RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 IFFO2Q5TF58 517 aa10.66□□□□□ -0.7
VPS50-212ENST00000476413 EHBP1Q8NDI1 1231 aa10.66□□□□□ -0.7
VPS50-212ENST00000476413 IVNS1ABPQ9Y6Y0 642 aa10.66□□□□□ -0.7
VPS50-212ENST00000476413 USP4Q13107 963 aa10.65□□□□□ -0.7
VPS50-212ENST00000476413 SWI5Q1ZZU3 235 aa10.65□□□□□ -0.7
VPS50-212ENST00000476413 CCDC102BQ68D86 513 aa10.65□□□□□ -0.7
VPS50-212ENST00000476413 MPNDQ8N594 471 aa10.65□□□□□ -0.7
VPS50-212ENST00000476413 GNEQ9Y223 722 aaKnown RBP10.65□□□□□ -0.7
VPS50-212ENST00000476413 TLL2Q9Y6L7 1015 aa10.65□□□□□ -0.7
VPS50-212ENST00000476413 CD2BP2O95400 341 aaKnown RBP10.64□□□□□ -0.71
VPS50-212ENST00000476413 TPCN2Q8NHX9 752 aa10.64□□□□□ -0.71
VPS50-212ENST00000476413 ERVK-9P63128 1117 aa10.63□□□□□ -0.71
VPS50-212ENST00000476413 TXNDC2Q86VQ3 553 aa10.63□□□□□ -0.71
VPS50-212ENST00000476413 SIRT1Q96EB6 747 aa10.63□□□□□ -0.71
VPS50-212ENST00000476413 SFI1A8K8P3 1242 aa10.62□□□□□ -0.71
VPS50-212ENST00000476413 FSHRP23945 695 aa10.62□□□□□ -0.71
VPS50-212ENST00000476413 SEC13P55735 322 aa10.62□□□□□ -0.71
VPS50-212ENST00000476413 B4GALNT3Q6L9W6 998 aa10.62□□□□□ -0.71
VPS50-212ENST00000476413 ARID5BQ14865 1188 aa10.61□□□□□ -0.71
VPS50-212ENST00000476413 TMCO4Q5TGY1 634 aa10.61□□□□□ -0.71
VPS50-212ENST00000476413 TMPRSS4Q9NRS4 437 aa10.61□□□□□ -0.71
VPS50-212ENST00000476413 WNT7AO00755 349 aa10.6□□□□□ -0.71
VPS50-212ENST00000476413 ATP2B4P23634 1241 aa10.6□□□□□ -0.71
VPS50-212ENST00000476413 OCLNQ16625 522 aa10.6□□□□□ -0.71
VPS50-212ENST00000476413 OSBPL3Q9H4L5 887 aa10.6□□□□□ -0.71
VPS50-212ENST00000476413 SLC19A1P41440 591 aa10.59□□□□□ -0.71
VPS50-212ENST00000476413 MRGPRX2Q96LB1 330 aa10.59□□□□□ -0.71
VPS50-212ENST00000476413 TMEM229AB2RXF0 380 aa10.58□□□□□ -0.72
VPS50-212ENST00000476413 LILRA1O75019 489 aa10.58□□□□□ -0.72
VPS50-212ENST00000476413 ADH1CP00326 375 aa10.58□□□□□ -0.72
VPS50-212ENST00000476413 MYCP01106 439 aaPredicted RBP10.58□□□□□ -0.72
VPS50-212ENST00000476413 SCNN1AP37088 669 aa10.58□□□□□ -0.72
VPS50-212ENST00000476413 MFAP1P55081 439 aaKnown RBP10.58□□□□□ -0.72
VPS50-212ENST00000476413 PSME1Q06323 249 aa10.58□□□□□ -0.72
VPS50-212ENST00000476413 CC2D2BQ6DHV5 1058 aa10.58□□□□□ -0.72
VPS50-212ENST00000476413 NR3C2P08235 984 aa10.57□□□□□ -0.72
VPS50-212ENST00000476413 SPRYD7Q5W111 196 aa10.57□□□□□ -0.72
VPS50-212ENST00000476413 ZNF784Q8NCA9 323 aaPredicted RBP10.57□□□□□ -0.72
VPS50-212ENST00000476413 C1orf216Q8TAB5 229 aa10.57□□□□□ -0.72
VPS50-212ENST00000476413 CYLDQ9NQC7 956 aa10.57□□□□□ -0.72
VPS50-212ENST00000476413 M0R2N6 131 aa10.56□□□□□ -0.72
VPS50-212ENST00000476413 PRMT3O60678 531 aa10.56□□□□□ -0.72
VPS50-212ENST00000476413 STAU1O95793 577 aaKnown RBP10.56□□□□□ -0.72
VPS50-212ENST00000476413 SCNN1DP51172 638 aa10.56□□□□□ -0.72
VPS50-212ENST00000476413 SND1Q7KZF4 910 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS50-212ENST00000476413 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS50-212ENST00000476413 TSEN2Q8NCE0 465 aaKnown RBP10.56□□□□□ -0.72
VPS50-212ENST00000476413 RGS22Q8NE09 1264 aa10.56□□□□□ -0.72
VPS50-212ENST00000476413 CXXC1Q9P0U4 656 aaPredicted RBP10.56□□□□□ -0.72
VPS50-212ENST00000476413 LGR5O75473 907 aa10.55□□□□□ -0.72
VPS50-212ENST00000476413 DHX9Q08211 1270 aaKnown RBP10.55□□□□□ -0.72
VPS50-212ENST00000476413 NR5A1Q13285 461 aa10.55□□□□□ -0.72
VPS50-212ENST00000476413 PPP1R26Q5T8A7 1209 aaPredicted RBP10.55□□□□□ -0.72
VPS50-212ENST00000476413 CCDC116Q8IYX3 515 aa10.55□□□□□ -0.72
VPS50-212ENST00000476413 PRIMPOLQ96LW4 560 aa10.55□□□□□ -0.72
VPS50-212ENST00000476413 ZNF358Q9NW07 568 aa10.55□□□□□ -0.72
VPS50-212ENST00000476413 TAS1R3Q7RTX0 852 aa10.54□□□□□ -0.72
VPS50-212ENST00000476413 WASLO00401 505 aaPredicted RBP10.53□□□□□ -0.72
VPS50-212ENST00000476413 ARID4AP29374 1257 aaPredicted RBP10.53□□□□□ -0.72
VPS50-212ENST00000476413 CCER1Q8TC90 406 aaPredicted RBP10.53□□□□□ -0.72
VPS50-212ENST00000476413 PKD2L1Q9P0L9 805 aa10.53□□□□□ -0.72
VPS50-212ENST00000476413 RBM19Q9Y4C8 960 aaKnown RBP10.53□□□□□ -0.72
VPS50-212ENST00000476413 WEE1P30291 646 aa10.52□□□□□ -0.73
VPS50-212ENST00000476413 ADD1P35611 737 aaKnown RBP10.52□□□□□ -0.73
VPS50-212ENST00000476413 A0A0G2JS52 829 aa10.51□□□□□ -0.73
VPS50-212ENST00000476413 SERPINB4P48594 390 aa10.51□□□□□ -0.73
VPS50-212ENST00000476413 ETNK1Q9HBU6 452 aa10.51□□□□□ -0.73
VPS50-212ENST00000476413 EPHA4P54764 986 aa10.5□□□□□ -0.73
VPS50-212ENST00000476413 GDF10P55107 478 aa10.5□□□□□ -0.73
VPS50-212ENST00000476413 MYT1Q01538 1121 aa10.5□□□□□ -0.73
VPS50-212ENST00000476413 ZNF697Q5TEC3 545 aa10.5□□□□□ -0.73
VPS50-212ENST00000476413 ZNF598Q86UK7 904 aaKnown RBP10.5□□□□□ -0.73
VPS50-212ENST00000476413 PURBQ96QR8 312 aaKnown RBP10.5□□□□□ -0.73
VPS50-212ENST00000476413 HINFPQ9BQA5 517 aa10.5□□□□□ -0.73
VPS50-212ENST00000476413 MTMR7Q9Y216 660 aa10.5□□□□□ -0.73
VPS50-212ENST00000476413 INHAP05111 366 aa10.48□□□□□ -0.73
VPS50-212ENST00000476413 KDF1Q8NAX2 398 aaPredicted RBP10.48□□□□□ -0.73
VPS50-212ENST00000476413 GAS2L2Q8NHY3 880 aa10.48□□□□□ -0.73
VPS50-212ENST00000476413 SOWAHDA6NJG2 315 aa10.47□□□□□ -0.73
VPS50-212ENST00000476413 ALDH1A1P00352 501 aa10.47□□□□□ -0.73
VPS50-212ENST00000476413 FKBP5Q13451 457 aaPredicted RBP10.47□□□□□ -0.73
VPS50-212ENST00000476413 CAPN12Q6ZSI9 719 aa10.47□□□□□ -0.73
VPS50-212ENST00000476413 CYP2U1Q7Z449 544 aa10.47□□□□□ -0.73
VPS50-212ENST00000476413 TNS4Q8IZW8 715 aa10.47□□□□□ -0.73
VPS50-212ENST00000476413 PLA2G2EQ9NZK7 142 aa10.47□□□□□ -0.73
VPS50-212ENST00000476413 EMILIN1Q9Y6C2 1016 aa10.47□□□□□ -0.73
VPS50-212ENST00000476413 C21orf2O43822 256 aa10.46□□□□□ -0.73
VPS50-212ENST00000476413 FOXC1Q12948 553 aa10.46□□□□□ -0.73
VPS50-212ENST00000476413 NNTQ13423 1086 aa10.46□□□□□ -0.73
VPS50-212ENST00000476413 CCDC27Q2M243 656 aa10.46□□□□□ -0.73
VPS50-212ENST00000476413 SLC4A9Q96Q91 983 aa10.46□□□□□ -0.73
VPS50-212ENST00000476413 KLF16Q9BXK1 252 aaPredicted RBP10.46□□□□□ -0.73
VPS50-212ENST00000476413 ESF1Q9H501 851 aaKnown RBP10.46□□□□□ -0.73
VPS50-212ENST00000476413 GNRH1P01148 92 aa10.45□□□□□ -0.74
VPS50-212ENST00000476413 PRKD2Q9BZL6 878 aa10.45□□□□□ -0.74
VPS50-212ENST00000476413 PGPEP1Q9NXJ5 209 aa10.45□□□□□ -0.74
VPS50-212ENST00000476413 V9GY48 417 aaPredicted RBP10.45□□□□□ -0.74
VPS50-212ENST00000476413 GDF9O60383 454 aa10.44□□□□□ -0.74
VPS50-212ENST00000476413 IGFBP4P22692 258 aa10.44□□□□□ -0.74
VPS50-212ENST00000476413 FOXK2Q01167 660 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms