RNA–Protein interactions for RNA: ENST00000476387.1

COL1A1-205, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 600 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-205ENST00000476387 NBPF4Q96M43 638 aa22.36■■□□□ 1.17
COL1A1-205ENST00000476387 PPP1R1BQ9UD71 204 aaPredicted RBP22.35■■□□□ 1.17
COL1A1-205ENST00000476387 ANKRD26Q9UPS8 1709 aa22.34■■□□□ 1.17
COL1A1-205ENST00000476387 HSP90AB2PQ58FF8 381 aa22.34■■□□□ 1.17
COL1A1-205ENST00000476387 PAPPAQ13219 1627 aa22.33■■□□□ 1.17
COL1A1-205ENST00000476387 RAPGEF4Q8WZA2 1011 aa22.33■■□□□ 1.17
COL1A1-205ENST00000476387 SHANK3Q9BYB0 1731 aa22.32■■□□□ 1.16
COL1A1-205ENST00000476387 PDGFDQ9GZP0 370 aaPredicted RBP22.32■■□□□ 1.16
COL1A1-205ENST00000476387 SLC27A3Q5K4L6 730 aa22.31■■□□□ 1.16
COL1A1-205ENST00000476387 USHBP1Q8N6Y0 703 aa22.3■■□□□ 1.16
COL1A1-205ENST00000476387 ZBTB7AO95365 584 aa22.29■■□□□ 1.16
COL1A1-205ENST00000476387 TATP17735 454 aaPredicted RBP22.29■■□□□ 1.16
COL1A1-205ENST00000476387 PRIM1P49642 420 aaKnown RBP22.29■■□□□ 1.16
COL1A1-205ENST00000476387 EMILIN1Q9Y6C2 1016 aa22.29■■□□□ 1.16
COL1A1-205ENST00000476387 DOT1LQ8TEK3 1739 aa22.28■■□□□ 1.16
COL1A1-205ENST00000476387 LRRC4BQ9NT99 713 aa22.28■■□□□ 1.16
COL1A1-205ENST00000476387 NSD2O96028 1365 aa22.27■■□□□ 1.16
COL1A1-205ENST00000476387 MAP2P11137 1827 aaKnown RBP22.27■■□□□ 1.16
COL1A1-205ENST00000476387 SYTL4Q96C24 671 aaPredicted RBP22.27■■□□□ 1.16
COL1A1-205ENST00000476387 MTFR1LQ9H019 292 aa22.27■■□□□ 1.16
COL1A1-205ENST00000476387 NCAPD2Q15021 1401 aa22.26■■□□□ 1.15
COL1A1-205ENST00000476387 PTGER2P43116 358 aa22.26■■□□□ 1.15
COL1A1-205ENST00000476387 PCDH11XQ9BZA7 1347 aa22.26■■□□□ 1.15
COL1A1-205ENST00000476387 PCDH11YQ9BZA8 1340 aa22.26■■□□□ 1.15
COL1A1-205ENST00000476387 WASHC2AQ641Q2 1341 aa22.25■■□□□ 1.15
COL1A1-205ENST00000476387 ZNF827Q17R98 1081 aa22.24■■□□□ 1.15
COL1A1-205ENST00000476387 AKT1S1Q96B36 256 aa22.24■■□□□ 1.15
COL1A1-205ENST00000476387 ATF5Q9Y2D1 282 aaPredicted RBP22.24■■□□□ 1.15
COL1A1-205ENST00000476387 PPM1GO15355 546 aaPredicted RBP22.23■■□□□ 1.15
COL1A1-205ENST00000476387 PANK3Q9H999 370 aa22.23■■□□□ 1.15
COL1A1-205ENST00000476387 SGIP1Q9BQI5 828 aa22.22■■□□□ 1.15
COL1A1-205ENST00000476387 KIF7Q2M1P5 1343 aa22.22■■□□□ 1.15
COL1A1-205ENST00000476387 LY75O60449 1722 aa22.22■■□□□ 1.15
COL1A1-205ENST00000476387 POLKQ9UBT6 870 aa22.21■■□□□ 1.15
COL1A1-205ENST00000476387 DCAF8L1A6NGE4 600 aa22.2■■□□□ 1.14
COL1A1-205ENST00000476387 QSER1Q2KHR3 1735 aa22.2■■□□□ 1.14
COL1A1-205ENST00000476387 PKD1L3Q7Z443 1732 aa22.19■■□□□ 1.14
COL1A1-205ENST00000476387 CYP27B1O15528 508 aa22.18■■□□□ 1.14
COL1A1-205ENST00000476387 SLC16A10Q8TF71 515 aa22.18■■□□□ 1.14
COL1A1-205ENST00000476387 CCNL1Q9UK58 526 aaPredicted RBP22.18■■□□□ 1.14
COL1A1-205ENST00000476387 EYA1Q99502 592 aa22.17■■□□□ 1.14
COL1A1-205ENST00000476387 HMGB2P26583 209 aaKnown RBP22.16■■□□□ 1.14
COL1A1-205ENST00000476387 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.16■■□□□ 1.14
COL1A1-205ENST00000476387 TFCP2L1Q9NZI6 479 aa22.16■■□□□ 1.14
COL1A1-205ENST00000476387 SPG7Q9UQ90 795 aa22.16■■□□□ 1.14
COL1A1-205ENST00000476387 PNPLA7Q6ZV29 1317 aa22.15■■□□□ 1.14
COL1A1-205ENST00000476387 KCNQ4P56696 695 aa22.15■■□□□ 1.14
COL1A1-205ENST00000476387 KNSTRNQ9Y448 316 aa22.15■■□□□ 1.14
COL1A1-205ENST00000476387 PLEKHG2Q9H7P9 1386 aa22.14■■□□□ 1.14
COL1A1-205ENST00000476387 TNNT2P45379 298 aaPredicted RBP22.14■■□□□ 1.13
COL1A1-205ENST00000476387 NKX1-1Q15270 411 aaPredicted RBP22.14■■□□□ 1.13
COL1A1-205ENST00000476387 ARXQ96QS3 562 aa22.14■■□□□ 1.13
COL1A1-205ENST00000476387 FHDC1Q9C0D6 1143 aaPredicted RBP22.14■■□□□ 1.13
COL1A1-205ENST00000476387 SYT17Q9BSW7 474 aa22.13■■□□□ 1.13
COL1A1-205ENST00000476387 MAP3K5Q99683 1374 aa22.12■■□□□ 1.13
COL1A1-205ENST00000476387 EIF4A2Q14240 407 aaKnown RBP22.12■■□□□ 1.13
COL1A1-205ENST00000476387 TUBGCP6Q96RT7 1819 aa22.12■■□□□ 1.13
COL1A1-205ENST00000476387 MPRIPQ6WCQ1 1025 aa22.11■■□□□ 1.13
COL1A1-205ENST00000476387 SMARCC1Q92922 1105 aaPredicted RBP22.11■■□□□ 1.13
COL1A1-205ENST00000476387 TOGARAM1Q9Y4F4 1720 aa22.11■■□□□ 1.13
COL1A1-205ENST00000476387 PALLDQ8WX93 1383 aa22.11■■□□□ 1.13
COL1A1-205ENST00000476387 COL24A1Q17RW2 1714 aa22.1■■□□□ 1.13
COL1A1-205ENST00000476387 ITGB4P16144 1822 aa22.09■■□□□ 1.13
COL1A1-205ENST00000476387 YY1P25490 414 aa22.09■■□□□ 1.13
COL1A1-205ENST00000476387 MORC1Q86VD1 984 aa22.09■■□□□ 1.13
COL1A1-205ENST00000476387 IGSF1Q8N6C5 1336 aa22.08■■□□□ 1.13
COL1A1-205ENST00000476387 POLD1P28340 1107 aa22.08■■□□□ 1.13
COL1A1-205ENST00000476387 IFNL2Q8IZJ0 200 aa22.07■■□□□ 1.12
COL1A1-205ENST00000476387 PIGBQ92521 554 aa22.07■■□□□ 1.12
COL1A1-205ENST00000476387 C5P01031 1676 aa22.07■■□□□ 1.12
COL1A1-205ENST00000476387 PHKG2P15735 406 aa22.06■■□□□ 1.12
COL1A1-205ENST00000476387 COL23A1Q86Y22 540 aaPredicted RBP22.04■■□□□ 1.12
COL1A1-205ENST00000476387 FLAD1Q8NFF5 587 aa22.04■■□□□ 1.12
COL1A1-205ENST00000476387 TAF1LQ8IZX4 1826 aa22.03■■□□□ 1.12
COL1A1-205ENST00000476387 AMER1Q5JTC6 1135 aaPredicted RBP22.03■■□□□ 1.12
COL1A1-205ENST00000476387 TMOD3Q9NYL9 352 aa22.03■■□□□ 1.12
COL1A1-205ENST00000476387 MSH5O43196 834 aa22.02■■□□□ 1.12
COL1A1-205ENST00000476387 LOC102724428A0A0B4J2F2 783 aa22■■□□□ 1.11
COL1A1-205ENST00000476387 SIK1P57059 783 aa22■■□□□ 1.11
COL1A1-205ENST00000476387 C4BP0C0L5 1744 aa22■■□□□ 1.11
COL1A1-205ENST00000476387 HSP90AB1P08238 724 aaKnown RBP21.99■■□□□ 1.11
COL1A1-205ENST00000476387 AMOTQ4VCS5 1084 aa21.99■■□□□ 1.11
COL1A1-205ENST00000476387 PLEKHO1Q53GL0 409 aaPredicted RBP21.99■■□□□ 1.11
COL1A1-205ENST00000476387 AK7Q96M32 723 aa21.99■■□□□ 1.11
COL1A1-205ENST00000476387 UTRNP46939 3433 aa21.98■■□□□ 1.11
COL1A1-205ENST00000476387 PER1O15534 1290 aaPredicted RBP21.98■■□□□ 1.11
COL1A1-205ENST00000476387 ASAP1Q9ULH1 1129 aa21.98■■□□□ 1.11
COL1A1-205ENST00000476387 ERVV-2B6SEH9 535 aa21.97■■□□□ 1.11
COL1A1-205ENST00000476387 CC2D1BQ5T0F9 858 aaKnown RBP21.97■■□□□ 1.11
COL1A1-205ENST00000476387 DCAF5Q96JK2 942 aa21.97■■□□□ 1.11
COL1A1-205ENST00000476387 NPC1L1Q9UHC9 1359 aa21.96■■□□□ 1.11
COL1A1-205ENST00000476387 IL13P35225 146 aa21.95■■□□□ 1.1
COL1A1-205ENST00000476387 ZNF530Q6P9A1 599 aaPredicted RBP21.95■■□□□ 1.1
COL1A1-205ENST00000476387 KLHL34Q8N239 644 aa21.95■■□□□ 1.1
COL1A1-205ENST00000476387 ATG3Q9NT62 314 aa21.95■■□□□ 1.1
COL1A1-205ENST00000476387 KDRP35968 1356 aa21.95■■□□□ 1.1
COL1A1-205ENST00000476387 AEBP1Q8IUX7 1158 aa21.94■■□□□ 1.1
COL1A1-205ENST00000476387 UBR3Q6ZT12 1888 aa21.94■■□□□ 1.1
COL1A1-205ENST00000476387 SSFA2P28290 1259 aa21.93■■□□□ 1.1
COL1A1-205ENST00000476387 MSL1Q68DK7 614 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms