RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 ACSBG1Q96GR2 724 aa14.01□□□□□ -0.17
SF3A3-204ENST00000462258 NBPF4Q96M43 638 aa14.01□□□□□ -0.17
SF3A3-204ENST00000462258 PANK3Q9H999 370 aa14.01□□□□□ -0.17
SF3A3-204ENST00000462258 KIF7Q2M1P5 1343 aa14□□□□□ -0.17
SF3A3-204ENST00000462258 TOGARAM1Q9Y4F4 1720 aa14□□□□□ -0.17
SF3A3-204ENST00000462258 LY75O60449 1722 aa13.99□□□□□ -0.17
SF3A3-204ENST00000462258 PPM1GO15355 546 aaPredicted RBP13.99□□□□□ -0.17
SF3A3-204ENST00000462258 KCNQ2O43526 872 aa13.99□□□□□ -0.17
SF3A3-204ENST00000462258 NBPF14Q5TI25 921 aa13.99□□□□□ -0.17
SF3A3-204ENST00000462258 DDX54Q8TDD1 881 aaKnown RBP13.99□□□□□ -0.17
SF3A3-204ENST00000462258 RAPGEF4Q8WZA2 1011 aa13.98□□□□□ -0.17
SF3A3-204ENST00000462258 WASHC2AQ641Q2 1341 aa13.97□□□□□ -0.17
SF3A3-204ENST00000462258 TNNT2P45379 298 aaPredicted RBP13.97□□□□□ -0.17
SF3A3-204ENST00000462258 ZCRB1Q8TBF4 217 aaKnown RBP13.97□□□□□ -0.17
SF3A3-204ENST00000462258 ANO8Q9HCE9 1232 aaPredicted RBP13.97□□□□□ -0.17
SF3A3-204ENST00000462258 TATP17735 454 aaPredicted RBP13.96□□□□□ -0.17
SF3A3-204ENST00000462258 TXNRD1Q16881 649 aa13.96□□□□□ -0.17
SF3A3-204ENST00000462258 POLKQ9UBT6 870 aa13.96□□□□□ -0.17
SF3A3-204ENST00000462258 PCDH11XQ9BZA7 1347 aa13.95□□□□□ -0.18
SF3A3-204ENST00000462258 PCDH11YQ9BZA8 1340 aa13.95□□□□□ -0.18
SF3A3-204ENST00000462258 ITGB4P16144 1822 aa13.95□□□□□ -0.18
SF3A3-204ENST00000462258 QSER1Q2KHR3 1735 aa13.95□□□□□ -0.18
SF3A3-204ENST00000462258 TUBGCP6Q96RT7 1819 aa13.94□□□□□ -0.18
SF3A3-204ENST00000462258 PROM2Q8N271 834 aa13.94□□□□□ -0.18
SF3A3-204ENST00000462258 KNSTRNQ9Y448 316 aa13.94□□□□□ -0.18
SF3A3-204ENST00000462258 SYTL4Q96C24 671 aaPredicted RBP13.93□□□□□ -0.18
SF3A3-204ENST00000462258 C5P01031 1676 aa13.92□□□□□ -0.18
SF3A3-204ENST00000462258 EIF4A2Q14240 407 aaKnown RBP13.92□□□□□ -0.18
SF3A3-204ENST00000462258 MORC1Q86VD1 984 aa13.92□□□□□ -0.18
SF3A3-204ENST00000462258 EYA1Q99502 592 aa13.91□□□□□ -0.18
SF3A3-204ENST00000462258 STK32BQ9NY57 414 aa13.91□□□□□ -0.18
SF3A3-204ENST00000462258 PLEKHG2Q9H7P9 1386 aa13.91□□□□□ -0.18
SF3A3-204ENST00000462258 IGSF1Q8N6C5 1336 aa13.9□□□□□ -0.18
SF3A3-204ENST00000462258 PRIM1P49642 420 aaKnown RBP13.9□□□□□ -0.18
SF3A3-204ENST00000462258 AMER1Q5JTC6 1135 aaPredicted RBP13.9□□□□□ -0.18
SF3A3-204ENST00000462258 CYP27B1O15528 508 aa13.89□□□□□ -0.19
SF3A3-204ENST00000462258 TAF1LQ8IZX4 1826 aa13.89□□□□□ -0.19
SF3A3-204ENST00000462258 SLC15A2Q16348 729 aa13.88□□□□□ -0.19
SF3A3-204ENST00000462258 SLC27A3Q5K4L6 730 aa13.87□□□□□ -0.19
SF3A3-204ENST00000462258 LRRC4BQ9NT99 713 aa13.87□□□□□ -0.19
SF3A3-204ENST00000462258 SPG7Q9UQ90 795 aa13.87□□□□□ -0.19
SF3A3-204ENST00000462258 ZNF827Q17R98 1081 aa13.86□□□□□ -0.19
SF3A3-204ENST00000462258 PDGFDQ9GZP0 370 aaPredicted RBP13.86□□□□□ -0.19
SF3A3-204ENST00000462258 SPON1Q9HCB6 807 aa13.86□□□□□ -0.19
SF3A3-204ENST00000462258 PER1O15534 1290 aaPredicted RBP13.85□□□□□ -0.19
SF3A3-204ENST00000462258 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.85□□□□□ -0.194e-7■■■■□ 22
SF3A3-204ENST00000462258 PALLDQ8WX93 1383 aa13.84□□□□□ -0.19
SF3A3-204ENST00000462258 NPC1L1Q9UHC9 1359 aa13.84□□□□□ -0.19
SF3A3-204ENST00000462258 COL24A1Q17RW2 1714 aa13.84□□□□□ -0.19
SF3A3-204ENST00000462258 ZBTB7AO95365 584 aa13.84□□□□□ -0.19
SF3A3-204ENST00000462258 CC2D1BQ5T0F9 858 aaKnown RBP13.84□□□□□ -0.19
SF3A3-204ENST00000462258 CCNL1Q9UK58 526 aaPredicted RBP13.84□□□□□ -0.19
SF3A3-204ENST00000462258 VIRMAQ69YN4 1812 aaKnown RBP13.84□□□□□ -0.19
SF3A3-204ENST00000462258 C4BP0C0L5 1744 aa13.84□□□□□ -0.19
SF3A3-204ENST00000462258 KDRP35968 1356 aa13.83□□□□□ -0.19
SF3A3-204ENST00000462258 COL3A1P02461 1466 aaPredicted RBP13.83□□□□□ -0.2
SF3A3-204ENST00000462258 PHKG2P15735 406 aa13.83□□□□□ -0.2
SF3A3-204ENST00000462258 NKX1-1Q15270 411 aaPredicted RBP13.83□□□□□ -0.2
SF3A3-204ENST00000462258 MPRIPQ6WCQ1 1025 aa13.83□□□□□ -0.2
SF3A3-204ENST00000462258 IFNL2Q8IZJ0 200 aa13.83□□□□□ -0.2
SF3A3-204ENST00000462258 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
SF3A3-204ENST00000462258 PPP1R1BQ9UD71 204 aaPredicted RBP13.83□□□□□ -0.2
SF3A3-204ENST00000462258 SCN11AQ9UI33 1791 aa13.82□□□□□ -0.2
SF3A3-204ENST00000462258 KCNQ4P56696 695 aa13.82□□□□□ -0.2
SF3A3-204ENST00000462258 AEBP1Q8IUX7 1158 aa13.82□□□□□ -0.2
SF3A3-204ENST00000462258 IL13P35225 146 aa13.81□□□□□ -0.2
SF3A3-204ENST00000462258 MTFR1LQ9H019 292 aa13.81□□□□□ -0.2
SF3A3-204ENST00000462258 KDM6AO15550 1401 aaPredicted RBP13.81□□□□□ -0.2
SF3A3-204ENST00000462258 UBR3Q6ZT12 1888 aa13.8□□□□□ -0.2
SF3A3-204ENST00000462258 MTHFSP49914 203 aa13.8□□□□□ -0.2
SF3A3-204ENST00000462258 TMOD3Q9NYL9 352 aa13.8□□□□□ -0.2
SF3A3-204ENST00000462258 PNPLA7Q6ZV29 1317 aa13.8□□□□□ -0.2
SF3A3-204ENST00000462258 ZNF831Q5JPB2 1677 aa13.79□□□□□ -0.2
SF3A3-204ENST00000462258 COL5A3P25940 1745 aaPredicted RBP13.79□□□□□ -0.2
SF3A3-204ENST00000462258 PTGER2P43116 358 aa13.79□□□□□ -0.2
SF3A3-204ENST00000462258 CNGB1Q14028 1251 aaPredicted RBP13.79□□□□□ -0.2
SF3A3-204ENST00000462258 PLEKHO1Q53GL0 409 aaPredicted RBP13.79□□□□□ -0.2
SF3A3-204ENST00000462258 SULT6B1Q6IMI4 303 aa13.79□□□□□ -0.2
SF3A3-204ENST00000462258 ZNF530Q6P9A1 599 aaPredicted RBP13.79□□□□□ -0.2
SF3A3-204ENST00000462258 SMARCC1Q92922 1105 aaPredicted RBP13.79□□□□□ -0.2
SF3A3-204ENST00000462258 ATF5Q9Y2D1 282 aaPredicted RBP13.79□□□□□ -0.2
SF3A3-204ENST00000462258 HSP90AB1P08238 724 aaKnown RBP13.78□□□□□ -0.2
SF3A3-204ENST00000462258 AMOTQ4VCS5 1084 aa13.78□□□□□ -0.2
SF3A3-204ENST00000462258 PIGBQ92521 554 aa13.78□□□□□ -0.2
SF3A3-204ENST00000462258 TFCP2L1Q9NZI6 479 aa13.78□□□□□ -0.2
SF3A3-204ENST00000462258 ADAMTS7Q9UKP4 1686 aa13.77□□□□□ -0.21
SF3A3-204ENST00000462258 CICQ96RK0 1608 aaPredicted RBP13.76□□□□□ -0.21
SF3A3-204ENST00000462258 MRC1P22897 1456 aa13.76□□□□□ -0.21
SF3A3-204ENST00000462258 DIAPH1O60610 1272 aaKnown RBP13.76□□□□□ -0.21
SF3A3-204ENST00000462258 C1orf141Q5JVX7 400 aa13.76□□□□□ -0.21
SF3A3-204ENST00000462258 DCAF5Q96JK2 942 aa13.76□□□□□ -0.21
SF3A3-204ENST00000462258 SGIP1Q9BQI5 828 aa13.76□□□□□ -0.21
SF3A3-204ENST00000462258 TJP1Q07157 1748 aa13.75□□□□□ -0.21
SF3A3-204ENST00000462258 LOC102724428A0A0B4J2F2 783 aa13.74□□□□□ -0.21
SF3A3-204ENST00000462258 HMOX1P09601 288 aa13.74□□□□□ -0.21
SF3A3-204ENST00000462258 HMGB2P26583 209 aaKnown RBP13.74□□□□□ -0.21
SF3A3-204ENST00000462258 SIK1P57059 783 aa13.74□□□□□ -0.21
SF3A3-204ENST00000462258 SLC16A10Q8TF71 515 aa13.74□□□□□ -0.21
SF3A3-204ENST00000462258 ASAP1Q9ULH1 1129 aa13.74□□□□□ -0.21
SF3A3-204ENST00000462258 ERVV-2B6SEH9 535 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms