RNA–Protein interactions for RNA: ENST00000471744.1

SNX13-205, Transcript of sorting nexin 13, humanhuman

TSL 4

Gene SNX13, Length 454 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-205ENST00000471744 BCL9O00512 1426 aa20.32■□□□□ 0.84
SNX13-205ENST00000471744 PKD1L3Q7Z443 1732 aa20.31■□□□□ 0.84
SNX13-205ENST00000471744 ZCRB1Q8TBF4 217 aaKnown RBP20.31■□□□□ 0.84
SNX13-205ENST00000471744 UPF1Q92900 1129 aaKnown RBP eCLIP20.31■□□□□ 0.84
SNX13-205ENST00000471744 NUDCQ9Y266 331 aa20.3■□□□□ 0.84
SNX13-205ENST00000471744 SHANK3Q9BYB0 1731 aa20.3■□□□□ 0.84
SNX13-205ENST00000471744 SBF2Q86WG5 1849 aa20.3■□□□□ 0.84
SNX13-205ENST00000471744 MYBBP1AQ9BQG0 1328 aaKnown RBP20.29■□□□□ 0.84
SNX13-205ENST00000471744 MARCH10Q8NA82 808 aaPredicted RBP20.29■□□□□ 0.84
SNX13-205ENST00000471744 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.29■□□□□ 0.84
SNX13-205ENST00000471744 KDRP35968 1356 aa20.29■□□□□ 0.84
SNX13-205ENST00000471744 FAM182BQ5T319 152 aa20.28■□□□□ 0.84
SNX13-205ENST00000471744 PRKRIP1Q9H875 184 aaPredicted RBP20.28■□□□□ 0.84
SNX13-205ENST00000471744 PCDH11XQ9BZA7 1347 aa20.27■□□□□ 0.84
SNX13-205ENST00000471744 PCDH11YQ9BZA8 1340 aa20.27■□□□□ 0.84
SNX13-205ENST00000471744 SF3B2Q13435 895 aaKnown RBP20.27■□□□□ 0.84
SNX13-205ENST00000471744 SULT6B1Q6IMI4 303 aa20.27■□□□□ 0.84
SNX13-205ENST00000471744 SPG7Q9UQ90 795 aa20.27■□□□□ 0.84
SNX13-205ENST00000471744 DDX54Q8TDD1 881 aaKnown RBP20.25■□□□□ 0.83
SNX13-205ENST00000471744 U2SURPO15042 1029 aaKnown RBP20.24■□□□□ 0.83
SNX13-205ENST00000471744 AMOTQ4VCS5 1084 aa20.24■□□□□ 0.83
SNX13-205ENST00000471744 PLEKHO1Q53GL0 409 aaPredicted RBP20.23■□□□□ 0.83
SNX13-205ENST00000471744 AEBP1Q8IUX7 1158 aa20.23■□□□□ 0.83
SNX13-205ENST00000471744 TNS1Q9HBL0 1735 aaKnown RBP20.23■□□□□ 0.83
SNX13-205ENST00000471744 EP400Q96L91 3159 aa20.22■□□□□ 0.83
SNX13-205ENST00000471744 ANP32CO43423 234 aa20.21■□□□□ 0.83
SNX13-205ENST00000471744 TRIM37O94972 964 aa20.21■□□□□ 0.83
SNX13-205ENST00000471744 NHSQ6T4R5 1651 aa20.21■□□□□ 0.83
SNX13-205ENST00000471744 HMOX1P09601 288 aa20.2■□□□□ 0.82
SNX13-205ENST00000471744 BAG6P46379 1132 aa20.19■□□□□ 0.82
SNX13-205ENST00000471744 IFNL2Q8IZJ0 200 aa20.19■□□□□ 0.82
SNX13-205ENST00000471744 BCL11BQ9C0K0 894 aaPredicted RBP20.19■□□□□ 0.82
SNX13-205ENST00000471744 CYP27B1O15528 508 aa20.18■□□□□ 0.82
SNX13-205ENST00000471744 U2AF1L5P0DN76 240 aaPredicted RBP20.18■□□□□ 0.82
SNX13-205ENST00000471744 U2AF1Q01081 240 aaKnown RBP eCLIP20.18■□□□□ 0.82
SNX13-205ENST00000471744 DOT1LQ8TEK3 1739 aa20.18■□□□□ 0.82
SNX13-205ENST00000471744 FCHSD2O94868 740 aa20.17■□□□□ 0.82
SNX13-205ENST00000471744 HSP90AB1P08238 724 aaKnown RBP20.17■□□□□ 0.82
SNX13-205ENST00000471744 NKX1-1Q15270 411 aaPredicted RBP20.17■□□□□ 0.82
SNX13-205ENST00000471744 PHKG2P15735 406 aa20.16■□□□□ 0.82
SNX13-205ENST00000471744 ZNF530Q6P9A1 599 aaPredicted RBP20.16■□□□□ 0.82
SNX13-205ENST00000471744 RGPD3A6NKT7 1758 aaPredicted RBP20.16■□□□□ 0.82
SNX13-205ENST00000471744 RGPD4Q7Z3J3 1758 aa20.16■□□□□ 0.82
SNX13-205ENST00000471744 C1orf141Q5JVX7 400 aa20.15■□□□□ 0.82
SNX13-205ENST00000471744 PNNQ9H307 717 aaKnown RBP20.15■□□□□ 0.82
SNX13-205ENST00000471744 APBA3O96018 575 aa20.14■□□□□ 0.81
SNX13-205ENST00000471744 ACSBG1Q96GR2 724 aa20.14■□□□□ 0.81
SNX13-205ENST00000471744 RSPH6AQ9H0K4 717 aa20.14■□□□□ 0.81
SNX13-205ENST00000471744 BTAF1O14981 1849 aa20.13■□□□□ 0.81
SNX13-205ENST00000471744 ITGB4P16144 1822 aa20.13■□□□□ 0.81
SNX13-205ENST00000471744 NEFMP07197 916 aa20.12■□□□□ 0.81
SNX13-205ENST00000471744 PRKAR2BP31323 418 aa20.12■□□□□ 0.81
SNX13-205ENST00000471744 GAS2L2Q8NHY3 880 aa20.12■□□□□ 0.81
SNX13-205ENST00000471744 TOGARAM1Q9Y4F4 1720 aa20.11■□□□□ 0.81
SNX13-205ENST00000471744 PLSCR1O15162 318 aa20.11■□□□□ 0.81
SNX13-205ENST00000471744 KCNQ2O43526 872 aa20.11■□□□□ 0.81
SNX13-205ENST00000471744 AKAP4Q5JQC9 854 aa20.11■□□□□ 0.81
SNX13-205ENST00000471744 DCAF5Q96JK2 942 aa20.11■□□□□ 0.81
SNX13-205ENST00000471744 VIRMAQ69YN4 1812 aaKnown RBP20.11■□□□□ 0.81
SNX13-205ENST00000471744 PRIM1P49642 420 aaKnown RBP20.1■□□□□ 0.81
SNX13-205ENST00000471744 WDR43Q15061 677 aaKnown RBP eCLIP20.1■□□□□ 0.81
SNX13-205ENST00000471744 DEFB132Q7Z7B7 95 aa20.1■□□□□ 0.81
SNX13-205ENST00000471744 SYTL4Q96C24 671 aaPredicted RBP20.1■□□□□ 0.81
SNX13-205ENST00000471744 SCN11AQ9UI33 1791 aa20.1■□□□□ 0.81
SNX13-205ENST00000471744 MTHFSDQ2M296 383 aaKnown RBP20.09■□□□□ 0.81
SNX13-205ENST00000471744 EN1Q05925 392 aaPredicted RBP20.08■□□□□ 0.81
SNX13-205ENST00000471744 ERVV-2B6SEH9 535 aa20.07■□□□□ 0.8
SNX13-205ENST00000471744 PTF1AQ7RTS3 328 aa20.07■□□□□ 0.8
SNX13-205ENST00000471744 CAMKK2Q96RR4 588 aa20.07■□□□□ 0.8
SNX13-205ENST00000471744 RREB1Q92766 1687 aa20.06■□□□□ 0.8
SNX13-205ENST00000471744 KDM6AO15550 1401 aaPredicted RBP20.05■□□□□ 0.8
SNX13-205ENST00000471744 TMOD3Q9NYL9 352 aa20.05■□□□□ 0.8
SNX13-205ENST00000471744 MAP3K5Q99683 1374 aa20.05■□□□□ 0.8
SNX13-205ENST00000471744 MAPK8IP3Q9UPT6 1336 aa20.04■□□□□ 0.8
SNX13-205ENST00000471744 ADAMTS7Q9UKP4 1686 aa20.04■□□□□ 0.8
SNX13-205ENST00000471744 GNAT3A8MTJ3 354 aa20.04■□□□□ 0.8
SNX13-205ENST00000471744 MPRIPQ6WCQ1 1025 aa20.04■□□□□ 0.8
SNX13-205ENST00000471744 PHACTR3Q96KR7 559 aa20.04■□□□□ 0.8
SNX13-205ENST00000471744 EZH2Q15910 746 aaKnown RBP20.03■□□□□ 0.8
SNX13-205ENST00000471744 PLEKHF1Q96S99 279 aa20.03■□□□□ 0.8
SNX13-205ENST00000471744 LY75O60449 1722 aa20.02■□□□□ 0.8
SNX13-205ENST00000471744 HMGB2P26583 209 aaKnown RBP20.02■□□□□ 0.8
SNX13-205ENST00000471744 CABP4P57796 275 aa20.02■□□□□ 0.8
SNX13-205ENST00000471744 SMARCC1Q92922 1105 aaPredicted RBP20.02■□□□□ 0.8
SNX13-205ENST00000471744 DLG5Q8TDM6 1919 aa20.02■□□□□ 0.79
SNX13-205ENST00000471744 RNMTO43148 476 aaKnown RBP20.01■□□□□ 0.79
SNX13-205ENST00000471744 PIGBQ92521 554 aa20.01■□□□□ 0.79
SNX13-205ENST00000471744 MRS2Q9HD23 443 aa20.01■□□□□ 0.79
SNX13-205ENST00000471744 NUP188Q5SRE5 1749 aa20.01■□□□□ 0.79
SNX13-205ENST00000471744 MRC1P22897 1456 aa20■□□□□ 0.79
SNX13-205ENST00000471744 HTATSF1O43719 755 aaKnown RBP20■□□□□ 0.79
SNX13-205ENST00000471744 TXNRD1Q16881 649 aa19.99■□□□□ 0.79
SNX13-205ENST00000471744 SLC27A3Q5K4L6 730 aa19.99■□□□□ 0.79
SNX13-205ENST00000471744 RTF1Q92541 710 aaKnown RBP19.99■□□□□ 0.79
SNX13-205ENST00000471744 ADAMTS8Q9UP79 889 aa19.99■□□□□ 0.79
SNX13-205ENST00000471744 NFE2L2Q16236 605 aa19.98■□□□□ 0.79
SNX13-205ENST00000471744 RUNDC1Q96C34 613 aa19.98■□□□□ 0.79
SNX13-205ENST00000471744 SLC52A2Q9HAB3 445 aa19.98■□□□□ 0.79
SNX13-205ENST00000471744 PALLDQ8WX93 1383 aa19.97■□□□□ 0.79
SNX13-205ENST00000471744 LGR6Q9HBX8 967 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms