RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 FAM184AQ8NB25 1140 aa7.48□□□□□ -1.21
HERC4-209ENST00000473533 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.48□□□□□ -1.21
HERC4-209ENST00000473533 SIRT1Q96EB6 747 aa7.48□□□□□ -1.21
HERC4-209ENST00000473533 LETM1O95202 739 aaPredicted RBP7.48□□□□□ -1.21
HERC4-209ENST00000473533 IL13P35225 146 aa7.48□□□□□ -1.21
HERC4-209ENST00000473533 ZSCAN23Q3MJ62 389 aa7.48□□□□□ -1.21
HERC4-209ENST00000473533 KIAA1211Q6ZU35 1233 aa7.48□□□□□ -1.21
HERC4-209ENST00000473533 GAS2L3Q86XJ1 694 aa7.48□□□□□ -1.21
HERC4-209ENST00000473533 SOS1Q07889 1333 aaPredicted RBP7.47□□□□□ -1.21
HERC4-209ENST00000473533 CCT4P50991 539 aaKnown RBP7.47□□□□□ -1.21
HERC4-209ENST00000473533 INTS4Q96HW7 963 aaKnown RBP7.47□□□□□ -1.21
HERC4-209ENST00000473533 CHMP4AQ9BY43 222 aa7.47□□□□□ -1.21
HERC4-209ENST00000473533 SRCIN1Q9C0H9 1055 aa7.47□□□□□ -1.21
HERC4-209ENST00000473533 OSBPL3Q9H4L5 887 aa7.47□□□□□ -1.21
HERC4-209ENST00000473533 CAVIN1Q6NZI2 390 aaKnown RBP7.47□□□□□ -1.21
HERC4-209ENST00000473533 LRSAM1Q6UWE0 723 aa7.47□□□□□ -1.21
HERC4-209ENST00000473533 PDLIM2Q96JY6 352 aa7.47□□□□□ -1.21
HERC4-209ENST00000473533 LMBRD1Q9NUN5 540 aa7.47□□□□□ -1.21
HERC4-209ENST00000473533 ARHGEF10O15013 1369 aa7.46□□□□□ -1.21
HERC4-209ENST00000473533 MAP2P11137 1827 aaKnown RBP7.46□□□□□ -1.21
HERC4-209ENST00000473533 PDIA4P13667 645 aaKnown RBP7.46□□□□□ -1.22
HERC4-209ENST00000473533 UVSSAQ2YD98 709 aa7.46□□□□□ -1.22
HERC4-209ENST00000473533 GSPT1P15170 499 aaKnown RBP7.46□□□□□ -1.22
HERC4-209ENST00000473533 SIRT2Q8IXJ6 389 aa7.46□□□□□ -1.22
HERC4-209ENST00000473533 C1orf115Q9H7X2 142 aa7.46□□□□□ -1.22
HERC4-209ENST00000473533 FOXD4L1Q9NU39 408 aa7.46□□□□□ -1.22
HERC4-209ENST00000473533 NRKQ7Z2Y5 1582 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 AOX1Q06278 1338 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 ZKSCAN5Q9Y2L8 839 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 RICTORQ6R327 1708 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 ERBB4Q15303 1308 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 DYNC1I1O14576 645 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 CEP85Q6P2H3 762 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.45□□□□□ -1.223e-6■■■□□ 17.4
HERC4-209ENST00000473533 TTC21BQ7Z4L5 1316 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 TPM3P06753 285 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 GNAI3P08754 354 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 HMOX1P09601 288 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 NUTM2DQ5VT03 806 aaPredicted RBP7.45□□□□□ -1.22
HERC4-209ENST00000473533 ATP6V1DQ9Y5K8 247 aa7.45□□□□□ -1.22
HERC4-209ENST00000473533 MYO5BQ9ULV0 1848 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 SDSP20132 328 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 TSPY26PQ9H489 355 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 ITSN1Q15811 1721 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 MON2Q7Z3U7 1717 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 ATP10DQ9P241 1426 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 WASLO00401 505 aaPredicted RBP7.44□□□□□ -1.22
HERC4-209ENST00000473533 CD2BP2O95400 341 aaKnown RBP7.44□□□□□ -1.22
HERC4-209ENST00000473533 PTMAP06454 111 aaKnown RBP7.44□□□□□ -1.22
HERC4-209ENST00000473533 HMGN5P82970 282 aaKnown RBP7.44□□□□□ -1.22
HERC4-209ENST00000473533 TSPYL6Q8N831 410 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 KNDC1Q76NI1 1749 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 RTL1A6NKG5 1358 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 WDR33Q9C0J8 1336 aaKnown RBP7.44□□□□□ -1.22
HERC4-209ENST00000473533 PRPF40AO75400 957 aaKnown RBP7.44□□□□□ -1.22
HERC4-209ENST00000473533 TRHP20396 242 aaPredicted RBP7.44□□□□□ -1.22
HERC4-209ENST00000473533 KIAA2012Q0VF49 1180 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 SASS6Q6UVJ0 657 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 VSIG10Q8N0Z9 540 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 PHACTR3Q96KR7 559 aa7.44□□□□□ -1.22
HERC4-209ENST00000473533 CHL1O00533 1208 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 C8orf58Q8NAV2 365 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 IL17RAQ96F46 866 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 RBM42Q9BTD8 480 aaKnown RBP7.43□□□□□ -1.22
HERC4-209ENST00000473533 STK31Q9BXU1 1019 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 CCDC61Q9Y6R9 512 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 DLG5Q8TDM6 1919 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 AGLP35573 1532 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 GNAI2P04899 355 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 PKNOX2Q96KN3 472 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 CUL4AQ13619 759 aa7.43□□□□□ -1.22
HERC4-209ENST00000473533 RTF1Q92541 710 aaKnown RBP7.43□□□□□ -1.22
HERC4-209ENST00000473533 ELL2O00472 640 aaPredicted RBP7.42□□□□□ -1.22
HERC4-209ENST00000473533 HTATSF1O43719 755 aaKnown RBP7.42□□□□□ -1.22
HERC4-209ENST00000473533 AKAP12Q02952 1782 aa7.42□□□□□ -1.22
HERC4-209ENST00000473533 BRD1O95696 1058 aa7.42□□□□□ -1.22
HERC4-209ENST00000473533 PRIMPOLQ96LW4 560 aa7.42□□□□□ -1.22
HERC4-209ENST00000473533 LRRCC1Q9C099 1032 aa7.42□□□□□ -1.22
HERC4-209ENST00000473533 EMILIN1Q9Y6C2 1016 aa7.42□□□□□ -1.22
HERC4-209ENST00000473533 MSH6P52701 1360 aa7.42□□□□□ -1.22
HERC4-209ENST00000473533 TECPR2O15040 1411 aa7.42□□□□□ -1.22
HERC4-209ENST00000473533 NEK4P51957 841 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 PDE1AP54750 535 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 RBSNQ9H1K0 784 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 BABAM1Q9NWV8 329 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 SPATA31D1Q6ZQQ2 1576 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 RGS12O14924 1447 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 PRIM1P49642 420 aaKnown RBP7.41□□□□□ -1.22
HERC4-209ENST00000473533 C3P01024 1663 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 PXDNLA1KZ92 1463 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 TMX3Q96JJ7 454 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 ESYT1Q9BSJ8 1104 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 THUMPD2Q9BTF0 503 aaKnown RBP7.41□□□□□ -1.22
HERC4-209ENST00000473533 HDAC5Q9UQL6 1122 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 R3HCC1Q9Y3T6 440 aaKnown RBP7.41□□□□□ -1.22
HERC4-209ENST00000473533 A2ML1A8K2U0 1454 aa7.41□□□□□ -1.22
HERC4-209ENST00000473533 RAB11FIP3O75154 756 aa7.4□□□□□ -1.22
HERC4-209ENST00000473533 PLPPR3Q6T4P5 718 aa7.4□□□□□ -1.22
HERC4-209ENST00000473533 NUDT16Q96DE0 195 aaKnown RBP7.4□□□□□ -1.22
HERC4-209ENST00000473533 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms