOD2Q6P5Q4 547 aa16.86■□□□□ 0.29
CPNE1-225ENST00000483495 USHBP1Q8N6Y0 703 aa16.86■□□□□ 0.29
CPNE1-225ENST00000483495 RWDD1Q9H446 243 aaPredicted RBP16.86■□□□□ 0.29
CPNE1-225ENST00000483495 ZBTB40Q9NUA8 1239 aa16.86■□□□□ 0.29
CPNE1-225ENST00000483495 BABAM1Q9NWV8 329 aa16.86■□□□□ 0.29
CPNE1-225ENST00000483495 ABCC4O15439 1325 aa16.86■□□□□ 0.29
CPNE1-225ENST00000483495 CAMTA1Q9Y6Y1 1673 aa16.85■□□□□ 0.29
CPNE1-225ENST00000483495 PXDNQ92626 1479 aa16.85■□□□□ 0.29
CPNE1-225ENST00000483495 API5Q9BZZ5 524 aaKnown RBP16.84■□□□□ 0.29
CPNE1-225ENST00000483495 TSPYL4Q9UJ04 414 aa16.84■□□□□ 0.29
CPNE1-225ENST00000483495 TNS3Q68CZ2 1445 aa16.84■□□□□ 0.29
CPNE1-225ENST00000483495 HDAC1Q13547 482 aaPredicted RBP16.84■□□□□ 0.29
CPNE1-225ENST00000483495 KRT24Q2M2I5 525 aa16.84■□□□□ 0.29
CPNE1-225ENST00000483495 IL17REQ8NFR9 667 aa16.84■□□□□ 0.29
CPNE1-225ENST00000483495 ANKRD24Q8TF21 1146 aa16.83■□□□□ 0.28
CPNE1-225ENST00000483495 CHMP4BQ9H444 224 aaKnown RBP16.83■□□□□ 0.28
CPNE1-225ENST00000483495 CEMIPQ8WUJ3 1361 aa16.83■□□□□ 0.28
CPNE1-225ENST00000483495 ZBTB7CA1YPR0 619 aa16.82■□□□□ 0.28
CPNE1-225ENST00000483495 LRRC59Q96AG4 307 aaKnown RBP16.82■□□□□ 0.28
CPNE1-225ENST00000483495 AXIN2Q9Y2T1 843 aa16.82■□□□□ 0.28
CPNE1-225ENST00000483495 DDX17Q92841 729 aaKnown RBP16.82■□□□□ 0.28
CPNE1-225ENST00000483495 MIS18AQ9NYP9 233 aa16.82■□□□□ 0.28
CPNE1-225ENST00000483495 SOS1Q07889 1333 aaPredicted RBP16.81■□□□□ 0.28
CPNE1-225ENST00000483495 SPATA31A3Q5VYP0 1347 aa16.81■□□□□ 0.28
CPNE1-225ENST00000483495 ZBTB7BO15156 539 aaPredicted RBP16.81■□□□□ 0.28
CPNE1-225ENST00000483495 ABCC6O95255 1503 aa16.81■□□□□ 0.28
CPNE1-225ENST00000483495 TAF7Q15545 349 aaPredicted RBP16.8■□□□□ 0.28
CPNE1-225ENST00000483495 BRINP3Q76B58 766 aa16.8■□□□□ 0.28
CPNE1-225ENST00000483495 RGPD2P0DJD1 1756 aa16.8■□□□□ 0.28
CPNE1-225ENST00000483495 LMO7Q8WWI1 1683 aa16.8■□□□□ 0.28
CPNE1-225ENST00000483495 ERBB3P21860 1342 aa16.8■□□□□ 0.28
CPNE1-225ENST00000483495 ZNF335Q9H4Z2 1342 aaPredicted RBP16.8■□□□□ 0.28
CPNE1-225ENST00000483495 AMOTQ4VCS5 1084 aa16.8■□□□□ 0.28
CPNE1-225ENST00000483495 RGS12O14924 1447 aa16.79■□□□□ 0.28
CPNE1-225ENST00000483495 PTPRCP08575 1304 aa16.79■□□□□ 0.28
CPNE1-225ENST00000483495 PLEKHO1Q53GL0 409 aaPredicted RBP16.79■□□□□ 0.28
CPNE1-225ENST00000483495 RGS3P49796 1198 aa16.78■□□□□ 0.28
CPNE1-225ENST00000483495 AKAP4Q5JQC9 854 aa16.78■□□□□ 0.28
CPNE1-225ENST00000483495 CRYBG1Q9Y4K1 1723 aa16.78■□□□□ 0.28
CPNE1-225ENST00000483495 ZC3H6P61129 1189 aaKnown RBP16.78■□□□□ 0.28
CPNE1-225ENST00000483495 FAM161AQ3B820 660 aa16.78■□□□□ 0.28
CPNE1-225ENST00000483495 INTS3Q68E01 1043 aaKnown RBP16.77■□□□□ 0.27
CPNE1-225ENST00000483495 PDZRN3Q9UPQ7 1066 aa16.77■□□□□ 0.27
CPNE1-225ENST00000483495 COL18A1P39060 1754 aa16.77■□□□□ 0.27
CPNE1-225ENST00000483495 OVOS2A0A0G2JMS6 1433 aa16.77■□□□□ 0.27
CPNE1-225ENST00000483495 CPDO75976 1380 aa16.77■□□□□ 0.27
CPNE1-225ENST00000483495 PLEKHG5O94827 1062 aa16.76■□□□□ 0.27
CPNE1-225ENST00000483495 C8orf34Q49A92 452 aa16.76■□□□□ 0.27
CPNE1-225ENST00000483495 SMC5Q8IY18 1101 aa16.76■□□□□ 0.27
CPNE1-225ENST00000483495 SLAIN2Q9P270 581 aa16.76■□□□□ 0.27
CPNE1-225ENST00000483495 PLEKHG2Q9H7P9 1386 aa16.75■□□□□ 0.27
CPNE1-225ENST00000483495 SOS2Q07890 1332 aaPredicted RBP16.75■□□□□ 0.27
CPNE1-225ENST00000483495 ZNF530Q6P9A1 599 aaPredicted RBP16.75■□□□□ 0.27
CPNE1-225ENST00000483495 SLC4A2P04920 1241 aa16.74■□□□□ 0.27
CPNE1-225ENST00000483495 RGPD5Q99666 1765 aa16.74■□□□□ 0.27
CPNE1-225ENST00000483495 MSH5O43196 834 aa16.73■□□□□ 0.27
CPNE1-225ENST00000483495 LGR6Q9HBX8 967 aa16.73■□□□□ 0.27
CPNE1-225ENST00000483495 ANP32AP39687 249 aaKnown RBP16.73■□□□□ 0.27
CPNE1-225ENST00000483495 CCDC30Q5VVM6 783 aa16.72■□□□□ 0.27
CPNE1-225ENST00000483495 CABLES1Q8TDN4 633 aa16.72■□□□□ 0.27
CPNE1-225ENST00000483495 FAM208AQ9UK61 1670 aaKnown RBP16.72■□□□□ 0.27
CPNE1-225ENST00000483495 C1orf141Q5JVX7 400 aa16.71■□□□□ 0.27
CPNE1-225ENST00000483495 ADAMTS7Q9UKP4 1686 aa16.71■□□□□ 0.27
CPNE1-225ENST00000483495 RNMTO43148 476 aaKnown RBP16.71■□□□□ 0.27
CPNE1-225ENST00000483495 HOXB7P09629 217 aa16.71■□□□□ 0.27
CPNE1-225ENST00000483495 STK31Q9BXU1 1019 aa16.71■□□□□ 0.27
CPNE1-225ENST00000483495 KDM3BQ7LBC6 1761 aa16.71■□□□□ 0.26
CPNE1-225ENST00000483495 EIF4A1P60842 406 aaKnown RBP16.69■□□□□ 0.26
CPNE1-225ENST00000483495 G2E3Q7L622 706 aa16.69■□□□□ 0.26
CPNE1-225ENST00000483495 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.69■□□□□ 0.267e-10■■□□□ 14.3
CPNE1-225ENST00000483495 TEFQ10587 303 aa16.69■□□□□ 0.26
CPNE1-225ENST00000483495 MPRIPQ6WCQ1 1025 aa16.69■□□□□ 0.26
CPNE1-225ENST00000483495 SIRT2Q8IXJ6 389 aa16.68■□□□□ 0.26
CPNE1-225ENST00000483495 RAPGEF4Q8WZA2 1011 aa16.68■□□□□ 0.26
CPNE1-225ENST00000483495 GCC1Q96CN9 775 aa16.68■□□□□ 0.26
CPNE1-225ENST00000483495 NLRP2Q9NX02 1062 aa16.68■□□□□ 0.26
CPNE1-225ENST00000483495 NUCB1Q02818 461 aa16.67■□□□□ 0.26
CPNE1-225ENST00000483495 IPO9Q96P70 1041 aaKnown RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms