RNA–Protein interactions for RNA: ENST00000470083.5

LSM2-209, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM2, Length 641 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-209ENST00000470083 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.3■□□□□ 0.36
LSM2-209ENST00000470083 LY75O60449 1722 aa17.29■□□□□ 0.36
LSM2-209ENST00000470083 NME9Q86XW9 330 aa17.28■□□□□ 0.36
LSM2-209ENST00000470083 FLAD1Q8NFF5 587 aa17.28■□□□□ 0.36
LSM2-209ENST00000470083 USP47Q96K76 1375 aa17.28■□□□□ 0.36
LSM2-209ENST00000470083 IGSF1Q8N6C5 1336 aa17.27■□□□□ 0.36
LSM2-209ENST00000470083 USP54Q70EL1 1684 aa17.26■□□□□ 0.35
LSM2-209ENST00000470083 TOMM70O94826 608 aa17.26■□□□□ 0.35
LSM2-209ENST00000470083 HMGB2P26583 209 aaKnown RBP17.26■□□□□ 0.35
LSM2-209ENST00000470083 SBNO2Q9Y2G9 1366 aa17.26■□□□□ 0.35
LSM2-209ENST00000470083 IP6K1Q92551 441 aa17.25■□□□□ 0.35
LSM2-209ENST00000470083 COL13A1Q5TAT6 717 aaPredicted RBP17.24■□□□□ 0.35
LSM2-209ENST00000470083 ZCRB1Q8TBF4 217 aaKnown RBP17.24■□□□□ 0.35
LSM2-209ENST00000470083 DOT1LQ8TEK3 1739 aa17.24■□□□□ 0.35
LSM2-209ENST00000470083 WWC3Q9ULE0 1092 aa17.23■□□□□ 0.35
LSM2-209ENST00000470083 LTN1O94822 1766 aa17.23■□□□□ 0.35
LSM2-209ENST00000470083 MON2Q7Z3U7 1717 aa17.22■□□□□ 0.35
LSM2-209ENST00000470083 LTV1Q96GA3 475 aaPredicted RBP17.22■□□□□ 0.35
LSM2-209ENST00000470083 CD163L1Q9NR16 1453 aa17.21■□□□□ 0.35
LSM2-209ENST00000470083 CICQ96RK0 1608 aaPredicted RBP17.21■□□□□ 0.35
LSM2-209ENST00000470083 CAPN15O75808 1086 aa17.2■□□□□ 0.34
LSM2-209ENST00000470083 JMYQ8N9B5 988 aa17.2■□□□□ 0.34
LSM2-209ENST00000470083 PCNTO95613 3336 aa17.2■□□□□ 0.34
LSM2-209ENST00000470083 MEGF6O75095 1541 aa17.2■□□□□ 0.34
LSM2-209ENST00000470083 KLRG1Q96E93 195 aa17.19■□□□□ 0.34
LSM2-209ENST00000470083 EDC4Q6P2E9 1401 aaKnown RBP17.19■□□□□ 0.34
LSM2-209ENST00000470083 FAM208AQ9UK61 1670 aaKnown RBP17.19■□□□□ 0.34
LSM2-209ENST00000470083 PALLDQ8WX93 1383 aa17.18■□□□□ 0.34
LSM2-209ENST00000470083 PRELPP51888 382 aa17.18■□□□□ 0.34
LSM2-209ENST00000470083 HDGFL2Q7Z4V5 671 aaPredicted RBP17.17■□□□□ 0.34
LSM2-209ENST00000470083 AMIGO3Q86WK7 504 aa17.17■□□□□ 0.34
LSM2-209ENST00000470083 TNS4Q8IZW8 715 aa17.17■□□□□ 0.34
LSM2-209ENST00000470083 RBM46Q8TBY0 533 aaKnown RBP17.17■□□□□ 0.34
LSM2-209ENST00000470083 AK7Q96M32 723 aa17.17■□□□□ 0.34
LSM2-209ENST00000470083 CGNL1Q0VF96 1302 aa17.17■□□□□ 0.34
LSM2-209ENST00000470083 C5P01031 1676 aa17.16■□□□□ 0.34
LSM2-209ENST00000470083 ROCK2O75116 1388 aaKnown RBP17.16■□□□□ 0.34
LSM2-209ENST00000470083 NSD3Q9BZ95 1437 aa17.16■□□□□ 0.34
LSM2-209ENST00000470083 NMRK2Q9NPI5 230 aa17.16■□□□□ 0.34
LSM2-209ENST00000470083 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.15■□□□□ 0.34
LSM2-209ENST00000470083 HOXC9P31274 260 aa17.15■□□□□ 0.34
LSM2-209ENST00000470083 PHF14O94880 888 aa17.14■□□□□ 0.33
LSM2-209ENST00000470083 ADRA2BP18089 450 aa17.14■□□□□ 0.33
LSM2-209ENST00000470083 TMC1Q8TDI8 760 aa17.14■□□□□ 0.33
LSM2-209ENST00000470083 MAP3K19Q56UN5 1328 aa17.14■□□□□ 0.33
LSM2-209ENST00000470083 SSFA2P28290 1259 aa17.13■□□□□ 0.33
LSM2-209ENST00000470083 HTRA3P83110 453 aa17.13■□□□□ 0.33
LSM2-209ENST00000470083 L3MBTL2Q969R5 705 aa17.13■□□□□ 0.33
LSM2-209ENST00000470083 SLC12A5Q9H2X9 1139 aa17.13■□□□□ 0.33
LSM2-209ENST00000470083 AMPHP49418 695 aa17.12■□□□□ 0.33
LSM2-209ENST00000470083 FSTL1Q12841 308 aa17.12■□□□□ 0.33
LSM2-209ENST00000470083 SMARCC1Q92922 1105 aaPredicted RBP17.12■□□□□ 0.33
LSM2-209ENST00000470083 TERF2IPQ9NYB0 399 aa17.12■□□□□ 0.33
LSM2-209ENST00000470083 C4BP0C0L5 1744 aa17.12■□□□□ 0.33
LSM2-209ENST00000470083 WDR90Q96KV7 1748 aa17.12■□□□□ 0.33
LSM2-209ENST00000470083 A0A1W2PP64 1363 aa17.12■□□□□ 0.33
LSM2-209ENST00000470083 PXDNLA1KZ92 1463 aa17.12■□□□□ 0.33
LSM2-209ENST00000470083 SMIM5Q71RC9 77 aa17.11■□□□□ 0.33
LSM2-209ENST00000470083 RAPGEF4Q8WZA2 1011 aa17.11■□□□□ 0.33
LSM2-209ENST00000470083 TOGARAM1Q9Y4F4 1720 aa17.1■□□□□ 0.33
LSM2-209ENST00000470083 NBPF6Q5VWK0 638 aa17.1■□□□□ 0.33
LSM2-209ENST00000470083 MPRIPQ6WCQ1 1025 aa17.1■□□□□ 0.33
LSM2-209ENST00000470083 C16orf71Q8IYS4 520 aaPredicted RBP17.1■□□□□ 0.33
LSM2-209ENST00000470083 NBPF4Q96M43 638 aa17.1■□□□□ 0.33
LSM2-209ENST00000470083 BCS1LQ9Y276 419 aa17.1■□□□□ 0.33
LSM2-209ENST00000470083 PCDH11XQ9BZA7 1347 aa17.1■□□□□ 0.33
LSM2-209ENST00000470083 PCDH11YQ9BZA8 1340 aa17.1■□□□□ 0.33
LSM2-209ENST00000470083 TGFB2P61812 414 aa17.09■□□□□ 0.33
LSM2-209ENST00000470083 RTL1A6NKG5 1358 aa17.09■□□□□ 0.33
LSM2-209ENST00000470083 TAF1LQ8IZX4 1826 aa17.08■□□□□ 0.33
LSM2-209ENST00000470083 MMP10P09238 476 aa17.08■□□□□ 0.32
LSM2-209ENST00000470083 ARHGAP27Q6ZUM4 889 aa17.08■□□□□ 0.32
LSM2-209ENST00000470083 COG3Q96JB2 828 aa17.08■□□□□ 0.32
LSM2-209ENST00000470083 PLEKHG2Q9H7P9 1386 aa17.07■□□□□ 0.32
LSM2-209ENST00000470083 TATP17735 454 aaPredicted RBP17.07■□□□□ 0.32
LSM2-209ENST00000470083 USHBP1Q8N6Y0 703 aa17.07■□□□□ 0.32
LSM2-209ENST00000470083 FBLN1P23142 703 aa17.06■□□□□ 0.32
LSM2-209ENST00000470083 LINC00116Q8NCU8 138 aa17.06■□□□□ 0.32
LSM2-209ENST00000470083 UBR3Q6ZT12 1888 aa17.05■□□□□ 0.32
LSM2-209ENST00000470083 LOC102724428A0A0B4J2F2 783 aa17.05■□□□□ 0.32
LSM2-209ENST00000470083 A0A0G2JLW4 131 aa17.05■□□□□ 0.32
LSM2-209ENST00000470083 CYP27B1O15528 508 aa17.05■□□□□ 0.32
LSM2-209ENST00000470083 SIK1P57059 783 aa17.05■□□□□ 0.32
LSM2-209ENST00000470083 C9orf131Q5VYM1 1079 aa17.05■□□□□ 0.32
LSM2-209ENST00000470083 C10orf71Q711Q0 1435 aa17.04■□□□□ 0.32
LSM2-209ENST00000470083 SMG6Q86US8 1419 aaKnown RBP17.04■□□□□ 0.32
LSM2-209ENST00000470083 GNPATO15228 680 aa17.04■□□□□ 0.32
LSM2-209ENST00000470083 PIGBQ92521 554 aa17.04■□□□□ 0.32
LSM2-209ENST00000470083 KDM2BQ8NHM5 1336 aa17.03■□□□□ 0.32
LSM2-209ENST00000470083 FCHSD2O94868 740 aa17.03■□□□□ 0.32
LSM2-209ENST00000470083 PUS7Q96PZ0 661 aaKnown RBP17.03■□□□□ 0.32
LSM2-209ENST00000470083 RGPD2P0DJD1 1756 aa17.02■□□□□ 0.31
LSM2-209ENST00000470083 KIAA1551Q9HCM1 1747 aa17.01■□□□□ 0.31
LSM2-209ENST00000470083 DPEP1P16444 411 aa17.01■□□□□ 0.31
LSM2-209ENST00000470083 RRS1Q15050 365 aaKnown RBP17.01■□□□□ 0.31
LSM2-209ENST00000470083 PIAS4Q8N2W9 510 aaPredicted RBP17.01■□□□□ 0.31
LSM2-209ENST00000470083 SMC1BQ8NDV3 1235 aa17.01■□□□□ 0.31
LSM2-209ENST00000470083 KCPQ6ZWJ8 1503 aa17.01■□□□□ 0.31
LSM2-209ENST00000470083 KIF13BQ9NQT8 1826 aa17■□□□□ 0.31
LSM2-209ENST00000470083 HSPA1AP0DMV8 641 aaKnown RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms